RNA–Protein interactions for RNA: ENST00000529813.1

USP47-208, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2

Gene USP47, Length 3,123 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-208ENST00000529813 MAGI3Q5TCQ9 1506 aa7.15□□□□□ -1.26
USP47-208ENST00000529813 DENND4BO75064 1496 aaPredicted RBP7.15□□□□□ -1.26
USP47-208ENST00000529813 ADGRL1O94910 1474 aa7.15□□□□□ -1.26
USP47-208ENST00000529813 VPS8Q8N3P4 1428 aa7.15□□□□□ -1.26
USP47-208ENST00000529813 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.15□□□□□ -1.27
USP47-208ENST00000529813 PLCH2O75038 1416 aa7.14□□□□□ -1.27
USP47-208ENST00000529813 SENP3Q9H4L4 574 aaPredicted RBP7.14□□□□□ -1.27
USP47-208ENST00000529813 SPAG9O60271 1321 aaKnown RBP7.14□□□□□ -1.27
USP47-208ENST00000529813 GGT6Q6P531 493 aa7.13□□□□□ -1.27
USP47-208ENST00000529813 CHIC2Q9UKJ5 165 aa7.13□□□□□ -1.27
USP47-208ENST00000529813 TTC37Q6PGP7 1564 aa7.13□□□□□ -1.27
USP47-208ENST00000529813 KIF14Q15058 1648 aa7.13□□□□□ -1.27
USP47-208ENST00000529813 MAP3K4Q9Y6R4 1608 aa7.13□□□□□ -1.27
USP47-208ENST00000529813 TSPY4P0CV99 314 aa7.12□□□□□ -1.27
USP47-208ENST00000529813 TSPY10P0CW01 314 aa7.12□□□□□ -1.27
USP47-208ENST00000529813 PHLDB1Q86UU1 1377 aa7.12□□□□□ -1.27
USP47-208ENST00000529813 NEO1Q92859 1461 aa7.12□□□□□ -1.27
USP47-208ENST00000529813 CFAP43Q8NDM7 1665 aa7.12□□□□□ -1.27
USP47-208ENST00000529813 ABCA9Q8IUA7 1624 aa7.11□□□□□ -1.27
USP47-208ENST00000529813 YEATS2Q9ULM3 1422 aa7.11□□□□□ -1.27
USP47-208ENST00000529813 CEBPAP49715 358 aaPredicted RBP7.11□□□□□ -1.27
USP47-208ENST00000529813 PPRC1Q5VV67 1664 aaKnown RBP7.1□□□□□ -1.27
USP47-208ENST00000529813 TRAPPC8Q9Y2L5 1435 aa7.1□□□□□ -1.27
USP47-208ENST00000529813 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.09□□□□□ -1.27
USP47-208ENST00000529813 NCOA2Q15596 1464 aa7.09□□□□□ -1.28
USP47-208ENST00000529813 GPATCH8Q9UKJ3 1502 aaKnown RBP7.08□□□□□ -1.28
USP47-208ENST00000529813 ARAP3Q8WWN8 1544 aa7.08□□□□□ -1.28
USP47-208ENST00000529813 KIF3BO15066 747 aa7.08□□□□□ -1.28
USP47-208ENST00000529813 RRP7BPQ9NSQ0 103 aa7.07□□□□□ -1.28
USP47-208ENST00000529813 POGZQ7Z3K3 1410 aa7.07□□□□□ -1.28
USP47-208ENST00000529813 LRRC9Q6ZRR7 1453 aa7.07□□□□□ -1.28
USP47-208ENST00000529813 HSPA2P54652 639 aa7.06□□□□□ -1.28
USP47-208ENST00000529813 EHBP1L1Q8N3D4 1523 aa7.06□□□□□ -1.28
USP47-208ENST00000529813 ZNF518AQ6AHZ1 1483 aa7.06□□□□□ -1.28
USP47-208ENST00000529813 SYCP2Q9BX26 1530 aa7.05□□□□□ -1.28
USP47-208ENST00000529813 LRRIQ1Q96JM4 1722 aa7.05□□□□□ -1.28
USP47-208ENST00000529813 ZFYVE16Q7Z3T8 1539 aa7.05□□□□□ -1.28
USP47-208ENST00000529813 TIAM1Q13009 1591 aa7.04□□□□□ -1.28
USP47-208ENST00000529813 MYO5CQ9NQX4 1742 aa7.04□□□□□ -1.28
USP47-208ENST00000529813 ARHGEF12Q9NZN5 1544 aa7.04□□□□□ -1.28
USP47-208ENST00000529813 ATP10AO60312 1499 aa7.03□□□□□ -1.28
USP47-208ENST00000529813 RSPH4AQ5TD94 716 aa7.03□□□□□ -1.28
USP47-208ENST00000529813 WASHC2CQ9Y4E1 1318 aa7.02□□□□□ -1.29
USP47-208ENST00000529813 CFAP74Q9C0B2 1584 aa7.02□□□□□ -1.29
USP47-208ENST00000529813 MYOM3Q5VTT5 1437 aa7.02□□□□□ -1.29
USP47-208ENST00000529813 PLEKHH2Q8IVE3 1493 aa7.02□□□□□ -1.29
USP47-208ENST00000529813 C9orf84Q5VXU9 1444 aa7.02□□□□□ -1.29
USP47-208ENST00000529813 CAMSAP2Q08AD1 1489 aa7.01□□□□□ -1.29
USP47-208ENST00000529813 SUPT6HQ7KZ85 1726 aaKnown RBP7.01□□□□□ -1.29
USP47-208ENST00000529813 SAMD9LQ8IVG5 1584 aa7□□□□□ -1.29
USP47-208ENST00000529813 MAGI2Q86UL8 1455 aa7□□□□□ -1.29
USP47-208ENST00000529813 ABCC1P33527 1531 aa7□□□□□ -1.29
USP47-208ENST00000529813 FRMPD1Q5SYB0 1578 aa7□□□□□ -1.29
USP47-208ENST00000529813 KIAA1107Q9UPP5 1409 aa7□□□□□ -1.29
USP47-208ENST00000529813 PREX2Q70Z35 1606 aa7□□□□□ -1.29
USP47-208ENST00000529813 CDC42BPBQ9Y5S2 1711 aa7□□□□□ -1.29
USP47-208ENST00000529813 PTPRMP28827 1452 aa6.99□□□□□ -1.29
USP47-208ENST00000529813 CCDC141Q6ZP82 1450 aa6.99□□□□□ -1.29
USP47-208ENST00000529813 FBXO31Q5XUX0 539 aaPredicted RBP6.99□□□□□ -1.29
USP47-208ENST00000529813 CDC42BPAQ5VT25 1732 aa6.99□□□□□ -1.29
USP47-208ENST00000529813 STAG3Q9UJ98 1225 aa6.98□□□□□ -1.29
USP47-208ENST00000529813 FGD6Q6ZV73 1430 aa6.98□□□□□ -1.29
USP47-208ENST00000529813 A2MP01023 1474 aa6.98□□□□□ -1.29
USP47-208ENST00000529813 ARHGEF40Q8TER5 1519 aa6.98□□□□□ -1.29
USP47-208ENST00000529813 MLH3Q9UHC1 1453 aa6.98□□□□□ -1.29
USP47-208ENST00000529813 TRIM52Q96A61 297 aa6.98□□□□□ -1.29
USP47-208ENST00000529813 RICTORQ6R327 1708 aa6.98□□□□□ -1.29
USP47-208ENST00000529813 CHGAP10645 457 aaKnown RBP6.97□□□□□ -1.29
USP47-208ENST00000529813 KIF15Q9NS87 1388 aa6.97□□□□□ -1.29
USP47-208ENST00000529813 MBD5Q9P267 1494 aa6.97□□□□□ -1.29
USP47-208ENST00000529813 HECW2Q9P2P5 1572 aa6.97□□□□□ -1.29
USP47-208ENST00000529813 ATP7AQ04656 1500 aa6.97□□□□□ -1.29
USP47-208ENST00000529813 DHX29Q7Z478 1369 aaKnown RBP6.97□□□□□ -1.29
USP47-208ENST00000529813 BCANQ96GW7 911 aa6.96□□□□□ -1.29
USP47-208ENST00000529813 MIA2Q96PC5 1412 aa6.96□□□□□ -1.3
USP47-208ENST00000529813 ANKRD30AQ9BXX3 1397 aa6.96□□□□□ -1.3
USP47-208ENST00000529813 ZMYM3Q14202 1370 aa6.96□□□□□ -1.3
USP47-208ENST00000529813 MADDQ8WXG6 1647 aa6.96□□□□□ -1.3
USP47-208ENST00000529813 ZMYM4Q5VZL5 1548 aa6.95□□□□□ -1.3
USP47-208ENST00000529813 ABCC5O15440 1437 aa6.95□□□□□ -1.3
USP47-208ENST00000529813 ITSN2Q9NZM3 1697 aa6.95□□□□□ -1.3
USP47-208ENST00000529813 DIP2CQ9Y2E4 1556 aa6.95□□□□□ -1.3
USP47-208ENST00000529813 MAP3K1Q13233 1512 aa6.95□□□□□ -1.3
USP47-208ENST00000529813 RIMS1Q86UR5 1692 aaKnown RBP6.94□□□□□ -1.3
USP47-208ENST00000529813 ABCA6Q8N139 1617 aa6.94□□□□□ -1.3
USP47-208ENST00000529813 KDM5CP41229 1560 aa6.94□□□□□ -1.3
USP47-208ENST00000529813 DAPK1P53355 1430 aa6.94□□□□□ -1.3
USP47-208ENST00000529813 KANK1Q14678 1352 aa6.93□□□□□ -1.3
USP47-208ENST00000529813 RTEL1-TNFRSF6BF6WH68 1400 aa6.93□□□□□ -1.3
USP47-208ENST00000529813 PTPN23Q9H3S7 1636 aa6.92□□□□□ -1.3
USP47-208ENST00000529813 NCKAP5LQ9HCH0 1330 aa6.92□□□□□ -1.3
USP47-208ENST00000529813 UHRF1BP1Q6BDS2 1440 aa6.92□□□□□ -1.3
USP47-208ENST00000529813 KIDINS220Q9ULH0 1771 aa6.92□□□□□ -1.3
USP47-208ENST00000529813 BCORL1Q5H9F3 1711 aa6.91□□□□□ -1.3
USP47-208ENST00000529813 NUTM2DQ5VT03 806 aaPredicted RBP6.91□□□□□ -1.3
USP47-208ENST00000529813 CNTLNQ9NXG0 1405 aa6.9□□□□□ -1.3
USP47-208ENST00000529813 NUP155O75694 1391 aa6.9□□□□□ -1.3
USP47-208ENST00000529813 ANKRD50Q9ULJ7 1429 aa6.9□□□□□ -1.3
USP47-208ENST00000529813 PPP6R1Q9UPN7 881 aa6.9□□□□□ -1.3
USP47-208ENST00000529813 SIGLEC1Q9BZZ2 1709 aa6.9□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms