RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 STK24Q9Y6E0 443 aa7.68□□□□□ -1.18
CD44-229ENST00000528672 HS3ST6Q96QI5 342 aa7.67□□□□□ -1.18
CD44-229ENST00000528672 KRTAP3-3Q9BYR6 98 aa7.67□□□□□ -1.18
CD44-229ENST00000528672 KRTAP3-2Q9BYR7 98 aa7.67□□□□□ -1.18
CD44-229ENST00000528672 TSHZ2Q9NRE2 1034 aa7.67□□□□□ -1.18
CD44-229ENST00000528672 KDM2AQ9Y2K7 1162 aa7.67□□□□□ -1.18
CD44-229ENST00000528672 FAM205CA6NFA0 338 aa7.66□□□□□ -1.18
CD44-229ENST00000528672 BBXQ8WY36 941 aaPredicted RBP7.66□□□□□ -1.18
CD44-229ENST00000528672 EFCAB3Q8N7B9 438 aa7.65□□□□□ -1.18
CD44-229ENST00000528672 NLRP6P59044 892 aa7.64□□□□□ -1.19
CD44-229ENST00000528672 DPY19L2Q6NUT2 758 aa7.63□□□□□ -1.19
CD44-229ENST00000528672 FBXO22Q8NEZ5 403 aa7.61□□□□□ -1.19
CD44-229ENST00000528672 MFRPQ9BY79 579 aa7.6□□□□□ -1.19
CD44-229ENST00000528672 BOLA1Q9Y3E2 137 aa7.6□□□□□ -1.19
CD44-229ENST00000528672 HOXB3P14651 431 aaPredicted RBP7.59□□□□□ -1.19
CD44-229ENST00000528672 G3V3G9 751 aa7.58□□□□□ -1.2
CD44-229ENST00000528672 GTPBP6O43824 516 aaPredicted RBP7.58□□□□□ -1.2
CD44-229ENST00000528672 HOXB1P14653 301 aaPredicted RBP7.57□□□□□ -1.2
CD44-229ENST00000528672 SPRYD3Q8NCJ5 442 aa7.57□□□□□ -1.2
CD44-229ENST00000528672 PHF8Q9UPP1 1060 aa7.57□□□□□ -1.2
CD44-229ENST00000528672 MS4A4AQ96JQ5 239 aa7.56□□□□□ -1.2
CD44-229ENST00000528672 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.56□□□□□ -1.2
CD44-229ENST00000528672 ZNF710Q8N1W2 664 aa7.55□□□□□ -1.2
CD44-229ENST00000528672 DOK7Q18PE1 504 aa7.53□□□□□ -1.2
CD44-229ENST00000528672 ERBB3P21860 1342 aa7.52□□□□□ -1.2
CD44-229ENST00000528672 PPP1R37O75864 691 aa7.52□□□□□ -1.21
CD44-229ENST00000528672 CADPS2Q86UW7 1296 aa7.51□□□□□ -1.21
CD44-229ENST00000528672 MICALL2Q8IY33 904 aa7.5□□□□□ -1.21
CD44-229ENST00000528672 RIMBP2O15034 1052 aa7.48□□□□□ -1.21
CD44-229ENST00000528672 VARS2Q5ST30 1063 aaKnown RBP7.47□□□□□ -1.21
CD44-229ENST00000528672 RNF166Q96A37 237 aaPredicted RBP7.47□□□□□ -1.21
CD44-229ENST00000528672 ZSWIM6Q9HCJ5 1215 aa7.45□□□□□ -1.22
CD44-229ENST00000528672 TMEM92Q6UXU6 159 aa7.44□□□□□ -1.22
CD44-229ENST00000528672 ZNF687Q8N1G0 1237 aa7.44□□□□□ -1.22
CD44-229ENST00000528672 MYT1LQ9UL68 1186 aa7.44□□□□□ -1.22
CD44-229ENST00000528672 PRKCSHP14314 528 aaPredicted RBP7.43□□□□□ -1.22
CD44-229ENST00000528672 VSIG10Q8N0Z9 540 aa7.43□□□□□ -1.22
CD44-229ENST00000528672 GPR153Q6NV75 609 aa7.42□□□□□ -1.22
CD44-229ENST00000528672 KIF3CO14782 793 aa7.39□□□□□ -1.23
CD44-229ENST00000528672 PTGER2P43116 358 aa7.38□□□□□ -1.23
CD44-229ENST00000528672 TMC2Q8TDI7 906 aa7.36□□□□□ -1.23
CD44-229ENST00000528672 CRISPLD2Q9H0B8 497 aa7.36□□□□□ -1.23
CD44-229ENST00000528672 GPHNQ9NQX3 736 aaPredicted RBP7.36□□□□□ -1.23
CD44-229ENST00000528672 ARSIQ5FYB1 569 aa7.35□□□□□ -1.23
CD44-229ENST00000528672 FOXK1P85037 733 aa7.34□□□□□ -1.23
CD44-229ENST00000528672 ANKRD13DQ6ZTN6 518 aa7.34□□□□□ -1.23
CD44-229ENST00000528672 PDE4AP27815 886 aa7.33□□□□□ -1.24
CD44-229ENST00000528672 C2orf72A6NCS6 295 aa7.32□□□□□ -1.24
CD44-229ENST00000528672 ZNF316A6NFI3 1004 aaPredicted RBP7.32□□□□□ -1.24
CD44-229ENST00000528672 SLC34A2O95436 690 aa7.32□□□□□ -1.24
CD44-229ENST00000528672 MFSD10Q14728 455 aa7.32□□□□□ -1.24
CD44-229ENST00000528672 NCKAP5LQ9HCH0 1330 aa7.3□□□□□ -1.24
CD44-229ENST00000528672 KHSRPQ92945 711 aaKnown RBP eCLIP7.3□□□□□ -1.24
CD44-229ENST00000528672 LSM11P83369 360 aaKnown RBP eCLIP7.29□□□□□ -1.24
CD44-229ENST00000528672 DDX27Q96GQ7 796 aaKnown RBP7.28□□□□□ -1.24
CD44-229ENST00000528672 KCNV2Q8TDN2 545 aa7.27□□□□□ -1.25
CD44-229ENST00000528672 DSG2Q14126 1118 aa7.26□□□□□ -1.25
CD44-229ENST00000528672 PPP1R15BQ5SWA1 713 aa7.26□□□□□ -1.25
CD44-229ENST00000528672 PBX2P40425 430 aa7.25□□□□□ -1.25
CD44-229ENST00000528672 PLPP6Q8IY26 295 aa7.25□□□□□ -1.25
CD44-229ENST00000528672 PTCD2Q8WV60 388 aaKnown RBP7.25□□□□□ -1.25
CD44-229ENST00000528672 LARP6Q9BRS8 491 aaKnown RBP7.25□□□□□ -1.25
CD44-229ENST00000528672 CAMK2BQ13554 666 aa7.24□□□□□ -1.25
CD44-229ENST00000528672 BCANQ96GW7 911 aa7.23□□□□□ -1.25
CD44-229ENST00000528672 NUDT7P0C024 238 aa7.22□□□□□ -1.25
CD44-229ENST00000528672 TPRNQ4KMQ1 711 aa7.22□□□□□ -1.25
CD44-229ENST00000528672 TBC1D12O60347 775 aa7.21□□□□□ -1.26
CD44-229ENST00000528672 POTEEQ6S8J3 1075 aa7.21□□□□□ -1.26
CD44-229ENST00000528672 LHX6Q9UPM6 363 aa7.21□□□□□ -1.26
CD44-229ENST00000528672 ARIH1Q9Y4X5 557 aaPredicted RBP7.21□□□□□ -1.26
CD44-229ENST00000528672 OXER1Q8TDS5 423 aa7.2□□□□□ -1.26
CD44-229ENST00000528672 PLA2G2EQ9NZK7 142 aa7.2□□□□□ -1.26
CD44-229ENST00000528672 AXIN2Q9Y2T1 843 aa7.2□□□□□ -1.26
CD44-229ENST00000528672 WDR70Q9NW82 654 aa7.19□□□□□ -1.26
CD44-229ENST00000528672 HCSTQ9UBK5 93 aa7.19□□□□□ -1.26
CD44-229ENST00000528672 PCDHGA4Q9Y5G9 962 aa7.19□□□□□ -1.26
CD44-229ENST00000528672 P3H3Q8IVL6 736 aa7.17□□□□□ -1.26
CD44-229ENST00000528672 KDM4FA0A1W2PPD8 638 aa7.16□□□□□ -1.26
CD44-229ENST00000528672 PSDA5PKW4 1024 aaPredicted RBP7.16□□□□□ -1.26
CD44-229ENST00000528672 E2F4Q16254 413 aa7.16□□□□□ -1.26
CD44-229ENST00000528672 ARHGAP33O14559 1287 aa7.15□□□□□ -1.26
CD44-229ENST00000528672 ADGRD1Q6QNK2 874 aa7.15□□□□□ -1.26
CD44-229ENST00000528672 SEMA3EO15041 775 aa7.14□□□□□ -1.27
CD44-229ENST00000528672 EMILIN3Q9NT22 766 aa7.14□□□□□ -1.27
CD44-229ENST00000528672 ANO8Q9HCE9 1232 aaPredicted RBP7.13□□□□□ -1.27
CD44-229ENST00000528672 SPDYE16A6NNV3 312 aaPredicted RBP7.12□□□□□ -1.27
CD44-229ENST00000528672 NBR1Q14596 966 aa7.12□□□□□ -1.27
CD44-229ENST00000528672 ARHGEF1Q92888 912 aaKnown RBP7.12□□□□□ -1.27
CD44-229ENST00000528672 TK2O00142 265 aa7.11□□□□□ -1.27
CD44-229ENST00000528672 PDIA6Q15084 440 aa7.11□□□□□ -1.27
CD44-229ENST00000528672 MAP3K9P80192 1104 aa7.1□□□□□ -1.27
CD44-229ENST00000528672 HRO43593 1189 aa7.09□□□□□ -1.27
CD44-229ENST00000528672 EVI5O60447 810 aa7.08□□□□□ -1.28
CD44-229ENST00000528672 MLLT3P42568 568 aaPredicted RBP7.08□□□□□ -1.28
CD44-229ENST00000528672 DMRTA1Q5VZB9 504 aa7.08□□□□□ -1.28
CD44-229ENST00000528672 UPF1Q92900 1129 aaKnown RBP eCLIP7.08□□□□□ -1.28
CD44-229ENST00000528672 JPH4Q96JJ6 628 aa7.08□□□□□ -1.28
CD44-229ENST00000528672 DPYSL4O14531 572 aa7.07□□□□□ -1.28
CD44-229ENST00000528672 PSEN2P49810 448 aa7.06□□□□□ -1.28
CD44-229ENST00000528672 PPP4R3BQ5MIZ7 849 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms