RNA–Protein interactions for RNA: ENST00000531539.5

FOXR1-202, Transcript of forkhead box R1, humanhuman

TSL 1 (best)

Gene FOXR1, Length 1,053 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXR1-202ENST00000531539 CFAP74Q9C0B2 1584 aa22.83■■□□□ 1.25
FOXR1-202ENST00000531539 CCNB3Q8WWL7 1395 aa22.81■■□□□ 1.24
FOXR1-202ENST00000531539 CFDP1Q9UEE9 299 aaPredicted RBP22.8■■□□□ 1.24
FOXR1-202ENST00000531539 APLP2Q06481 763 aa22.79■■□□□ 1.24
FOXR1-202ENST00000531539 AFAP1Q8N556 730 aa22.79■■□□□ 1.24
FOXR1-202ENST00000531539 MYT1LQ9UL68 1186 aa22.79■■□□□ 1.24
FOXR1-202ENST00000531539 KANK4Q5T7N3 995 aaPredicted RBP22.76■■□□□ 1.23
FOXR1-202ENST00000531539 GPATCH8Q9UKJ3 1502 aaKnown RBP22.76■■□□□ 1.23
FOXR1-202ENST00000531539 ARID4BQ4LE39 1312 aaPredicted RBP22.76■■□□□ 1.23
FOXR1-202ENST00000531539 CDC42BPBQ9Y5S2 1711 aa22.75■■□□□ 1.23
FOXR1-202ENST00000531539 FRMPD1Q5SYB0 1578 aa22.75■■□□□ 1.23
FOXR1-202ENST00000531539 HNRNPMP52272 730 aaKnown RBP eCLIP22.73■■□□□ 1.23
FOXR1-202ENST00000531539 POGZQ7Z3K3 1410 aa22.73■■□□□ 1.23
FOXR1-202ENST00000531539 EHBP1L1Q8N3D4 1523 aa22.72■■□□□ 1.23
FOXR1-202ENST00000531539 TIAM1Q13009 1591 aa22.72■■□□□ 1.23
FOXR1-202ENST00000531539 RICTORQ6R327 1708 aa22.71■■□□□ 1.23
FOXR1-202ENST00000531539 PREX2Q70Z35 1606 aa22.71■■□□□ 1.23
FOXR1-202ENST00000531539 CDC42BPAQ5VT25 1732 aa22.7■■□□□ 1.22
FOXR1-202ENST00000531539 ZNF644Q9H582 1327 aaPredicted RBP22.68■■□□□ 1.22
FOXR1-202ENST00000531539 ARHGEF12Q9NZN5 1544 aa22.67■■□□□ 1.22
FOXR1-202ENST00000531539 LRRC9Q6ZRR7 1453 aa22.67■■□□□ 1.22
FOXR1-202ENST00000531539 YEATS2Q9ULM3 1422 aa22.67■■□□□ 1.22
FOXR1-202ENST00000531539 TRAPPC8Q9Y2L5 1435 aa22.66■■□□□ 1.22
FOXR1-202ENST00000531539 NCOA2Q15596 1464 aa22.66■■□□□ 1.22
FOXR1-202ENST00000531539 ZNF518AQ6AHZ1 1483 aa22.66■■□□□ 1.22
FOXR1-202ENST00000531539 MAGI2Q86UL8 1455 aa22.66■■□□□ 1.22
FOXR1-202ENST00000531539 MAP3K1Q13233 1512 aa22.64■■□□□ 1.21
FOXR1-202ENST00000531539 ZMYM4Q5VZL5 1548 aa22.63■■□□□ 1.21
FOXR1-202ENST00000531539 ZFYVE16Q7Z3T8 1539 aa22.63■■□□□ 1.21
FOXR1-202ENST00000531539 SUPT6HQ7KZ85 1726 aaKnown RBP22.62■■□□□ 1.21
FOXR1-202ENST00000531539 MLECQ14165 292 aa22.61■■□□□ 1.21
FOXR1-202ENST00000531539 ABCC1P33527 1531 aa22.61■■□□□ 1.21
FOXR1-202ENST00000531539 SAMD9LQ8IVG5 1584 aa22.6■■□□□ 1.21
FOXR1-202ENST00000531539 ATP10AO60312 1499 aa22.6■■□□□ 1.21
FOXR1-202ENST00000531539 SPAG9O60271 1321 aaKnown RBP22.59■■□□□ 1.21
FOXR1-202ENST00000531539 PLEKHH2Q8IVE3 1493 aa22.59■■□□□ 1.21
FOXR1-202ENST00000531539 KIAA1107Q9UPP5 1409 aa22.58■■□□□ 1.21
FOXR1-202ENST00000531539 ARHGEF40Q8TER5 1519 aa22.58■■□□□ 1.21
FOXR1-202ENST00000531539 SYCP2Q9BX26 1530 aa22.56■■□□□ 1.2
FOXR1-202ENST00000531539 ITSN2Q9NZM3 1697 aa22.55■■□□□ 1.2
FOXR1-202ENST00000531539 MLH3Q9UHC1 1453 aa22.55■■□□□ 1.2
FOXR1-202ENST00000531539 KDM5CP41229 1560 aa22.55■■□□□ 1.2
FOXR1-202ENST00000531539 C9orf84Q5VXU9 1444 aa22.52■■□□□ 1.2
FOXR1-202ENST00000531539 RSPH4AQ5TD94 716 aa22.51■■□□□ 1.19
FOXR1-202ENST00000531539 HECW2Q9P2P5 1572 aa22.5■■□□□ 1.19
FOXR1-202ENST00000531539 PLPPR3Q6T4P5 718 aa22.49■■□□□ 1.19
FOXR1-202ENST00000531539 MBD5Q9P267 1494 aa22.48■■□□□ 1.19
FOXR1-202ENST00000531539 TSPY4P0CV99 314 aa22.48■■□□□ 1.19
FOXR1-202ENST00000531539 TSPY10P0CW01 314 aa22.48■■□□□ 1.19
FOXR1-202ENST00000531539 MYOM3Q5VTT5 1437 aa22.47■■□□□ 1.19
FOXR1-202ENST00000531539 CAMSAP2Q08AD1 1489 aa22.47■■□□□ 1.19
FOXR1-202ENST00000531539 BCORL1Q5H9F3 1711 aa22.46■■□□□ 1.19
FOXR1-202ENST00000531539 PPARGC1BQ86YN6 1023 aaKnown RBP22.46■■□□□ 1.19
FOXR1-202ENST00000531539 DIP2CQ9Y2E4 1556 aa22.46■■□□□ 1.19
FOXR1-202ENST00000531539 ADAMTSL3P82987 1691 aa22.45■■□□□ 1.18
FOXR1-202ENST00000531539 SIGLEC1Q9BZZ2 1709 aa22.45■■□□□ 1.18
FOXR1-202ENST00000531539 KIDINS220Q9ULH0 1771 aa22.44■■□□□ 1.18
FOXR1-202ENST00000531539 MIA2Q96PC5 1412 aa22.43■■□□□ 1.18
FOXR1-202ENST00000531539 ABCA6Q8N139 1617 aa22.42■■□□□ 1.18
FOXR1-202ENST00000531539 PTPRMP28827 1452 aa22.41■■□□□ 1.18
FOXR1-202ENST00000531539 ATP7AQ04656 1500 aa22.41■■□□□ 1.18
FOXR1-202ENST00000531539 ESF1Q9H501 851 aaKnown RBP22.4■■□□□ 1.18
FOXR1-202ENST00000531539 MADDQ8WXG6 1647 aa22.39■■□□□ 1.18
FOXR1-202ENST00000531539 CCDC141Q6ZP82 1450 aa22.39■■□□□ 1.17
FOXR1-202ENST00000531539 RTEL1-TNFRSF6BF6WH68 1400 aa22.38■■□□□ 1.17
FOXR1-202ENST00000531539 GGT6Q6P531 493 aa22.36■■□□□ 1.17
FOXR1-202ENST00000531539 A2MP01023 1474 aa22.35■■□□□ 1.17
FOXR1-202ENST00000531539 CEBPAP49715 358 aaPredicted RBP22.35■■□□□ 1.17
FOXR1-202ENST00000531539 REREQ9P2R6 1566 aa22.34■■□□□ 1.17
FOXR1-202ENST00000531539 AGLP35573 1532 aa22.34■■□□□ 1.17
FOXR1-202ENST00000531539 INO80Q9ULG1 1556 aaPredicted RBP22.33■■□□□ 1.17
FOXR1-202ENST00000531539 RIMS1Q86UR5 1692 aaKnown RBP22.33■■□□□ 1.17
FOXR1-202ENST00000531539 FGD6Q6ZV73 1430 aa22.33■■□□□ 1.17
FOXR1-202ENST00000531539 FAM50AQ14320 339 aaKnown RBP22.33■■□□□ 1.17
FOXR1-202ENST00000531539 DHX29Q7Z478 1369 aaKnown RBP22.33■■□□□ 1.17
FOXR1-202ENST00000531539 ARHGEF5Q12774 1597 aa22.32■■□□□ 1.16
FOXR1-202ENST00000531539 KIF3BO15066 747 aa22.3■■□□□ 1.16
FOXR1-202ENST00000531539 PTPN23Q9H3S7 1636 aa22.29■■□□□ 1.16
FOXR1-202ENST00000531539 CHIC2Q9UKJ5 165 aa22.29■■□□□ 1.16
FOXR1-202ENST00000531539 ABCC5O15440 1437 aa22.26■■□□□ 1.15
FOXR1-202ENST00000531539 FER1L4A9Z1Z3 1794 aa22.26■■□□□ 1.15
FOXR1-202ENST00000531539 RRP7BPQ9NSQ0 103 aa22.26■■□□□ 1.15
FOXR1-202ENST00000531539 ADGBQ8N7X0 1667 aa22.24■■□□□ 1.15
FOXR1-202ENST00000531539 TCOF1Q13428 1488 aaKnown RBP22.24■■□□□ 1.15
FOXR1-202ENST00000531539 PPP6R1Q9UPN7 881 aa22.23■■□□□ 1.15
FOXR1-202ENST00000531539 DAPK1P53355 1430 aa22.21■■□□□ 1.15
FOXR1-202ENST00000531539 PLXNC1O60486 1568 aa22.21■■□□□ 1.15
FOXR1-202ENST00000531539 ZMYM3Q14202 1370 aa22.19■■□□□ 1.14
FOXR1-202ENST00000531539 CNTLNQ9NXG0 1405 aa22.19■■□□□ 1.14
FOXR1-202ENST00000531539 MAST1Q9Y2H9 1570 aa22.19■■□□□ 1.14
FOXR1-202ENST00000531539 WASHC2CQ9Y4E1 1318 aa22.16■■□□□ 1.14
FOXR1-202ENST00000531539 ITGAEP38570 1179 aa22.16■■□□□ 1.14
FOXR1-202ENST00000531539 HSPA2P54652 639 aa22.15■■□□□ 1.14
FOXR1-202ENST00000531539 ANKRD30AQ9BXX3 1397 aa22.14■■□□□ 1.14
FOXR1-202ENST00000531539 KIF15Q9NS87 1388 aa22.14■■□□□ 1.14
FOXR1-202ENST00000531539 DNMT1P26358 1616 aaKnown RBP22.13■■□□□ 1.13
FOXR1-202ENST00000531539 SHANK2Q9UPX8 1470 aa22.12■■□□□ 1.13
FOXR1-202ENST00000531539 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.11■■□□□ 1.13
FOXR1-202ENST00000531539 DUOX2Q9NRD8 1548 aa22.1■■□□□ 1.13
FOXR1-202ENST00000531539 NCOA1Q15788 1441 aa22.09■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms