RNA–Protein interactions for RNA: ENST00000531558.1

PICALM-215, Transcript of phosphatidylinositol binding clathrin assembly protein, human

TSL 5

Gene PICALM, Length 565 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PICALM-215	ENST00000531558	FRMPD1	Q5SYB0	1578 aa		40.8	■■■■■ 4.12
PICALM-215	ENST00000531558	MAP3K1	Q13233	1512 aa		40.79	■■■■■ 4.12
PICALM-215	ENST00000531558	CDC42BPB	Q9Y5S2	1711 aa		40.78	■■■■■ 4.12
PICALM-215	ENST00000531558	CDC42BPA	Q5VT25	1732 aa		40.76	■■■■■ 4.12
PICALM-215	ENST00000531558	GPATCH8	Q9UKJ3	1502 aa	Known RBP	40.74	■■■■■ 4.11
PICALM-215	ENST00000531558	SCAPER	Q9BY12	1400 aa		40.74	■■■■■ 4.11
PICALM-215	ENST00000531558	RICTOR	Q6R327	1708 aa		40.72	■■■■■ 4.11
PICALM-215	ENST00000531558	LRRC9	Q6ZRR7	1453 aa		40.71	■■■■■ 4.11
PICALM-215	ENST00000531558	CCNB3	Q8WWL7	1395 aa		40.71	■■■■■ 4.11
PICALM-215	ENST00000531558	POGZ	Q7Z3K3	1410 aa		40.69	■■■■■ 4.1
PICALM-215	ENST00000531558	SUPT6H	Q7KZ85	1726 aa	Known RBP	40.65	■■■■■ 4.1
PICALM-215	ENST00000531558	NCOA2	Q15596	1464 aa		40.64	■■■■■ 4.1
PICALM-215	ENST00000531558	ZMYM4	Q5VZL5	1548 aa		40.62	■■■■■ 4.09
PICALM-215	ENST00000531558	ABCC1	P33527	1531 aa		40.62	■■■■■ 4.09
PICALM-215	ENST00000531558	KANK4	Q5T7N3	995 aa	Predicted RBP	40.61	■■■■■ 4.09
PICALM-215	ENST00000531558	APLP2	Q06481	763 aa		40.6	■■■■■ 4.09
PICALM-215	ENST00000531558	CFDP1	Q9UEE9	299 aa	Predicted RBP	40.59	■■■■■ 4.09
PICALM-215	ENST00000531558	ZNF518A	Q6AHZ1	1483 aa		40.56	■■■■■ 4.08
PICALM-215	ENST00000531558	SAMD9L	Q8IVG5	1584 aa		40.56	■■■■■ 4.08
PICALM-215	ENST00000531558	ITSN2	Q9NZM3	1697 aa		40.56	■■■■■ 4.08
PICALM-215	ENST00000531558	ARHGEF12	Q9NZN5	1544 aa		40.55	■■■■■ 4.08
PICALM-215	ENST00000531558	ARHGEF40	Q8TER5	1519 aa		40.54	■■■■■ 4.08
PICALM-215	ENST00000531558	ZNF777	Q9ULD5	760 aa	Predicted RBP	40.54	■■■■■ 4.08
PICALM-215	ENST00000531558	MAGI2	Q86UL8	1455 aa		40.52	■■■■■ 4.08
PICALM-215	ENST00000531558	KDM5C	P41229	1560 aa		40.49	■■■■■ 4.07
PICALM-215	ENST00000531558	ZFYVE16	Q7Z3T8	1539 aa		40.48	■■■■■ 4.07
PICALM-215	ENST00000531558	PLEKHH2	Q8IVE3	1493 aa		40.47	■■■■■ 4.07
PICALM-215	ENST00000531558	AFAP1	Q8N556	730 aa		40.47	■■■■■ 4.07
PICALM-215	ENST00000531558	TRAPPC8	Q9Y2L5	1435 aa		40.47	■■■■■ 4.07
PICALM-215	ENST00000531558	SYCP2	Q9BX26	1530 aa		40.46	■■■■■ 4.07
PICALM-215	ENST00000531558	YEATS2	Q9ULM3	1422 aa		40.45	■■■■■ 4.07
PICALM-215	ENST00000531558	KIAA1107	Q9UPP5	1409 aa		40.45	■■■■■ 4.07
PICALM-215	ENST00000531558	KDM4F	A0A1W2PPD8	638 aa		40.4	■■■■■ 4.06
PICALM-215	ENST00000531558	ZNF644	Q9H582	1327 aa	Predicted RBP	40.38	■■■■■ 4.05
PICALM-215	ENST00000531558	HECW2	Q9P2P5	1572 aa		40.37	■■■■■ 4.05
PICALM-215	ENST00000531558	HNRNPM	P52272	730 aa	Known RBP eCLIP	40.37	■■■■■ 4.05	2e-6	■■■■■ 27.7
PICALM-215	ENST00000531558	MLH3	Q9UHC1	1453 aa		40.35	■■■■■ 4.05
PICALM-215	ENST00000531558	MYOM3	Q5VTT5	1437 aa		40.32	■■■■■ 4.04
PICALM-215	ENST00000531558	CAMSAP2	Q08AD1	1489 aa		40.31	■■■■■ 4.04
PICALM-215	ENST00000531558	ATP10A	O60312	1499 aa		40.28	■■■■■ 4.04
PICALM-215	ENST00000531558	MBD5	Q9P267	1494 aa		40.28	■■■■■ 4.04
PICALM-215	ENST00000531558	AEBP2	Q6ZN18	517 aa	Predicted RBP	40.27	■■■■■ 4.04
PICALM-215	ENST00000531558	MYT1L	Q9UL68	1186 aa		40.27	■■■■■ 4.04
PICALM-215	ENST00000531558	MIA2	Q96PC5	1412 aa		40.25	■■■■■ 4.03
PICALM-215	ENST00000531558	C9orf84	Q5VXU9	1444 aa		40.25	■■■■■ 4.03
PICALM-215	ENST00000531558	DIP2C	Q9Y2E4	1556 aa		40.24	■■■■■ 4.03
PICALM-215	ENST00000531558	ARID4B	Q4LE39	1312 aa	Predicted RBP	40.23	■■■■■ 4.03
PICALM-215	ENST00000531558	SPAG9	O60271	1321 aa	Known RBP	40.22	■■■■■ 4.03
PICALM-215	ENST00000531558	ABCA6	Q8N139	1617 aa		40.22	■■■■■ 4.03
PICALM-215	ENST00000531558	KIDINS220	Q9ULH0	1771 aa		40.21	■■■■■ 4.03
PICALM-215	ENST00000531558	SIGLEC1	Q9BZZ2	1709 aa		40.19	■■■■■ 4.02
PICALM-215	ENST00000531558	INO80	Q9ULG1	1556 aa	Predicted RBP	40.17	■■■■■ 4.02
PICALM-215	ENST00000531558	CCDC141	Q6ZP82	1450 aa		40.16	■■■■■ 4.02
PICALM-215	ENST00000531558	ATP7A	Q04656	1500 aa		40.16	■■■■■ 4.02
PICALM-215	ENST00000531558	BCORL1	Q5H9F3	1711 aa		40.15	■■■■■ 4.02
PICALM-215	ENST00000531558	RERE	Q9P2R6	1566 aa		40.14	■■■■■ 4.02
PICALM-215	ENST00000531558	ARHGEF5	Q12774	1597 aa		40.13	■■■■■ 4.01
PICALM-215	ENST00000531558	RSPH4A	Q5TD94	716 aa		40.11	■■■■■ 4.01
PICALM-215	ENST00000531558	ADAMTSL3	P82987	1691 aa		40.11	■■■■■ 4.01
PICALM-215	ENST00000531558	FGD6	Q6ZV73	1430 aa		40.09	■■■■■ 4.01
PICALM-215	ENST00000531558	RTEL1-TNFRSF6B	F6WH68	1400 aa		40.06	■■■■■ 4
PICALM-215	ENST00000531558	PTPN23	Q9H3S7	1636 aa		40.05	■■■■■ 4
PICALM-215	ENST00000531558	AGL	P35573	1532 aa		40.01	■■■■■ 4
PICALM-215	ENST00000531558	TCOF1	Q13428	1488 aa	Known RBP	40	■■■■□ 3.99
PICALM-215	ENST00000531558	MADD	Q8WXG6	1647 aa		40	■■■■□ 3.99
PICALM-215	ENST00000531558	MLEC	Q14165	292 aa		39.97	■■■■□ 3.99
PICALM-215	ENST00000531558	A2M	P01023	1474 aa		39.95	■■■■□ 3.99
PICALM-215	ENST00000531558	TSPY4	P0CV99	314 aa		39.95	■■■■□ 3.99
PICALM-215	ENST00000531558	TSPY10	P0CW01	314 aa		39.95	■■■■□ 3.99
PICALM-215	ENST00000531558	PLXNC1	O60486	1568 aa		39.94	■■■■□ 3.98
PICALM-215	ENST00000531558	MAST1	Q9Y2H9	1570 aa		39.92	■■■■□ 3.98
PICALM-215	ENST00000531558	ADGB	Q8N7X0	1667 aa		39.92	■■■■□ 3.98
PICALM-215	ENST00000531558	PPARGC1B	Q86YN6	1023 aa	Known RBP	39.91	■■■■□ 3.98
PICALM-215	ENST00000531558	PTPRM	P28827	1452 aa		39.9	■■■■□ 3.98
PICALM-215	ENST00000531558	ABCC5	O15440	1437 aa		39.86	■■■■□ 3.97
PICALM-215	ENST00000531558	RIMS1	Q86UR5	1692 aa	Known RBP	39.86	■■■■□ 3.97
PICALM-215	ENST00000531558	SHANK2	Q9UPX8	1470 aa		39.84	■■■■□ 3.97
PICALM-215	ENST00000531558	FER1L4	A9Z1Z3	1794 aa		39.84	■■■■□ 3.97
PICALM-215	ENST00000531558	DNMT1	P26358	1616 aa	Known RBP	39.83	■■■■□ 3.97
PICALM-215	ENST00000531558	DAPK1	P53355	1430 aa		39.82	■■■■□ 3.97
PICALM-215	ENST00000531558	DHX29	Q7Z478	1369 aa	Known RBP	39.82	■■■■□ 3.96
PICALM-215	ENST00000531558	CROCC2	H7BZ55	1655 aa		39.81	■■■■□ 3.96
PICALM-215	ENST00000531558	FAM50A	Q14320	339 aa	Known RBP	39.77	■■■■□ 3.96
PICALM-215	ENST00000531558	ESF1	Q9H501	851 aa	Known RBP	39.65	■■■■□ 3.94
PICALM-215	ENST00000531558	CNTLN	Q9NXG0	1405 aa		39.65	■■■■□ 3.94
PICALM-215	ENST00000531558	KIF15	Q9NS87	1388 aa		39.63	■■■■□ 3.93
PICALM-215	ENST00000531558	GGT6	Q6P531	493 aa		39.63	■■■■□ 3.93
PICALM-215	ENST00000531558	DUOX2	Q9NRD8	1548 aa		39.62	■■■■□ 3.93
PICALM-215	ENST00000531558	KIF3B	O15066	747 aa		39.62	■■■■□ 3.93
PICALM-215	ENST00000531558	CHIC2	Q9UKJ5	165 aa		39.6	■■■■□ 3.93
PICALM-215	ENST00000531558	ANKRD30A	Q9BXX3	1397 aa		39.59	■■■■□ 3.93
PICALM-215	ENST00000531558	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	39.59	■■■■□ 3.93	2e-22	■□□□□ 9.6
PICALM-215	ENST00000531558	PLPPR3	Q6T4P5	718 aa		39.59	■■■■□ 3.93
PICALM-215	ENST00000531558	ADGRL2	O95490	1459 aa		39.57	■■■■□ 3.93
PICALM-215	ENST00000531558	RRP7BP	Q9NSQ0	103 aa		39.57	■■■■□ 3.93
PICALM-215	ENST00000531558	PPP6R1	Q9UPN7	881 aa		39.57	■■■■□ 3.93
PICALM-215	ENST00000531558	EIF2AK4	Q9P2K8	1649 aa	Known RBP	39.56	■■■■□ 3.92
PICALM-215	ENST00000531558	RRBP1	Q9P2E9	1410 aa	Known RBP	39.56	■■■■□ 3.92
PICALM-215	ENST00000531558	NCOA1	Q15788	1441 aa		39.55	■■■■□ 3.92
PICALM-215	ENST00000531558	CEBPA	P49715	358 aa	Predicted RBP	39.53	■■■■□ 3.92

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