RNA–Protein interactions for RNA: ENST00000518569.1

VPS13B-207, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 3

Gene VPS13B, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-207ENST00000518569 L3MBTL3Q96JM7 780 aaPredicted RBP9.21□□□□□ -0.94
VPS13B-207ENST00000518569 G3V3G9 751 aa9.2□□□□□ -0.94
VPS13B-207ENST00000518569 PCDH10Q9P2E7 1040 aa9.18□□□□□ -0.94
VPS13B-207ENST00000518569 MS4A4AQ96JQ5 239 aa9.17□□□□□ -0.94
VPS13B-207ENST00000518569 SNPHO15079 494 aa9.16□□□□□ -0.94
VPS13B-207ENST00000518569 ST18O60284 1047 aa9.16□□□□□ -0.94
VPS13B-207ENST00000518569 PPP1R37O75864 691 aa9.14□□□□□ -0.95
VPS13B-207ENST00000518569 KDM2AQ9Y2K7 1162 aa9.14□□□□□ -0.95
VPS13B-207ENST00000518569 DPY19L2Q6NUT2 758 aa9.13□□□□□ -0.95
VPS13B-207ENST00000518569 BOLA1Q9Y3E2 137 aa9.11□□□□□ -0.95
VPS13B-207ENST00000518569 CDAN1Q8IWY9 1227 aa9.1□□□□□ -0.95
VPS13B-207ENST00000518569 MARVELD3Q96A59 401 aa9.07□□□□□ -0.96
VPS13B-207ENST00000518569 TMEM121BQ9BXQ6 578 aaPredicted RBP9.07□□□□□ -0.96
VPS13B-207ENST00000518569 CADPS2Q86UW7 1296 aa9.06□□□□□ -0.96
VPS13B-207ENST00000518569 EMP3P54852 163 aa9.03□□□□□ -0.96
VPS13B-207ENST00000518569 PDE4AP27815 886 aa9.02□□□□□ -0.97
VPS13B-207ENST00000518569 MICALL2Q8IY33 904 aa9.01□□□□□ -0.97
VPS13B-207ENST00000518569 WDR70Q9NW82 654 aa9□□□□□ -0.97
VPS13B-207ENST00000518569 CRISPLD2Q9H0B8 497 aa8.99□□□□□ -0.97
VPS13B-207ENST00000518569 ZNF710Q8N1W2 664 aa8.98□□□□□ -0.97
VPS13B-207ENST00000518569 NCKAP5LQ9HCH0 1330 aa8.98□□□□□ -0.97
VPS13B-207ENST00000518569 MFSD10Q14728 455 aa8.97□□□□□ -0.97
VPS13B-207ENST00000518569 FAM205CA6NFA0 338 aa8.95□□□□□ -0.98
VPS13B-207ENST00000518569 GPHNQ9NQX3 736 aaPredicted RBP8.95□□□□□ -0.98
VPS13B-207ENST00000518569 DOK7Q18PE1 504 aa8.94□□□□□ -0.98
VPS13B-207ENST00000518569 P3H3Q8IVL6 736 aa8.94□□□□□ -0.98
VPS13B-207ENST00000518569 BCANQ96GW7 911 aa8.94□□□□□ -0.98
VPS13B-207ENST00000518569 LARP6Q9BRS8 491 aaKnown RBP8.94□□□□□ -0.98
VPS13B-207ENST00000518569 HS3ST6Q96QI5 342 aa8.93□□□□□ -0.98
VPS13B-207ENST00000518569 RIMBP2O15034 1052 aa8.92□□□□□ -0.98
VPS13B-207ENST00000518569 DDX27Q96GQ7 796 aaKnown RBP8.92□□□□□ -0.98
VPS13B-207ENST00000518569 HOXB3P14651 431 aaPredicted RBP8.91□□□□□ -0.98
VPS13B-207ENST00000518569 TMC2Q8TDI7 906 aa8.91□□□□□ -0.98
VPS13B-207ENST00000518569 KIF3CO14782 793 aa8.9□□□□□ -0.98
VPS13B-207ENST00000518569 E2F4Q16254 413 aa8.9□□□□□ -0.98
VPS13B-207ENST00000518569 FOXK1P85037 733 aa8.88□□□□□ -0.99
VPS13B-207ENST00000518569 PPP1R15BQ5SWA1 713 aa8.88□□□□□ -0.99
VPS13B-207ENST00000518569 TMEM92Q6UXU6 159 aa8.88□□□□□ -0.99
VPS13B-207ENST00000518569 ERBB3P21860 1342 aa8.87□□□□□ -0.99
VPS13B-207ENST00000518569 CAMK2BQ13554 666 aa8.87□□□□□ -0.99
VPS13B-207ENST00000518569 KCNV2Q8TDN2 545 aa8.87□□□□□ -0.99
VPS13B-207ENST00000518569 C2orf72A6NCS6 295 aa8.86□□□□□ -0.99
VPS13B-207ENST00000518569 HOXB1P14653 301 aaPredicted RBP8.86□□□□□ -0.99
VPS13B-207ENST00000518569 POTEB3A0JP26 581 aa8.85□□□□□ -0.99
VPS13B-207ENST00000518569 DSG2Q14126 1118 aa8.85□□□□□ -0.99
VPS13B-207ENST00000518569 POTEBQ6S5H4 581 aa8.85□□□□□ -0.99
VPS13B-207ENST00000518569 SPNS2Q8IVW8 549 aa8.85□□□□□ -0.99
VPS13B-207ENST00000518569 ARHGEF1Q92888 912 aaKnown RBP8.85□□□□□ -0.99
VPS13B-207ENST00000518569 ARIH1Q9Y4X5 557 aaPredicted RBP8.85□□□□□ -0.99
VPS13B-207ENST00000518569 NBR1Q14596 966 aa8.84□□□□□ -0.99
VPS13B-207ENST00000518569 MMRN1Q13201 1228 aa8.82□□□□□ -1
VPS13B-207ENST00000518569 PLPP6Q8IY26 295 aa8.82□□□□□ -1
VPS13B-207ENST00000518569 VARS2Q5ST30 1063 aaKnown RBP8.8□□□□□ -1
VPS13B-207ENST00000518569 KRTAP3-3Q9BYR6 98 aa8.8□□□□□ -1
VPS13B-207ENST00000518569 KRTAP3-2Q9BYR7 98 aa8.8□□□□□ -1
VPS13B-207ENST00000518569 ZSWIM6Q9HCJ5 1215 aa8.8□□□□□ -1
VPS13B-207ENST00000518569 ARSIQ5FYB1 569 aa8.76□□□□□ -1.01
VPS13B-207ENST00000518569 EMILIN3Q9NT22 766 aa8.76□□□□□ -1.01
VPS13B-207ENST00000518569 SLC34A2O95436 690 aa8.74□□□□□ -1.01
VPS13B-207ENST00000518569 GPR153Q6NV75 609 aa8.74□□□□□ -1.01
VPS13B-207ENST00000518569 OXER1Q8TDS5 423 aa8.73□□□□□ -1.01
VPS13B-207ENST00000518569 KHSRPQ92945 711 aaKnown RBP eCLIP8.73□□□□□ -1.016e-8■■□□□ 14
VPS13B-207ENST00000518569 SPDYE16A6NNV3 312 aaPredicted RBP8.72□□□□□ -1.01
VPS13B-207ENST00000518569 DPYSL4O14531 572 aa8.71□□□□□ -1.02
VPS13B-207ENST00000518569 PTCD2Q8WV60 388 aaKnown RBP8.71□□□□□ -1.02
VPS13B-207ENST00000518569 PDIA6Q15084 440 aa8.7□□□□□ -1.02
VPS13B-207ENST00000518569 TESPA1A2RU30 521 aaPredicted RBP8.69□□□□□ -1.02
VPS13B-207ENST00000518569 TBC1D12O60347 775 aa8.69□□□□□ -1.02
VPS13B-207ENST00000518569 MAP3K9P80192 1104 aa8.69□□□□□ -1.02
VPS13B-207ENST00000518569 ZNF687Q8N1G0 1237 aa8.69□□□□□ -1.02
VPS13B-207ENST00000518569 ZNF316A6NFI3 1004 aaPredicted RBP8.68□□□□□ -1.02
VPS13B-207ENST00000518569 SEMA3EO15041 775 aa8.68□□□□□ -1.02
VPS13B-207ENST00000518569 NUDT7P0C024 238 aa8.68□□□□□ -1.02
VPS13B-207ENST00000518569 TULP1O00294 542 aaPredicted RBP8.67□□□□□ -1.02
VPS13B-207ENST00000518569 SMYD5Q6GMV2 418 aa8.66□□□□□ -1.02
VPS13B-207ENST00000518569 UPF1Q92900 1129 aaKnown RBP eCLIP8.66□□□□□ -1.02
VPS13B-207ENST00000518569 PCDHGA4Q9Y5G9 962 aa8.65□□□□□ -1.02
VPS13B-207ENST00000518569 ANKRD13DQ6ZTN6 518 aa8.64□□□□□ -1.03
VPS13B-207ENST00000518569 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.64□□□□□ -1.03
VPS13B-207ENST00000518569 RNF166Q96A37 237 aaPredicted RBP8.64□□□□□ -1.03
VPS13B-207ENST00000518569 PTGER2P43116 358 aa8.63□□□□□ -1.03
VPS13B-207ENST00000518569 EVI5O60447 810 aa8.62□□□□□ -1.03
VPS13B-207ENST00000518569 ANO8Q9HCE9 1232 aaPredicted RBP8.62□□□□□ -1.03
VPS13B-207ENST00000518569 MYT1LQ9UL68 1186 aa8.61□□□□□ -1.03
VPS13B-207ENST00000518569 LHX6Q9UPM6 363 aa8.61□□□□□ -1.03
VPS13B-207ENST00000518569 LMOD2Q6P5Q4 547 aa8.6□□□□□ -1.03
VPS13B-207ENST00000518569 MLLT3P42568 568 aaPredicted RBP8.59□□□□□ -1.03
VPS13B-207ENST00000518569 KDM4FA0A1W2PPD8 638 aa8.58□□□□□ -1.04
VPS13B-207ENST00000518569 LSM11P83369 360 aaKnown RBP eCLIP8.57□□□□□ -1.04
VPS13B-207ENST00000518569 AXIN2Q9Y2T1 843 aa8.56□□□□□ -1.04
VPS13B-207ENST00000518569 PBX2P40425 430 aa8.55□□□□□ -1.04
VPS13B-207ENST00000518569 TPRNQ4KMQ1 711 aa8.55□□□□□ -1.04
VPS13B-207ENST00000518569 PSDA5PKW4 1024 aaPredicted RBP8.53□□□□□ -1.04
VPS13B-207ENST00000518569 GRXCR2A6NFK2 248 aa8.53□□□□□ -1.04
VPS13B-207ENST00000518569 PHF14O94880 888 aa8.53□□□□□ -1.04
VPS13B-207ENST00000518569 OSBPP22059 807 aa8.53□□□□□ -1.04
VPS13B-207ENST00000518569 EPAS1Q99814 870 aa8.53□□□□□ -1.04
VPS13B-207ENST00000518569 DDX12PQ92771 950 aa8.52□□□□□ -1.05
VPS13B-207ENST00000518569 JPH4Q96JJ6 628 aa8.51□□□□□ -1.05
VPS13B-207ENST00000518569 RBM26Q5T8P6 1007 aaKnown RBP8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms