RNA–Protein interactions for RNA: ENST00000519485.1

CSMD3-209, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 3

Gene CSMD3, Length 452 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-209ENST00000519485 ERBB3P21860 1342 aa10.47□□□□□ -0.73
CSMD3-209ENST00000519485 NLRP6P59044 892 aa10.45□□□□□ -0.74
CSMD3-209ENST00000519485 FBXO22Q8NEZ5 403 aa10.45□□□□□ -0.74
CSMD3-209ENST00000519485 GPR153Q6NV75 609 aa10.44□□□□□ -0.74
CSMD3-209ENST00000519485 BCL11BQ9C0K0 894 aaPredicted RBP10.41□□□□□ -0.74
CSMD3-209ENST00000519485 VARS2Q5ST30 1063 aaKnown RBP10.4□□□□□ -0.74
CSMD3-209ENST00000519485 ZNF687Q8N1G0 1237 aa10.4□□□□□ -0.74
CSMD3-209ENST00000519485 MFRPQ9BY79 579 aa10.38□□□□□ -0.75
CSMD3-209ENST00000519485 STK24Q9Y6E0 443 aa10.36□□□□□ -0.75
CSMD3-209ENST00000519485 KIF3CO14782 793 aa10.35□□□□□ -0.75
CSMD3-209ENST00000519485 STK25O00506 426 aa10.32□□□□□ -0.76
CSMD3-209ENST00000519485 ECM2O94769 699 aaPredicted RBP10.32□□□□□ -0.76
CSMD3-209ENST00000519485 PTGER2P43116 358 aa10.31□□□□□ -0.76
CSMD3-209ENST00000519485 ARSIQ5FYB1 569 aa10.31□□□□□ -0.76
CSMD3-209ENST00000519485 RNF166Q96A37 237 aaPredicted RBP10.29□□□□□ -0.76
CSMD3-209ENST00000519485 ZNF316A6NFI3 1004 aaPredicted RBP10.28□□□□□ -0.76
CSMD3-209ENST00000519485 SLC34A2O95436 690 aa10.28□□□□□ -0.76
CSMD3-209ENST00000519485 PKD2Q13563 968 aa10.28□□□□□ -0.76
CSMD3-209ENST00000519485 C2orf72A6NCS6 295 aa10.27□□□□□ -0.77
CSMD3-209ENST00000519485 MYT1LQ9UL68 1186 aa10.27□□□□□ -0.77
CSMD3-209ENST00000519485 RGL2O15211 777 aa10.24□□□□□ -0.77
CSMD3-209ENST00000519485 KHSRPQ92945 711 aaKnown RBP eCLIP10.23□□□□□ -0.77
CSMD3-209ENST00000519485 PBX2P40425 430 aa10.21□□□□□ -0.77
CSMD3-209ENST00000519485 LSM11P83369 360 aaKnown RBP eCLIP10.19□□□□□ -0.78
CSMD3-209ENST00000519485 TMC2Q8TDI7 906 aa10.19□□□□□ -0.78
CSMD3-209ENST00000519485 PCDHGA4Q9Y5G9 962 aa10.19□□□□□ -0.78
CSMD3-209ENST00000519485 NUDT7P0C024 238 aa10.17□□□□□ -0.78
CSMD3-209ENST00000519485 ANKRD13DQ6ZTN6 518 aa10.15□□□□□ -0.78
CSMD3-209ENST00000519485 PPP1R37O75864 691 aa10.14□□□□□ -0.79
CSMD3-209ENST00000519485 LHX6Q9UPM6 363 aa10.14□□□□□ -0.79
CSMD3-209ENST00000519485 KDM4FA0A1W2PPD8 638 aa10.13□□□□□ -0.79
CSMD3-209ENST00000519485 PSDA5PKW4 1024 aaPredicted RBP10.13□□□□□ -0.79
CSMD3-209ENST00000519485 POTEEQ6S8J3 1075 aa10.12□□□□□ -0.79
CSMD3-209ENST00000519485 PTCD2Q8WV60 388 aaKnown RBP10.12□□□□□ -0.79
CSMD3-209ENST00000519485 HS6ST3Q8IZP7 471 aa10.11□□□□□ -0.79
CSMD3-209ENST00000519485 FOXK1P85037 733 aa10.1□□□□□ -0.79
CSMD3-209ENST00000519485 GPHNQ9NQX3 736 aaPredicted RBP10.07□□□□□ -0.8
CSMD3-209ENST00000519485 DNAJC5Q9H3Z4 198 aa10.06□□□□□ -0.8
CSMD3-209ENST00000519485 ARHGAP33O14559 1287 aa10.05□□□□□ -0.8
CSMD3-209ENST00000519485 AXIN2Q9Y2T1 843 aa10.03□□□□□ -0.8
CSMD3-209ENST00000519485 TK2O00142 265 aa10.02□□□□□ -0.81
CSMD3-209ENST00000519485 ADGRD1Q6QNK2 874 aa10.02□□□□□ -0.81
CSMD3-209ENST00000519485 PLPP6Q8IY26 295 aa10.02□□□□□ -0.81
CSMD3-209ENST00000519485 TBC1D12O60347 775 aa9.99□□□□□ -0.81
CSMD3-209ENST00000519485 DSG2Q14126 1118 aa9.99□□□□□ -0.81
CSMD3-209ENST00000519485 RYDENQ9NUL5 291 aaKnown RBP9.98□□□□□ -0.81
CSMD3-209ENST00000519485 HCSTQ9UBK5 93 aa9.98□□□□□ -0.81
CSMD3-209ENST00000519485 HRO43593 1189 aa9.97□□□□□ -0.81
CSMD3-209ENST00000519485 PPP4R3BQ5MIZ7 849 aa9.97□□□□□ -0.81
CSMD3-209ENST00000519485 CHGAP10645 457 aaKnown RBP9.94□□□□□ -0.82
CSMD3-209ENST00000519485 NKX1-1Q15270 411 aaPredicted RBP9.93□□□□□ -0.82
CSMD3-209ENST00000519485 DMRTA1Q5VZB9 504 aa9.93□□□□□ -0.82
CSMD3-209ENST00000519485 OXER1Q8TDS5 423 aa9.93□□□□□ -0.82
CSMD3-209ENST00000519485 PSEN2P49810 448 aa9.92□□□□□ -0.82
CSMD3-209ENST00000519485 CRISPLD2Q9H0B8 497 aa9.92□□□□□ -0.82
CSMD3-209ENST00000519485 PLA2G2EQ9NZK7 142 aa9.9□□□□□ -0.82
CSMD3-209ENST00000519485 KCNH8Q96L42 1107 aa9.88□□□□□ -0.83
CSMD3-209ENST00000519485 SLC4A5Q9BY07 1137 aa9.87□□□□□ -0.83
CSMD3-209ENST00000519485 BCL2L12Q9HB09 334 aa9.86□□□□□ -0.83
CSMD3-209ENST00000519485 PPP1R15BQ5SWA1 713 aa9.85□□□□□ -0.83
CSMD3-209ENST00000519485 KCNK17Q96T54 332 aa9.85□□□□□ -0.83
CSMD3-209ENST00000519485 ANO8Q9HCE9 1232 aaPredicted RBP9.84□□□□□ -0.83
CSMD3-209ENST00000519485 VPS9D1Q9Y2B5 631 aa9.84□□□□□ -0.83
CSMD3-209ENST00000519485 NCKAP5LQ9HCH0 1330 aa9.83□□□□□ -0.84
CSMD3-209ENST00000519485 PDE4AP27815 886 aa9.83□□□□□ -0.84
CSMD3-209ENST00000519485 FOSBP53539 338 aa9.82□□□□□ -0.84
CSMD3-209ENST00000519485 ZNF454Q8N9F8 522 aa9.81□□□□□ -0.84
CSMD3-209ENST00000519485 UPF1Q92900 1129 aaKnown RBP eCLIP9.8□□□□□ -0.84
CSMD3-209ENST00000519485 STAC3Q96MF2 364 aa9.8□□□□□ -0.84
CSMD3-209ENST00000519485 BHMG1C9JSJ3 638 aaPredicted RBP9.79□□□□□ -0.84
CSMD3-209ENST00000519485 KCTD12Q96CX2 325 aaKnown RBP9.79□□□□□ -0.84
CSMD3-209ENST00000519485 JPH4Q96JJ6 628 aa9.79□□□□□ -0.84
CSMD3-209ENST00000519485 GTPBP6O43824 516 aaPredicted RBP9.78□□□□□ -0.84
CSMD3-209ENST00000519485 PTPREP23469 700 aa9.77□□□□□ -0.85
CSMD3-209ENST00000519485 MFSD10Q14728 455 aa9.77□□□□□ -0.85
CSMD3-209ENST00000519485 IFFO2Q5TF58 517 aa9.77□□□□□ -0.85
CSMD3-209ENST00000519485 EVI5O60447 810 aa9.75□□□□□ -0.85
CSMD3-209ENST00000519485 ZBED2Q9BTP6 218 aa9.75□□□□□ -0.85
CSMD3-209ENST00000519485 DDX27Q96GQ7 796 aaKnown RBP9.74□□□□□ -0.85
CSMD3-209ENST00000519485 ZDHHC16Q969W1 377 aa9.73□□□□□ -0.85
CSMD3-209ENST00000519485 THSD4Q6ZMP0 1018 aa9.71□□□□□ -0.86
CSMD3-209ENST00000519485 LARP6Q9BRS8 491 aaKnown RBP9.71□□□□□ -0.86
CSMD3-209ENST00000519485 RGS20O76081 388 aa9.7□□□□□ -0.86
CSMD3-209ENST00000519485 ADAM33Q9BZ11 813 aa9.69□□□□□ -0.86
CSMD3-209ENST00000519485 MRPL50Q8N5N7 158 aaKnown RBP9.68□□□□□ -0.86
CSMD3-209ENST00000519485 NBPF3Q9H094 633 aa9.68□□□□□ -0.86
CSMD3-209ENST00000519485 MAP3K9P80192 1104 aa9.67□□□□□ -0.86
CSMD3-209ENST00000519485 PPP1R3GB7ZBB8 358 aa9.66□□□□□ -0.86
CSMD3-209ENST00000519485 PTPN5P54829 565 aa9.66□□□□□ -0.86
CSMD3-209ENST00000519485 EMILIN3Q9NT22 766 aa9.66□□□□□ -0.86
CSMD3-209ENST00000519485 WNT2BQ93097 391 aa9.65□□□□□ -0.86
CSMD3-209ENST00000519485 GOLGA8CPA6NN73 597 aa9.64□□□□□ -0.87
CSMD3-209ENST00000519485 FBXW7Q969H0 707 aa9.64□□□□□ -0.87
CSMD3-209ENST00000519485 RABGEF1Q9UJ41 708 aa9.64□□□□□ -0.87
CSMD3-209ENST00000519485 PCDHGA10Q9Y5H3 936 aa9.64□□□□□ -0.87
CSMD3-209ENST00000519485 PHF14O94880 888 aa9.62□□□□□ -0.87
CSMD3-209ENST00000519485 CAMK2BQ13554 666 aa9.61□□□□□ -0.87
CSMD3-209ENST00000519485 TYW1BQ6NUM6 668 aa9.61□□□□□ -0.87
CSMD3-209ENST00000519485 ONECUT3O60422 494 aaPredicted RBP9.6□□□□□ -0.87
CSMD3-209ENST00000519485 A0A0G2JS52 829 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms