RNA–Protein interactions for RNA: ENST00000530442.5

CAPN1-218, Transcript of calpain 1, humanhuman

TSL 2

Gene CAPN1, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-218ENST00000530442 ARHGAP5Q13017 1502 aa17.26■□□□□ 0.35
CAPN1-218ENST00000530442 GPATCH8Q9UKJ3 1502 aaKnown RBP17.25■□□□□ 0.35
CAPN1-218ENST00000530442 APLP2Q06481 763 aa17.24■□□□□ 0.35
CAPN1-218ENST00000530442 COL17A1Q9UMD9 1497 aaPredicted RBP17.22■□□□□ 0.35
CAPN1-218ENST00000530442 SAMD9LQ8IVG5 1584 aa17.22■□□□□ 0.35
CAPN1-218ENST00000530442 FRMPD1Q5SYB0 1578 aa17.21■□□□□ 0.35
CAPN1-218ENST00000530442 CCNB3Q8WWL7 1395 aa17.21■□□□□ 0.35
CAPN1-218ENST00000530442 ABCC1P33527 1531 aa17.21■□□□□ 0.34
CAPN1-218ENST00000530442 RICTORQ6R327 1708 aa17.2■□□□□ 0.34
CAPN1-218ENST00000530442 AKNAQ7Z591 1439 aa17.2■□□□□ 0.34
CAPN1-218ENST00000530442 ADGRL1O94910 1474 aa17.18■□□□□ 0.34
CAPN1-218ENST00000530442 PHLDB1Q86UU1 1377 aa17.17■□□□□ 0.34
CAPN1-218ENST00000530442 MYOM3Q5VTT5 1437 aa17.15■□□□□ 0.34
CAPN1-218ENST00000530442 SYCP2Q9BX26 1530 aa17.15■□□□□ 0.34
CAPN1-218ENST00000530442 EFCAB2Q5VUJ9 269 aa17.14■□□□□ 0.33
CAPN1-218ENST00000530442 ARHGEF12Q9NZN5 1544 aa17.13■□□□□ 0.33
CAPN1-218ENST00000530442 POGZQ7Z3K3 1410 aa17.13■□□□□ 0.33
CAPN1-218ENST00000530442 DENND4BO75064 1496 aaPredicted RBP17.12■□□□□ 0.33
CAPN1-218ENST00000530442 CAMSAP2Q08AD1 1489 aa17.12■□□□□ 0.33
CAPN1-218ENST00000530442 SCAPERQ9BY12 1400 aa17.12■□□□□ 0.33
CAPN1-218ENST00000530442 ZMYM4Q5VZL5 1548 aa17.11■□□□□ 0.33
CAPN1-218ENST00000530442 KDM5CP41229 1560 aa17.11■□□□□ 0.33
CAPN1-218ENST00000530442 CFDP1Q9UEE9 299 aaPredicted RBP17.11■□□□□ 0.33
CAPN1-218ENST00000530442 PTPN23Q9H3S7 1636 aa17.1■□□□□ 0.33
CAPN1-218ENST00000530442 MIA2Q96PC5 1412 aa17.09■□□□□ 0.33
CAPN1-218ENST00000530442 PLEKHH2Q8IVE3 1493 aa17.09■□□□□ 0.33
CAPN1-218ENST00000530442 ZNF518AQ6AHZ1 1483 aa17.08■□□□□ 0.32
CAPN1-218ENST00000530442 FGD6Q6ZV73 1430 aa17.08■□□□□ 0.32
CAPN1-218ENST00000530442 KIAA1107Q9UPP5 1409 aa17.07■□□□□ 0.32
CAPN1-218ENST00000530442 PPARGC1BQ86YN6 1023 aaKnown RBP17.07■□□□□ 0.32
CAPN1-218ENST00000530442 ZNF777Q9ULD5 760 aaPredicted RBP17.07■□□□□ 0.32
CAPN1-218ENST00000530442 HECW2Q9P2P5 1572 aa17.06■□□□□ 0.32
CAPN1-218ENST00000530442 ARHGEF40Q8TER5 1519 aa17.06■□□□□ 0.32
CAPN1-218ENST00000530442 TRAPPC8Q9Y2L5 1435 aa17.06■□□□□ 0.32
CAPN1-218ENST00000530442 ZNF644Q9H582 1327 aaPredicted RBP17.06■□□□□ 0.32
CAPN1-218ENST00000530442 RAPGEF3O95398 923 aa17.06■□□□□ 0.32
CAPN1-218ENST00000530442 TCOF1Q13428 1488 aaKnown RBP17.05■□□□□ 0.32
CAPN1-218ENST00000530442 MBD5Q9P267 1494 aa17.05■□□□□ 0.32
CAPN1-218ENST00000530442 ARHGEF5Q12774 1597 aa17.05■□□□□ 0.32
CAPN1-218ENST00000530442 CROCC2H7BZ55 1655 aa17.04■□□□□ 0.32
CAPN1-218ENST00000530442 INO80Q9ULG1 1556 aaPredicted RBP17.03■□□□□ 0.32
CAPN1-218ENST00000530442 KIDINS220Q9ULH0 1771 aa17.02■□□□□ 0.32
CAPN1-218ENST00000530442 ZFYVE16Q7Z3T8 1539 aa17.02■□□□□ 0.32
CAPN1-218ENST00000530442 CCDC141Q6ZP82 1450 aa17.01■□□□□ 0.31
CAPN1-218ENST00000530442 ABCA6Q8N139 1617 aa17.01■□□□□ 0.31
CAPN1-218ENST00000530442 DNMT1P26358 1616 aaKnown RBP17■□□□□ 0.31
CAPN1-218ENST00000530442 MAGI2Q86UL8 1455 aa16.99■□□□□ 0.31
CAPN1-218ENST00000530442 DIP2CQ9Y2E4 1556 aa16.99■□□□□ 0.31
CAPN1-218ENST00000530442 YEATS2Q9ULM3 1422 aa16.99■□□□□ 0.31
CAPN1-218ENST00000530442 HNRNPMP52272 730 aaKnown RBP eCLIP16.99■□□□□ 0.31
CAPN1-218ENST00000530442 AFAP1Q8N556 730 aa16.99■□□□□ 0.31
CAPN1-218ENST00000530442 MLH3Q9UHC1 1453 aa16.99■□□□□ 0.31
CAPN1-218ENST00000530442 ATP7AQ04656 1500 aa16.98■□□□□ 0.31
CAPN1-218ENST00000530442 SIGLEC1Q9BZZ2 1709 aa16.98■□□□□ 0.31
CAPN1-218ENST00000530442 MAST1Q9Y2H9 1570 aa16.97■□□□□ 0.31
CAPN1-218ENST00000530442 ADGBQ8N7X0 1667 aa16.95■□□□□ 0.3
CAPN1-218ENST00000530442 RRBP1Q9P2E9 1410 aaKnown RBP16.95■□□□□ 0.3
CAPN1-218ENST00000530442 SHANK2Q9UPX8 1470 aa16.93■□□□□ 0.3
CAPN1-218ENST00000530442 DAPK1P53355 1430 aa16.93■□□□□ 0.3
CAPN1-218ENST00000530442 REREQ9P2R6 1566 aa16.93■□□□□ 0.3
CAPN1-218ENST00000530442 ABCC5O15440 1437 aa16.92■□□□□ 0.3
CAPN1-218ENST00000530442 PLXNC1O60486 1568 aa16.92■□□□□ 0.3
CAPN1-218ENST00000530442 SPAG9O60271 1321 aaKnown RBP16.91■□□□□ 0.3
CAPN1-218ENST00000530442 RTEL1-TNFRSF6BF6WH68 1400 aa16.9■□□□□ 0.3
CAPN1-218ENST00000530442 C9orf84Q5VXU9 1444 aa16.9■□□□□ 0.3
CAPN1-218ENST00000530442 ATP10AO60312 1499 aa16.89■□□□□ 0.29
CAPN1-218ENST00000530442 RSPH4AQ5TD94 716 aa16.89■□□□□ 0.29
CAPN1-218ENST00000530442 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.89■□□□□ 0.29
CAPN1-218ENST00000530442 FAM50AQ14320 339 aaKnown RBP16.88■□□□□ 0.29
CAPN1-218ENST00000530442 BCORL1Q5H9F3 1711 aa16.85■□□□□ 0.29
CAPN1-218ENST00000530442 MYT1LQ9UL68 1186 aa16.85■□□□□ 0.29
CAPN1-218ENST00000530442 PTPRKQ15262 1439 aa16.85■□□□□ 0.29
CAPN1-218ENST00000530442 ADGRL2O95490 1459 aa16.85■□□□□ 0.29
CAPN1-218ENST00000530442 A2MP01023 1474 aa16.84■□□□□ 0.29
CAPN1-218ENST00000530442 TSPY4P0CV99 314 aa16.83■□□□□ 0.28
CAPN1-218ENST00000530442 TSPY10P0CW01 314 aa16.83■□□□□ 0.28
CAPN1-218ENST00000530442 AGLP35573 1532 aa16.83■□□□□ 0.28
CAPN1-218ENST00000530442 ADAMTSL3P82987 1691 aa16.8■□□□□ 0.28
CAPN1-218ENST00000530442 EIF2AK4Q9P2K8 1649 aaKnown RBP16.8■□□□□ 0.28
CAPN1-218ENST00000530442 DUOX2Q9NRD8 1548 aa16.8■□□□□ 0.28
CAPN1-218ENST00000530442 KIF15Q9NS87 1388 aa16.78■□□□□ 0.28
CAPN1-218ENST00000530442 FER1L4A9Z1Z3 1794 aa16.78■□□□□ 0.28
CAPN1-218ENST00000530442 NCOA1Q15788 1441 aa16.78■□□□□ 0.28
CAPN1-218ENST00000530442 MADDQ8WXG6 1647 aa16.78■□□□□ 0.28
CAPN1-218ENST00000530442 DHX29Q7Z478 1369 aaKnown RBP16.77■□□□□ 0.27
CAPN1-218ENST00000530442 ANKRD30AQ9BXX3 1397 aa16.77■□□□□ 0.27
CAPN1-218ENST00000530442 CHIC2Q9UKJ5 165 aa16.76■□□□□ 0.27
CAPN1-218ENST00000530442 RNF17Q9BXT8 1623 aaKnown RBP16.76■□□□□ 0.27
CAPN1-218ENST00000530442 GCC2Q8IWJ2 1684 aa16.75■□□□□ 0.27
CAPN1-218ENST00000530442 ROCK1Q13464 1354 aa16.75■□□□□ 0.27
CAPN1-218ENST00000530442 ARID4BQ4LE39 1312 aaPredicted RBP16.74■□□□□ 0.27
CAPN1-218ENST00000530442 ERBINQ96RT1 1412 aa16.74■□□□□ 0.27
CAPN1-218ENST00000530442 ITGAEP38570 1179 aa16.74■□□□□ 0.27
CAPN1-218ENST00000530442 RIMS1Q86UR5 1692 aaKnown RBP16.74■□□□□ 0.27
CAPN1-218ENST00000530442 MROH1Q8NDA8 1641 aa16.74■□□□□ 0.27
CAPN1-218ENST00000530442 DEPDC5O75140 1603 aa16.73■□□□□ 0.27
CAPN1-218ENST00000530442 RRP7BPQ9NSQ0 103 aa16.71■□□□□ 0.27
CAPN1-218ENST00000530442 PRDM15P57071 1507 aaPredicted RBP16.7■□□□□ 0.26
CAPN1-218ENST00000530442 CLTCQ00610 1675 aaKnown RBP16.69■□□□□ 0.26
CAPN1-218ENST00000530442 KDM4FA0A1W2PPD8 638 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 118.4 ms