RNA–Protein interactions for RNA: ENST00000530618.1

SSBP3-213, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 4

Gene SSBP3, Length 524 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-213ENST00000530618 DENND4BO75064 1496 aaPredicted RBP7.77□□□□□ -1.17
SSBP3-213ENST00000530618 ZFYVE16Q7Z3T8 1539 aa7.76□□□□□ -1.17
SSBP3-213ENST00000530618 KDM5CP41229 1560 aa7.76□□□□□ -1.17
SSBP3-213ENST00000530618 RNF39Q9H2S5 420 aa7.75□□□□□ -1.17
SSBP3-213ENST00000530618 POGZQ7Z3K3 1410 aa7.75□□□□□ -1.17
SSBP3-213ENST00000530618 ARHGEF12Q9NZN5 1544 aa7.74□□□□□ -1.17
SSBP3-213ENST00000530618 PLCH2O75038 1416 aa7.74□□□□□ -1.17
SSBP3-213ENST00000530618 CDC42BPAQ5VT25 1732 aa7.74□□□□□ -1.17
SSBP3-213ENST00000530618 MAGI2Q86UL8 1455 aa7.74□□□□□ -1.17
SSBP3-213ENST00000530618 PREX2Q70Z35 1606 aa7.74□□□□□ -1.17
SSBP3-213ENST00000530618 FAM9AQ8IZU1 332 aaPredicted RBP7.73□□□□□ -1.17
SSBP3-213ENST00000530618 ABCA6Q8N139 1617 aa7.73□□□□□ -1.17
SSBP3-213ENST00000530618 ITSN2Q9NZM3 1697 aa7.73□□□□□ -1.17
SSBP3-213ENST00000530618 REREQ9P2R6 1566 aa7.72□□□□□ -1.17
SSBP3-213ENST00000530618 DIP2CQ9Y2E4 1556 aa7.72□□□□□ -1.17
SSBP3-213ENST00000530618 PREX1Q8TCU6 1659 aa7.71□□□□□ -1.18
SSBP3-213ENST00000530618 STRCQ7RTU9 1775 aa7.71□□□□□ -1.18
SSBP3-213ENST00000530618 KIDINS220Q9ULH0 1771 aa7.71□□□□□ -1.18
SSBP3-213ENST00000530618 TROQ12816 1431 aaPredicted RBP7.7□□□□□ -1.18
SSBP3-213ENST00000530618 FMN1Q68DA7 1419 aa7.7□□□□□ -1.18
SSBP3-213ENST00000530618 SCAPERQ9BY12 1400 aa7.7□□□□□ -1.18
SSBP3-213ENST00000530618 ABCC1P33527 1531 aa7.7□□□□□ -1.18
SSBP3-213ENST00000530618 PLEKHD1A6NEE1 506 aa7.7□□□□□ -1.18
SSBP3-213ENST00000530618 RANGAP1P46060 587 aaPredicted RBP7.7□□□□□ -1.18
SSBP3-213ENST00000530618 UBTFP17480 764 aaKnown RBP7.69□□□□□ -1.18
SSBP3-213ENST00000530618 C3P01024 1663 aa7.69□□□□□ -1.18
SSBP3-213ENST00000530618 ATP10AO60312 1499 aa7.68□□□□□ -1.18
SSBP3-213ENST00000530618 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.68□□□□□ -1.18
SSBP3-213ENST00000530618 HNRNPUL2Q1KMD3 747 aaKnown RBP7.68□□□□□ -1.18
SSBP3-213ENST00000530618 C9orf84Q5VXU9 1444 aa7.68□□□□□ -1.18
SSBP3-213ENST00000530618 SETD1BQ9UPS6 1966 aaKnown RBP7.68□□□□□ -1.18
SSBP3-213ENST00000530618 CASKIN1Q8WXD9 1431 aa7.67□□□□□ -1.18
SSBP3-213ENST00000530618 ZNF518AQ6AHZ1 1483 aa7.67□□□□□ -1.18
SSBP3-213ENST00000530618 ARHGAP5Q13017 1502 aa7.67□□□□□ -1.18
SSBP3-213ENST00000530618 SAMD9LQ8IVG5 1584 aa7.67□□□□□ -1.18
SSBP3-213ENST00000530618 TRAPPC8Q9Y2L5 1435 aa7.66□□□□□ -1.18
SSBP3-213ENST00000530618 MLH3Q9UHC1 1453 aa7.66□□□□□ -1.18
SSBP3-213ENST00000530618 AGLP35573 1532 aa7.66□□□□□ -1.18
SSBP3-213ENST00000530618 FYCO1Q9BQS8 1478 aa7.65□□□□□ -1.18
SSBP3-213ENST00000530618 MROH2AA6NES4 1674 aa7.64□□□□□ -1.19
SSBP3-213ENST00000530618 PLXNC1O60486 1568 aa7.64□□□□□ -1.19
SSBP3-213ENST00000530618 INO80Q9ULG1 1556 aaPredicted RBP7.64□□□□□ -1.19
SSBP3-213ENST00000530618 CCDC18Q5T9S5 1454 aa7.64□□□□□ -1.19
SSBP3-213ENST00000530618 ARID4BQ4LE39 1312 aaPredicted RBP7.64□□□□□ -1.19
SSBP3-213ENST00000530618 FBXO41Q8TF61 875 aa7.64□□□□□ -1.19
SSBP3-213ENST00000530618 HSPA2P54652 639 aa7.63□□□□□ -1.19
SSBP3-213ENST00000530618 PLSCR2Q9NRY7 297 aa7.63□□□□□ -1.19
SSBP3-213ENST00000530618 PPP6R1Q9UPN7 881 aa7.63□□□□□ -1.19
SSBP3-213ENST00000530618 EFCAB2Q5VUJ9 269 aa7.62□□□□□ -1.19
SSBP3-213ENST00000530618 AFAP1Q8N556 730 aa7.62□□□□□ -1.19
SSBP3-213ENST00000530618 EHMT2Q96KQ7 1210 aa7.62□□□□□ -1.19
SSBP3-213ENST00000530618 SYCP2Q9BX26 1530 aa7.62□□□□□ -1.19
SSBP3-213ENST00000530618 GPATCH8Q9UKJ3 1502 aaKnown RBP7.62□□□□□ -1.19
SSBP3-213ENST00000530618 CLIP1P30622 1438 aa7.61□□□□□ -1.19
SSBP3-213ENST00000530618 TIAM1Q13009 1591 aa7.61□□□□□ -1.19
SSBP3-213ENST00000530618 SUPT6HQ7KZ85 1726 aaKnown RBP7.61□□□□□ -1.19
SSBP3-213ENST00000530618 ZNF142P52746 1687 aaPredicted RBP7.6□□□□□ -1.19
SSBP3-213ENST00000530618 ADGBQ8N7X0 1667 aa7.6□□□□□ -1.19
SSBP3-213ENST00000530618 MLECQ14165 292 aa7.6□□□□□ -1.19
SSBP3-213ENST00000530618 LTBP4Q8N2S1 1624 aa7.6□□□□□ -1.19
SSBP3-213ENST00000530618 CEBPAP49715 358 aaPredicted RBP7.59□□□□□ -1.19
SSBP3-213ENST00000530618 CLTCQ00610 1675 aaKnown RBP7.59□□□□□ -1.19
SSBP3-213ENST00000530618 ATP7AQ04656 1500 aa7.58□□□□□ -1.2
SSBP3-213ENST00000530618 MYO3AQ8NEV4 1616 aa7.58□□□□□ -1.2
SSBP3-213ENST00000530618 CDK11AQ9UQ88 783 aaPredicted RBP7.57□□□□□ -1.2
SSBP3-213ENST00000530618 MBD5Q9P267 1494 aa7.56□□□□□ -1.2
SSBP3-213ENST00000530618 UHRF1BP1Q6BDS2 1440 aa7.56□□□□□ -1.2
SSBP3-213ENST00000530618 KIAA1107Q9UPP5 1409 aa7.56□□□□□ -1.2
SSBP3-213ENST00000530618 ATP1B4Q9UN42 357 aaPredicted RBP7.56□□□□□ -1.2
SSBP3-213ENST00000530618 PTPRTO14522 1441 aa7.55□□□□□ -1.2
SSBP3-213ENST00000530618 NCOA1Q15788 1441 aa7.55□□□□□ -1.2
SSBP3-213ENST00000530618 PLPPR3Q6T4P5 718 aa7.55□□□□□ -1.2
SSBP3-213ENST00000530618 EHBP1L1Q8N3D4 1523 aa7.55□□□□□ -1.2
SSBP3-213ENST00000530618 CNTLNQ9NXG0 1405 aa7.54□□□□□ -1.2
SSBP3-213ENST00000530618 CERKQ8TCT0 537 aa7.54□□□□□ -1.2
SSBP3-213ENST00000530618 NPATQ14207 1427 aa7.53□□□□□ -1.2
SSBP3-213ENST00000530618 CEP162Q5TB80 1403 aa7.53□□□□□ -1.2
SSBP3-213ENST00000530618 CAMSAP1Q5T5Y3 1602 aa7.53□□□□□ -1.2
SSBP3-213ENST00000530618 LOC105371045A0A1W2PR82 267 aa7.53□□□□□ -1.2
SSBP3-213ENST00000530618 A2MP01023 1474 aa7.53□□□□□ -1.2
SSBP3-213ENST00000530618 PLEKHH2Q8IVE3 1493 aa7.53□□□□□ -1.2
SSBP3-213ENST00000530618 CEP170BQ9Y4F5 1589 aaPredicted RBP7.53□□□□□ -1.2
SSBP3-213ENST00000530618 PTPRKQ15262 1439 aa7.52□□□□□ -1.2
SSBP3-213ENST00000530618 POLR1AO95602 1720 aaPredicted RBP7.52□□□□□ -1.2
SSBP3-213ENST00000530618 NEURL4Q96JN8 1562 aa7.52□□□□□ -1.21
SSBP3-213ENST00000530618 TCOF1Q13428 1488 aaKnown RBP7.52□□□□□ -1.21
SSBP3-213ENST00000530618 DMRT2Q9Y5R5 561 aa7.52□□□□□ -1.21
SSBP3-213ENST00000530618 IQSEC2Q5JU85 1478 aa7.51□□□□□ -1.21
SSBP3-213ENST00000530618 HNRNPMP52272 730 aaKnown RBP eCLIP7.51□□□□□ -1.21
SSBP3-213ENST00000530618 APLP2Q06481 763 aa7.51□□□□□ -1.21
SSBP3-213ENST00000530618 C1QBPQ07021 282 aaKnown RBP7.51□□□□□ -1.21
SSBP3-213ENST00000530618 DNMT1P26358 1616 aaKnown RBP7.51□□□□□ -1.21
SSBP3-213ENST00000530618 MROH1Q8NDA8 1641 aa7.51□□□□□ -1.21
SSBP3-213ENST00000530618 ZNF644Q9H582 1327 aaPredicted RBP7.51□□□□□ -1.21
SSBP3-213ENST00000530618 ARHGEF5Q12774 1597 aa7.5□□□□□ -1.21
SSBP3-213ENST00000530618 PLA2R1Q13018 1463 aa7.5□□□□□ -1.21
SSBP3-213ENST00000530618 ZMYM3Q14202 1370 aa7.5□□□□□ -1.21
SSBP3-213ENST00000530618 RNF17Q9BXT8 1623 aaKnown RBP7.5□□□□□ -1.21
SSBP3-213ENST00000530618 RTEL1-TNFRSF6BF6WH68 1400 aa7.5□□□□□ -1.21
SSBP3-213ENST00000530618 SPAG9O60271 1321 aaKnown RBP7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms