RNA–Protein interactions for RNA: ENST00000518538.5

VEGFA-217, Transcript of vascular endothelial growth factor A, humanhuman

TSL 2

Gene VEGFA, Length 535 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-217ENST00000518538 DENND4BO75064 1496 aaPredicted RBP34.65■■■■□ 3.14
VEGFA-217ENST00000518538 ADGRL1O94910 1474 aa34.65■■■■□ 3.14
VEGFA-217ENST00000518538 LRRC9Q6ZRR7 1453 aa34.65■■■■□ 3.14
VEGFA-217ENST00000518538 GPATCH8Q9UKJ3 1502 aaKnown RBP34.64■■■■□ 3.14
VEGFA-217ENST00000518538 RAPGEF3O95398 923 aa34.63■■■■□ 3.13
VEGFA-217ENST00000518538 FRMPD1Q5SYB0 1578 aa34.62■■■■□ 3.13
VEGFA-217ENST00000518538 CCNB3Q8WWL7 1395 aa34.62■■■■□ 3.13
VEGFA-217ENST00000518538 APLP2Q06481 763 aa34.6■■■■□ 3.13
VEGFA-217ENST00000518538 SUPT6HQ7KZ85 1726 aaKnown RBP34.6■■■■□ 3.13
VEGFA-217ENST00000518538 SCAPERQ9BY12 1400 aa34.59■■■■□ 3.13
VEGFA-217ENST00000518538 RICTORQ6R327 1708 aa34.57■■■■□ 3.12
VEGFA-217ENST00000518538 NCOA2Q15596 1464 aa34.57■■■■□ 3.12
VEGFA-217ENST00000518538 KANK4Q5T7N3 995 aaPredicted RBP34.56■■■■□ 3.12
VEGFA-217ENST00000518538 POGZQ7Z3K3 1410 aa34.54■■■■□ 3.12
VEGFA-217ENST00000518538 ITSN2Q9NZM3 1697 aa34.51■■■■□ 3.12
VEGFA-217ENST00000518538 CFDP1Q9UEE9 299 aaPredicted RBP34.51■■■■□ 3.12
VEGFA-217ENST00000518538 ABCC1P33527 1531 aa34.5■■■■□ 3.11
VEGFA-217ENST00000518538 ZMYM4Q5VZL5 1548 aa34.49■■■■□ 3.11
VEGFA-217ENST00000518538 SAMD9LQ8IVG5 1584 aa34.47■■■■□ 3.11
VEGFA-217ENST00000518538 ZNF777Q9ULD5 760 aaPredicted RBP34.45■■■■□ 3.11
VEGFA-217ENST00000518538 ZNF518AQ6AHZ1 1483 aa34.45■■■■□ 3.1
VEGFA-217ENST00000518538 ARHGEF12Q9NZN5 1544 aa34.44■■■■□ 3.1
VEGFA-217ENST00000518538 PLEKHH2Q8IVE3 1493 aa34.41■■■■□ 3.1
VEGFA-217ENST00000518538 MAGI2Q86UL8 1455 aa34.4■■■■□ 3.1
VEGFA-217ENST00000518538 KDM5CP41229 1560 aa34.4■■■■□ 3.1
VEGFA-217ENST00000518538 KIAA1107Q9UPP5 1409 aa34.39■■■■□ 3.1
VEGFA-217ENST00000518538 ARHGEF40Q8TER5 1519 aa34.39■■■■□ 3.1
VEGFA-217ENST00000518538 TRAPPC8Q9Y2L5 1435 aa34.38■■■■□ 3.09
VEGFA-217ENST00000518538 SYCP2Q9BX26 1530 aa34.37■■■■□ 3.09
VEGFA-217ENST00000518538 AFAP1Q8N556 730 aa34.37■■■■□ 3.09
VEGFA-217ENST00000518538 ZFYVE16Q7Z3T8 1539 aa34.35■■■■□ 3.09
VEGFA-217ENST00000518538 YEATS2Q9ULM3 1422 aa34.32■■■■□ 3.08
VEGFA-217ENST00000518538 ZNF644Q9H582 1327 aaPredicted RBP34.31■■■■□ 3.08
VEGFA-217ENST00000518538 MYOM3Q5VTT5 1437 aa34.3■■■■□ 3.08
VEGFA-217ENST00000518538 HNRNPMP52272 730 aaKnown RBP eCLIP34.3■■■■□ 3.08
VEGFA-217ENST00000518538 HECW2Q9P2P5 1572 aa34.29■■■■□ 3.08
VEGFA-217ENST00000518538 MLH3Q9UHC1 1453 aa34.27■■■■□ 3.08
VEGFA-217ENST00000518538 CAMSAP2Q08AD1 1489 aa34.27■■■■□ 3.08
VEGFA-217ENST00000518538 MIA2Q96PC5 1412 aa34.26■■■■□ 3.07
VEGFA-217ENST00000518538 MBD5Q9P267 1494 aa34.24■■■■□ 3.07
VEGFA-217ENST00000518538 MYT1LQ9UL68 1186 aa34.21■■■■□ 3.07
VEGFA-217ENST00000518538 KDM4FA0A1W2PPD8 638 aa34.2■■■■□ 3.07
VEGFA-217ENST00000518538 ATP10AO60312 1499 aa34.2■■■■□ 3.06
VEGFA-217ENST00000518538 SPAG9O60271 1321 aaKnown RBP34.17■■■■□ 3.06
VEGFA-217ENST00000518538 C9orf84Q5VXU9 1444 aa34.17■■■■□ 3.06
VEGFA-217ENST00000518538 KIDINS220Q9ULH0 1771 aa34.16■■■■□ 3.06
VEGFA-217ENST00000518538 DIP2CQ9Y2E4 1556 aa34.16■■■■□ 3.06
VEGFA-217ENST00000518538 ABCA6Q8N139 1617 aa34.15■■■■□ 3.06
VEGFA-217ENST00000518538 RSPH4AQ5TD94 716 aa34.14■■■■□ 3.06
VEGFA-217ENST00000518538 CCDC141Q6ZP82 1450 aa34.14■■■■□ 3.06
VEGFA-217ENST00000518538 ARID4BQ4LE39 1312 aaPredicted RBP34.12■■■■□ 3.05
VEGFA-217ENST00000518538 ARHGEF5Q12774 1597 aa34.12■■■■□ 3.05
VEGFA-217ENST00000518538 INO80Q9ULG1 1556 aaPredicted RBP34.12■■■■□ 3.05
VEGFA-217ENST00000518538 ATP7AQ04656 1500 aa34.12■■■■□ 3.05
VEGFA-217ENST00000518538 FGD6Q6ZV73 1430 aa34.12■■■■□ 3.05
VEGFA-217ENST00000518538 SIGLEC1Q9BZZ2 1709 aa34.1■■■■□ 3.05
VEGFA-217ENST00000518538 REREQ9P2R6 1566 aa34.1■■■■□ 3.05
VEGFA-217ENST00000518538 PTPN23Q9H3S7 1636 aa34.08■■■■□ 3.05
VEGFA-217ENST00000518538 BCORL1Q5H9F3 1711 aa34.06■■■■□ 3.04
VEGFA-217ENST00000518538 RTEL1-TNFRSF6BF6WH68 1400 aa34.05■■■■□ 3.04
VEGFA-217ENST00000518538 AEBP2Q6ZN18 517 aaPredicted RBP34.05■■■■□ 3.04
VEGFA-217ENST00000518538 TCOF1Q13428 1488 aaKnown RBP34.05■■■■□ 3.04
VEGFA-217ENST00000518538 ADAMTSL3P82987 1691 aa34.01■■■■□ 3.04
VEGFA-217ENST00000518538 PPARGC1BQ86YN6 1023 aaKnown RBP33.99■■■■□ 3.03
VEGFA-217ENST00000518538 TSPY4P0CV99 314 aa33.98■■■■□ 3.03
VEGFA-217ENST00000518538 TSPY10P0CW01 314 aa33.98■■■■□ 3.03
VEGFA-217ENST00000518538 AGLP35573 1532 aa33.98■■■■□ 3.03
VEGFA-217ENST00000518538 MAST1Q9Y2H9 1570 aa33.94■■■■□ 3.02
VEGFA-217ENST00000518538 A2MP01023 1474 aa33.94■■■■□ 3.02
VEGFA-217ENST00000518538 ADGBQ8N7X0 1667 aa33.93■■■■□ 3.02
VEGFA-217ENST00000518538 PLXNC1O60486 1568 aa33.92■■■■□ 3.02
VEGFA-217ENST00000518538 MLECQ14165 292 aa33.91■■■■□ 3.02
VEGFA-217ENST00000518538 DNMT1P26358 1616 aaKnown RBP33.9■■■■□ 3.02
VEGFA-217ENST00000518538 MADDQ8WXG6 1647 aa33.9■■■■□ 3.02
VEGFA-217ENST00000518538 ABCC5O15440 1437 aa33.9■■■■□ 3.02
VEGFA-217ENST00000518538 SHANK2Q9UPX8 1470 aa33.88■■■■□ 3.01
VEGFA-217ENST00000518538 DAPK1P53355 1430 aa33.88■■■■□ 3.01
VEGFA-217ENST00000518538 CROCC2H7BZ55 1655 aa33.87■■■■□ 3.01
VEGFA-217ENST00000518538 FAM50AQ14320 339 aaKnown RBP33.85■■■■□ 3.01
VEGFA-217ENST00000518538 DHX29Q7Z478 1369 aaKnown RBP33.84■■■■□ 3.01
VEGFA-217ENST00000518538 PTPRMP28827 1452 aa33.82■■■■□ 3
VEGFA-217ENST00000518538 FER1L4A9Z1Z3 1794 aa33.8■■■■□ 3
VEGFA-217ENST00000518538 RIMS1Q86UR5 1692 aaKnown RBP33.8■■■■□ 3
VEGFA-217ENST00000518538 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP33.74■■■□□ 2.994e-7■■■□□ 14.6
VEGFA-217ENST00000518538 RRBP1Q9P2E9 1410 aaKnown RBP33.7■■■□□ 2.99
VEGFA-217ENST00000518538 KIF15Q9NS87 1388 aa33.7■■■□□ 2.98
VEGFA-217ENST00000518538 DUOX2Q9NRD8 1548 aa33.69■■■□□ 2.98
VEGFA-217ENST00000518538 ANKRD30AQ9BXX3 1397 aa33.69■■■□□ 2.98
VEGFA-217ENST00000518538 CHIC2Q9UKJ5 165 aa33.68■■■□□ 2.98
VEGFA-217ENST00000518538 KIF3BO15066 747 aa33.67■■■□□ 2.98
VEGFA-217ENST00000518538 ADGRL2O95490 1459 aa33.67■■■□□ 2.98
VEGFA-217ENST00000518538 GGT6Q6P531 493 aa33.66■■■□□ 2.98
VEGFA-217ENST00000518538 ESF1Q9H501 851 aaKnown RBP33.66■■■□□ 2.98
VEGFA-217ENST00000518538 CNTLNQ9NXG0 1405 aa33.66■■■□□ 2.98
VEGFA-217ENST00000518538 RRP7BPQ9NSQ0 103 aa33.65■■■□□ 2.98
VEGFA-217ENST00000518538 NCOA1Q15788 1441 aa33.64■■■□□ 2.98
VEGFA-217ENST00000518538 EIF2AK4Q9P2K8 1649 aaKnown RBP33.64■■■□□ 2.98
VEGFA-217ENST00000518538 PPP6R1Q9UPN7 881 aa33.63■■■□□ 2.97
VEGFA-217ENST00000518538 PTPRKQ15262 1439 aa33.62■■■□□ 2.97
VEGFA-217ENST00000518538 ERBINQ96RT1 1412 aa33.61■■■□□ 2.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms