RNA–Protein interactions for RNA: ENST00000525211.5

CD44-214, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 747 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-214ENST00000525211 ATXN8OSP0DMR3 200 aa10.21□□□□□ -0.77
CD44-214ENST00000525211 TRHP20396 242 aaPredicted RBP10.21□□□□□ -0.77
CD44-214ENST00000525211 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.21□□□□□ -0.78
CD44-214ENST00000525211 TTC37Q6PGP7 1564 aa10.2□□□□□ -0.78
CD44-214ENST00000525211 MAP3K1Q13233 1512 aa10.19□□□□□ -0.78
CD44-214ENST00000525211 MTUS2Q5JR59 1369 aa10.19□□□□□ -0.78
CD44-214ENST00000525211 PPRC1Q5VV67 1664 aaKnown RBP10.18□□□□□ -0.78
CD44-214ENST00000525211 GLI2P10070 1586 aa10.18□□□□□ -0.78
CD44-214ENST00000525211 EHBP1L1Q8N3D4 1523 aa10.17□□□□□ -0.78
CD44-214ENST00000525211 NCOA2Q15596 1464 aa10.17□□□□□ -0.78
CD44-214ENST00000525211 PHLDB1Q86UU1 1377 aa10.16□□□□□ -0.78
CD44-214ENST00000525211 ABCA9Q8IUA7 1624 aa10.16□□□□□ -0.78
CD44-214ENST00000525211 CDK11AQ9UQ88 783 aaPredicted RBP10.16□□□□□ -0.78
CD44-214ENST00000525211 CD109Q6YHK3 1445 aa10.16□□□□□ -0.78
CD44-214ENST00000525211 MAP3K4Q9Y6R4 1608 aa10.15□□□□□ -0.78
CD44-214ENST00000525211 ZNF644Q9H582 1327 aaPredicted RBP10.15□□□□□ -0.78
CD44-214ENST00000525211 TSPOAP1O95153 1857 aa10.15□□□□□ -0.79
CD44-214ENST00000525211 GPATCH8Q9UKJ3 1502 aaKnown RBP10.14□□□□□ -0.79
CD44-214ENST00000525211 APLP2Q06481 763 aa10.14□□□□□ -0.79
CD44-214ENST00000525211 COL17A1Q9UMD9 1497 aaPredicted RBP10.13□□□□□ -0.79
CD44-214ENST00000525211 U3KPZ7 1027 aaPredicted RBP10.13□□□□□ -0.79
CD44-214ENST00000525211 PLCH2O75038 1416 aa10.12□□□□□ -0.79
CD44-214ENST00000525211 CDC42BPAQ5VT25 1732 aa10.11□□□□□ -0.79
CD44-214ENST00000525211 CDC42BPBQ9Y5S2 1711 aa10.11□□□□□ -0.79
CD44-214ENST00000525211 SUPT6HQ7KZ85 1726 aaKnown RBP10.1□□□□□ -0.79
CD44-214ENST00000525211 ARHGEF12Q9NZN5 1544 aa10.1□□□□□ -0.79
CD44-214ENST00000525211 CCNB3Q8WWL7 1395 aa10.1□□□□□ -0.79
CD44-214ENST00000525211 ZNF777Q9ULD5 760 aaPredicted RBP10.09□□□□□ -0.79
CD44-214ENST00000525211 ATF5Q9Y2D1 282 aaPredicted RBP10.09□□□□□ -0.79
CD44-214ENST00000525211 PREX2Q70Z35 1606 aa10.08□□□□□ -0.8
CD44-214ENST00000525211 ILDR1Q86SU0 546 aaPredicted RBP10.08□□□□□ -0.8
CD44-214ENST00000525211 FANCAO15360 1455 aa10.08□□□□□ -0.8
CD44-214ENST00000525211 SAMD9LQ8IVG5 1584 aa10.08□□□□□ -0.8
CD44-214ENST00000525211 MYOM3Q5VTT5 1437 aa10.07□□□□□ -0.8
CD44-214ENST00000525211 ARHGAP5Q13017 1502 aa10.07□□□□□ -0.8
CD44-214ENST00000525211 MYO5CQ9NQX4 1742 aa10.07□□□□□ -0.8
CD44-214ENST00000525211 HNRNPMP52272 730 aaKnown RBP eCLIP10.07□□□□□ -0.8
CD44-214ENST00000525211 CFDP1Q9UEE9 299 aaPredicted RBP10.07□□□□□ -0.8
CD44-214ENST00000525211 AKNAQ7Z591 1439 aa10.07□□□□□ -0.8
CD44-214ENST00000525211 RAPGEF3O95398 923 aa10.06□□□□□ -0.8
CD44-214ENST00000525211 EFCAB2Q5VUJ9 269 aa10.06□□□□□ -0.8
CD44-214ENST00000525211 FGD6Q6ZV73 1430 aa10.06□□□□□ -0.8
CD44-214ENST00000525211 TRAPPC8Q9Y2L5 1435 aa10.06□□□□□ -0.8
CD44-214ENST00000525211 SAMD1Q6SPF0 538 aaPredicted RBP10.05□□□□□ -0.8
CD44-214ENST00000525211 FRMPD1Q5SYB0 1578 aa10.05□□□□□ -0.8
CD44-214ENST00000525211 ARAP3Q8WWN8 1544 aa10.04□□□□□ -0.8
CD44-214ENST00000525211 AFAP1Q8N556 730 aa10.04□□□□□ -0.8
CD44-214ENST00000525211 SCAPERQ9BY12 1400 aa10.04□□□□□ -0.8
CD44-214ENST00000525211 CAMSAP2Q08AD1 1489 aa10.04□□□□□ -0.8
CD44-214ENST00000525211 MBD5Q9P267 1494 aa10.04□□□□□ -0.8
CD44-214ENST00000525211 ABCC1P33527 1531 aa10.03□□□□□ -0.8
CD44-214ENST00000525211 SYCP2Q9BX26 1530 aa10.03□□□□□ -0.8
CD44-214ENST00000525211 NEO1Q92859 1461 aa10.03□□□□□ -0.8
CD44-214ENST00000525211 PTPRKQ15262 1439 aa10.02□□□□□ -0.81
CD44-214ENST00000525211 PTPN23Q9H3S7 1636 aa10.02□□□□□ -0.81
CD44-214ENST00000525211 ADGRL1O94910 1474 aa10.02□□□□□ -0.81
CD44-214ENST00000525211 TCOF1Q13428 1488 aaKnown RBP10.02□□□□□ -0.81
CD44-214ENST00000525211 TEX14Q8IWB6 1497 aa10.02□□□□□ -0.81
CD44-214ENST00000525211 MIA2Q96PC5 1412 aa10.01□□□□□ -0.81
CD44-214ENST00000525211 FAM50AQ14320 339 aaKnown RBP10.01□□□□□ -0.81
CD44-214ENST00000525211 ITSN2Q9NZM3 1697 aa10.01□□□□□ -0.81
CD44-214ENST00000525211 ABCC5O15440 1437 aa10□□□□□ -0.81
CD44-214ENST00000525211 RRBP1Q9P2E9 1410 aaKnown RBP10□□□□□ -0.81
CD44-214ENST00000525211 POGZQ7Z3K3 1410 aa9.99□□□□□ -0.81
CD44-214ENST00000525211 DENND4BO75064 1496 aaPredicted RBP9.99□□□□□ -0.81
CD44-214ENST00000525211 RICTORQ6R327 1708 aa9.99□□□□□ -0.81
CD44-214ENST00000525211 YEATS2Q9ULM3 1422 aa9.99□□□□□ -0.81
CD44-214ENST00000525211 KIAA1107Q9UPP5 1409 aa9.99□□□□□ -0.81
CD44-214ENST00000525211 KDM6BO15054 1643 aa9.98□□□□□ -0.81
CD44-214ENST00000525211 ITGAEP38570 1179 aa9.97□□□□□ -0.81
CD44-214ENST00000525211 CHIC2Q9UKJ5 165 aa9.97□□□□□ -0.81
CD44-214ENST00000525211 CFAP74Q9C0B2 1584 aa9.97□□□□□ -0.81
CD44-214ENST00000525211 DAPK1P53355 1430 aa9.96□□□□□ -0.82
CD44-214ENST00000525211 KDM5CP41229 1560 aa9.95□□□□□ -0.82
CD44-214ENST00000525211 SIGLEC1Q9BZZ2 1709 aa9.95□□□□□ -0.82
CD44-214ENST00000525211 ARHGEF5Q12774 1597 aa9.94□□□□□ -0.82
CD44-214ENST00000525211 CCDC141Q6ZP82 1450 aa9.94□□□□□ -0.82
CD44-214ENST00000525211 PLEKHH2Q8IVE3 1493 aa9.94□□□□□ -0.82
CD44-214ENST00000525211 KIDINS220Q9ULH0 1771 aa9.93□□□□□ -0.82
CD44-214ENST00000525211 DNMT1P26358 1616 aaKnown RBP9.93□□□□□ -0.82
CD44-214ENST00000525211 ZNF518AQ6AHZ1 1483 aa9.93□□□□□ -0.82
CD44-214ENST00000525211 SPAG9O60271 1321 aaKnown RBP9.93□□□□□ -0.82
CD44-214ENST00000525211 ZMYM4Q5VZL5 1548 aa9.92□□□□□ -0.82
CD44-214ENST00000525211 ABCA6Q8N139 1617 aa9.92□□□□□ -0.82
CD44-214ENST00000525211 INO80Q9ULG1 1556 aaPredicted RBP9.92□□□□□ -0.82
CD44-214ENST00000525211 ZFYVE16Q7Z3T8 1539 aa9.92□□□□□ -0.82
CD44-214ENST00000525211 MLH3Q9UHC1 1453 aa9.91□□□□□ -0.82
CD44-214ENST00000525211 C9orf84Q5VXU9 1444 aa9.91□□□□□ -0.82
CD44-214ENST00000525211 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.91□□□□□ -0.82
CD44-214ENST00000525211 CROCC2H7BZ55 1655 aa9.91□□□□□ -0.82
CD44-214ENST00000525211 RRP7BPQ9NSQ0 103 aa9.91□□□□□ -0.82
CD44-214ENST00000525211 DIP2CQ9Y2E4 1556 aa9.91□□□□□ -0.82
CD44-214ENST00000525211 POTEDQ86YR6 584 aa9.9□□□□□ -0.82
CD44-214ENST00000525211 ATP7AQ04656 1500 aa9.9□□□□□ -0.82
CD44-214ENST00000525211 HECW2Q9P2P5 1572 aa9.89□□□□□ -0.83
CD44-214ENST00000525211 MAST1Q9Y2H9 1570 aa9.89□□□□□ -0.83
CD44-214ENST00000525211 MYT1LQ9UL68 1186 aa9.89□□□□□ -0.83
CD44-214ENST00000525211 ARHGEF40Q8TER5 1519 aa9.88□□□□□ -0.83
CD44-214ENST00000525211 TSPY4P0CV99 314 aa9.88□□□□□ -0.83
CD44-214ENST00000525211 TSPY10P0CW01 314 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms