RNA–Protein interactions for RNA: ENST00000533408.1

PTP4A2-215, Transcript of protein tyrosine phosphatase type IVA, member 2, human

TSL 3

Gene PTP4A2, Length 376 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTP4A2-215	ENST00000533408	ARHGAP5	Q13017	1502 aa		32.41	■■■□□ 2.78
PTP4A2-215	ENST00000533408	FANCA	O15360	1455 aa		32.39	■■■□□ 2.78
PTP4A2-215	ENST00000533408	NEO1	Q92859	1461 aa		32.39	■■■□□ 2.78
PTP4A2-215	ENST00000533408	PREX2	Q70Z35	1606 aa		32.38	■■■□□ 2.77
PTP4A2-215	ENST00000533408	CFAP74	Q9C0B2	1584 aa		32.38	■■■□□ 2.77
PTP4A2-215	ENST00000533408	CDC42BPA	Q5VT25	1732 aa		32.35	■■■□□ 2.77
PTP4A2-215	ENST00000533408	ZNF777	Q9ULD5	760 aa	Predicted RBP	32.35	■■■□□ 2.77
PTP4A2-215	ENST00000533408	PLEKHH2	Q8IVE3	1493 aa		32.33	■■■□□ 2.77
PTP4A2-215	ENST00000533408	TSPOAP1	O95153	1857 aa		32.3	■■■□□ 2.76
PTP4A2-215	ENST00000533408	AKNA	Q7Z591	1439 aa		32.3	■■■□□ 2.76
PTP4A2-215	ENST00000533408	CDC42BPB	Q9Y5S2	1711 aa		32.29	■■■□□ 2.76
PTP4A2-215	ENST00000533408	FGD6	Q6ZV73	1430 aa		32.29	■■■□□ 2.76
PTP4A2-215	ENST00000533408	RSPH4A	Q5TD94	716 aa		32.28	■■■□□ 2.76
PTP4A2-215	ENST00000533408	KIAA1107	Q9UPP5	1409 aa		32.26	■■■□□ 2.75
PTP4A2-215	ENST00000533408	PPRC1	Q5VV67	1664 aa	Known RBP	32.24	■■■□□ 2.75
PTP4A2-215	ENST00000533408	ADGRL1	O94910	1474 aa		32.23	■■■□□ 2.75
PTP4A2-215	ENST00000533408	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	32.19	■■■□□ 2.74	1e-9	■■□□□ 12.2
PTP4A2-215	ENST00000533408	SCAPER	Q9BY12	1400 aa		32.19	■■■□□ 2.74
PTP4A2-215	ENST00000533408	FAM50A	Q14320	339 aa	Known RBP	32.18	■■■□□ 2.74
PTP4A2-215	ENST00000533408	CAMSAP2	Q08AD1	1489 aa		32.17	■■■□□ 2.74
PTP4A2-215	ENST00000533408	ZNF644	Q9H582	1327 aa	Predicted RBP	32.17	■■■□□ 2.74
PTP4A2-215	ENST00000533408	DENND4B	O75064	1496 aa	Predicted RBP	32.16	■■■□□ 2.74
PTP4A2-215	ENST00000533408	TCOF1	Q13428	1488 aa	Known RBP	32.16	■■■□□ 2.74
PTP4A2-215	ENST00000533408	PTPN23	Q9H3S7	1636 aa		32.16	■■■□□ 2.74
PTP4A2-215	ENST00000533408	RRBP1	Q9P2E9	1410 aa	Known RBP	32.16	■■■□□ 2.74
PTP4A2-215	ENST00000533408	SAMD9L	Q8IVG5	1584 aa		32.15	■■■□□ 2.74
PTP4A2-215	ENST00000533408	ABCC1	P33527	1531 aa		32.13	■■■□□ 2.73
PTP4A2-215	ENST00000533408	HNRNPM	P52272	730 aa	Known RBP eCLIP	32.13	■■■□□ 2.73
PTP4A2-215	ENST00000533408	TSPY4	P0CV99	314 aa		32.1	■■■□□ 2.73
PTP4A2-215	ENST00000533408	TSPY10	P0CW01	314 aa		32.1	■■■□□ 2.73
PTP4A2-215	ENST00000533408	ZNF518A	Q6AHZ1	1483 aa		32.09	■■■□□ 2.73
PTP4A2-215	ENST00000533408	SYCP2	Q9BX26	1530 aa		32.06	■■■□□ 2.72
PTP4A2-215	ENST00000533408	POGZ	Q7Z3K3	1410 aa		32.06	■■■□□ 2.72
PTP4A2-215	ENST00000533408	MBD5	Q9P267	1494 aa		32.05	■■■□□ 2.72
PTP4A2-215	ENST00000533408	ARHGEF5	Q12774	1597 aa		32.04	■■■□□ 2.72
PTP4A2-215	ENST00000533408	RAPGEF3	O95398	923 aa		32.04	■■■□□ 2.72
PTP4A2-215	ENST00000533408	KDM6B	O15054	1643 aa		32.04	■■■□□ 2.72
PTP4A2-215	ENST00000533408	CCDC141	Q6ZP82	1450 aa		32.03	■■■□□ 2.72
PTP4A2-215	ENST00000533408	ARHGEF12	Q9NZN5	1544 aa		32.02	■■■□□ 2.72
PTP4A2-215	ENST00000533408	AFAP1	Q8N556	730 aa		32.02	■■■□□ 2.72
PTP4A2-215	ENST00000533408	TRAPPC8	Q9Y2L5	1435 aa		32	■■■□□ 2.71
PTP4A2-215	ENST00000533408	SPAG9	O60271	1321 aa	Known RBP	32	■■■□□ 2.71
PTP4A2-215	ENST00000533408	MYT1L	Q9UL68	1186 aa		31.99	■■■□□ 2.71
PTP4A2-215	ENST00000533408	MAGI2	Q86UL8	1455 aa		31.97	■■■□□ 2.71
PTP4A2-215	ENST00000533408	COL17A1	Q9UMD9	1497 aa	Predicted RBP	31.97	■■■□□ 2.71
PTP4A2-215	ENST00000533408	DAPK1	P53355	1430 aa		31.96	■■■□□ 2.71
PTP4A2-215	ENST00000533408	RTEL1-TNFRSF6B	F6WH68	1400 aa		31.94	■■■□□ 2.7
PTP4A2-215	ENST00000533408	DNMT1	P26358	1616 aa	Known RBP	31.93	■■■□□ 2.7
PTP4A2-215	ENST00000533408	ABCC5	O15440	1437 aa		31.93	■■■□□ 2.7
PTP4A2-215	ENST00000533408	MLH3	Q9UHC1	1453 aa		31.92	■■■□□ 2.7
PTP4A2-215	ENST00000533408	KDM5C	P41229	1560 aa		31.92	■■■□□ 2.7
PTP4A2-215	ENST00000533408	RICTOR	Q6R327	1708 aa		31.92	■■■□□ 2.7
PTP4A2-215	ENST00000533408	SHANK2	Q9UPX8	1470 aa		31.91	■■■□□ 2.7
PTP4A2-215	ENST00000533408	TRIM26	Q12899	539 aa	Predicted RBP	31.91	■■■□□ 2.7
PTP4A2-215	ENST00000533408	ZMYM4	Q5VZL5	1548 aa		31.9	■■■□□ 2.7
PTP4A2-215	ENST00000533408	ITGAE	P38570	1179 aa		31.89	■■■□□ 2.7
PTP4A2-215	ENST00000533408	C9orf84	Q5VXU9	1444 aa		31.87	■■■□□ 2.69
PTP4A2-215	ENST00000533408	ANKRD30A	Q9BXX3	1397 aa		31.85	■■■□□ 2.69
PTP4A2-215	ENST00000533408	FRMPD1	Q5SYB0	1578 aa		31.85	■■■□□ 2.69
PTP4A2-215	ENST00000533408	HECW2	Q9P2P5	1572 aa		31.84	■■■□□ 2.69
PTP4A2-215	ENST00000533408	MAST1	Q9Y2H9	1570 aa		31.84	■■■□□ 2.69
PTP4A2-215	ENST00000533408	ROCK1	Q13464	1354 aa		31.81	■■■□□ 2.68
PTP4A2-215	ENST00000533408	ATP7A	Q04656	1500 aa		31.81	■■■□□ 2.68
PTP4A2-215	ENST00000533408	CHIC2	Q9UKJ5	165 aa		31.81	■■■□□ 2.68
PTP4A2-215	ENST00000533408	ZFYVE16	Q7Z3T8	1539 aa		31.8	■■■□□ 2.68
PTP4A2-215	ENST00000533408	CROCC2	H7BZ55	1655 aa		31.79	■■■□□ 2.68
PTP4A2-215	ENST00000533408	INO80	Q9ULG1	1556 aa	Predicted RBP	31.77	■■■□□ 2.68
PTP4A2-215	ENST00000533408	ADGRL2	O95490	1459 aa		31.76	■■■□□ 2.67
PTP4A2-215	ENST00000533408	NCOA1	Q15788	1441 aa		31.75	■■■□□ 2.67
PTP4A2-215	ENST00000533408	ATP10A	O60312	1499 aa		31.74	■■■□□ 2.67
PTP4A2-215	ENST00000533408	PTPRK	Q15262	1439 aa		31.73	■■■□□ 2.67
PTP4A2-215	ENST00000533408	RRP7BP	Q9NSQ0	103 aa		31.72	■■■□□ 2.67
PTP4A2-215	ENST00000533408	KIDINS220	Q9ULH0	1771 aa		31.71	■■■□□ 2.67
PTP4A2-215	ENST00000533408	PLXNC1	O60486	1568 aa		31.7	■■■□□ 2.67
PTP4A2-215	ENST00000533408	KIF15	Q9NS87	1388 aa		31.69	■■■□□ 2.66
PTP4A2-215	ENST00000533408	YEATS2	Q9ULM3	1422 aa		31.69	■■■□□ 2.66
PTP4A2-215	ENST00000533408	ARHGEF40	Q8TER5	1519 aa		31.69	■■■□□ 2.66
PTP4A2-215	ENST00000533408	ADGB	Q8N7X0	1667 aa		31.68	■■■□□ 2.66
PTP4A2-215	ENST00000533408	DHX29	Q7Z478	1369 aa	Known RBP	31.68	■■■□□ 2.66
PTP4A2-215	ENST00000533408	ACIN1	Q9UKV3	1341 aa	Known RBP	31.66	■■■□□ 2.66
PTP4A2-215	ENST00000533408	A2M	P01023	1474 aa		31.65	■■■□□ 2.66
PTP4A2-215	ENST00000533408	DUOX2	Q9NRD8	1548 aa		31.65	■■■□□ 2.66
PTP4A2-215	ENST00000533408	DIP2C	Q9Y2E4	1556 aa		31.64	■■■□□ 2.65
PTP4A2-215	ENST00000533408	RERE	Q9P2R6	1566 aa		31.62	■■■□□ 2.65
PTP4A2-215	ENST00000533408	ABCA6	Q8N139	1617 aa		31.61	■■■□□ 2.65
PTP4A2-215	ENST00000533408	HFM1	A2PYH4	1435 aa		31.59	■■■□□ 2.65
PTP4A2-215	ENST00000533408	ERBIN	Q96RT1	1412 aa		31.59	■■■□□ 2.65
PTP4A2-215	ENST00000533408	ANKRD50	Q9ULJ7	1429 aa		31.58	■■■□□ 2.65
PTP4A2-215	ENST00000533408	ARID4B	Q4LE39	1312 aa	Predicted RBP	31.57	■■■□□ 2.64
PTP4A2-215	ENST00000533408	AGL	P35573	1532 aa		31.54	■■■□□ 2.64
PTP4A2-215	ENST00000533408	NAIP	Q13075	1403 aa		31.53	■■■□□ 2.64
PTP4A2-215	ENST00000533408	KIF3B	O15066	747 aa		31.52	■■■□□ 2.64
PTP4A2-215	ENST00000533408	PPP6R1	Q9UPN7	881 aa		31.51	■■■□□ 2.63
PTP4A2-215	ENST00000533408	SETD5	Q9C0A6	1442 aa		31.5	■■■□□ 2.63
PTP4A2-215	ENST00000533408	HRC	P23327	699 aa		31.48	■■■□□ 2.63
PTP4A2-215	ENST00000533408	EIF2AK4	Q9P2K8	1649 aa	Known RBP	31.48	■■■□□ 2.63
PTP4A2-215	ENST00000533408	PCGF6	Q9BYE7	350 aa		31.46	■■■□□ 2.63
PTP4A2-215	ENST00000533408	GCC2	Q8IWJ2	1684 aa		31.44	■■■□□ 2.62
PTP4A2-215	ENST00000533408	KANK1	Q14678	1352 aa		31.42	■■■□□ 2.62
PTP4A2-215	ENST00000533408	GGT6	Q6P531	493 aa		31.41	■■■□□ 2.62

Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms