RNA–Protein interactions for RNA: ENST00000515597.1

LINC01088-211, Transcript of long intergenic non-protein coding RNA 1088, humanhuman

TSL 1 (best)

Gene LINC01088, Length 664 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01088-211ENST00000515597 POTEBQ6S5H4 581 aa12.5□□□□□ -0.41
LINC01088-211ENST00000515597 HS3ST6Q96QI5 342 aa12.49□□□□□ -0.41
LINC01088-211ENST00000515597 HOXB1P14653 301 aaPredicted RBP12.46□□□□□ -0.41
LINC01088-211ENST00000515597 RIMBP2O15034 1052 aa12.44□□□□□ -0.42
LINC01088-211ENST00000515597 HS6ST3Q8IZP7 471 aa12.44□□□□□ -0.42
LINC01088-211ENST00000515597 PPP1R37O75864 691 aa12.43□□□□□ -0.42
LINC01088-211ENST00000515597 CHGAP10645 457 aaKnown RBP12.41□□□□□ -0.42
LINC01088-211ENST00000515597 C2orf72A6NCS6 295 aa12.39□□□□□ -0.43
LINC01088-211ENST00000515597 ERBB3P21860 1342 aa12.37□□□□□ -0.43
LINC01088-211ENST00000515597 KIF3CO14782 793 aa12.37□□□□□ -0.43
LINC01088-211ENST00000515597 KRTAP3-3Q9BYR6 98 aa12.37□□□□□ -0.43
LINC01088-211ENST00000515597 KRTAP3-2Q9BYR7 98 aa12.37□□□□□ -0.43
LINC01088-211ENST00000515597 GPR153Q6NV75 609 aa12.36□□□□□ -0.43
LINC01088-211ENST00000515597 ZSWIM6Q9HCJ5 1215 aa12.36□□□□□ -0.43
LINC01088-211ENST00000515597 SPNS2Q8IVW8 549 aa12.35□□□□□ -0.43
LINC01088-211ENST00000515597 ARSIQ5FYB1 569 aa12.33□□□□□ -0.44
LINC01088-211ENST00000515597 VARS2Q5ST30 1063 aaKnown RBP12.33□□□□□ -0.44
LINC01088-211ENST00000515597 KHSRPQ92945 711 aaKnown RBP eCLIP12.33□□□□□ -0.447e-7■■□□□ 12.3
LINC01088-211ENST00000515597 NKX1-1Q15270 411 aaPredicted RBP12.31□□□□□ -0.44
LINC01088-211ENST00000515597 TMC2Q8TDI7 906 aa12.31□□□□□ -0.44
LINC01088-211ENST00000515597 MMRN1Q13201 1228 aa12.29□□□□□ -0.44
LINC01088-211ENST00000515597 DNAJC5Q9H3Z4 198 aa12.24□□□□□ -0.45
LINC01088-211ENST00000515597 NUDT7P0C024 238 aa12.22□□□□□ -0.45
LINC01088-211ENST00000515597 DCAF8L2P0C7V8 631 aa12.22□□□□□ -0.45
LINC01088-211ENST00000515597 ZNF316A6NFI3 1004 aaPredicted RBP12.2□□□□□ -0.46
LINC01088-211ENST00000515597 PCDHGA4Q9Y5G9 962 aa12.2□□□□□ -0.46
LINC01088-211ENST00000515597 ZNF687Q8N1G0 1237 aa12.19□□□□□ -0.46
LINC01088-211ENST00000515597 SLC34A2O95436 690 aa12.18□□□□□ -0.46
LINC01088-211ENST00000515597 PLPP6Q8IY26 295 aa12.16□□□□□ -0.46
LINC01088-211ENST00000515597 FOXK1P85037 733 aa12.15□□□□□ -0.46
LINC01088-211ENST00000515597 DSG2Q14126 1118 aa12.15□□□□□ -0.46
LINC01088-211ENST00000515597 GPHNQ9NQX3 736 aaPredicted RBP12.15□□□□□ -0.46
LINC01088-211ENST00000515597 RYDENQ9NUL5 291 aaKnown RBP12.14□□□□□ -0.47
LINC01088-211ENST00000515597 LHX6Q9UPM6 363 aa12.14□□□□□ -0.47
LINC01088-211ENST00000515597 GTPBP6O43824 516 aaPredicted RBP12.11□□□□□ -0.47
LINC01088-211ENST00000515597 PTCD2Q8WV60 388 aaKnown RBP12.08□□□□□ -0.48
LINC01088-211ENST00000515597 CRISPLD2Q9H0B8 497 aa12.07□□□□□ -0.48
LINC01088-211ENST00000515597 ANKRD13DQ6ZTN6 518 aa12.05□□□□□ -0.48
LINC01088-211ENST00000515597 KDM4FA0A1W2PPD8 638 aa12.04□□□□□ -0.48
LINC01088-211ENST00000515597 POTEEQ6S8J3 1075 aa12.04□□□□□ -0.48
LINC01088-211ENST00000515597 NCKAP5LQ9HCH0 1330 aa12.04□□□□□ -0.48
LINC01088-211ENST00000515597 AXIN2Q9Y2T1 843 aa12.03□□□□□ -0.48
LINC01088-211ENST00000515597 LSM11P83369 360 aaKnown RBP eCLIP12.02□□□□□ -0.494e-6■■■■■ 28.9
LINC01088-211ENST00000515597 PPP1R15BQ5SWA1 713 aa12.02□□□□□ -0.49
LINC01088-211ENST00000515597 UPF1Q92900 1129 aaKnown RBP eCLIP12.02□□□□□ -0.49
LINC01088-211ENST00000515597 RNF166Q96A37 237 aaPredicted RBP12.01□□□□□ -0.49
LINC01088-211ENST00000515597 MYT1LQ9UL68 1186 aa12.01□□□□□ -0.49
LINC01088-211ENST00000515597 PBX2P40425 430 aa11.99□□□□□ -0.49
LINC01088-211ENST00000515597 TBC1D12O60347 775 aa11.97□□□□□ -0.49
LINC01088-211ENST00000515597 OXER1Q8TDS5 423 aa11.97□□□□□ -0.49
LINC01088-211ENST00000515597 PDE4AP27815 886 aa11.96□□□□□ -0.49
LINC01088-211ENST00000515597 PSDA5PKW4 1024 aaPredicted RBP11.95□□□□□ -0.5
LINC01088-211ENST00000515597 LARP6Q9BRS8 491 aaKnown RBP11.95□□□□□ -0.5
LINC01088-211ENST00000515597 CADPS2Q86UW7 1296 aa11.93□□□□□ -0.5
LINC01088-211ENST00000515597 PTGER2P43116 358 aa11.92□□□□□ -0.5
LINC01088-211ENST00000515597 DDX27Q96GQ7 796 aaKnown RBP11.92□□□□□ -0.5
LINC01088-211ENST00000515597 PPP4R3BQ5MIZ7 849 aa11.91□□□□□ -0.5
LINC01088-211ENST00000515597 ARHGAP33O14559 1287 aa11.9□□□□□ -0.5
LINC01088-211ENST00000515597 PSEN2P49810 448 aa11.9□□□□□ -0.5
LINC01088-211ENST00000515597 DMRTA1Q5VZB9 504 aa11.89□□□□□ -0.51
LINC01088-211ENST00000515597 MFSD10Q14728 455 aa11.88□□□□□ -0.51
LINC01088-211ENST00000515597 ADGRD1Q6QNK2 874 aa11.86□□□□□ -0.51
LINC01088-211ENST00000515597 RTN4Q9NQC3 1192 aaKnown RBP11.86□□□□□ -0.51
LINC01088-211ENST00000515597 AMER1Q5JTC6 1135 aaPredicted RBP11.85□□□□□ -0.51
LINC01088-211ENST00000515597 ZNF454Q8N9F8 522 aa11.85□□□□□ -0.51
LINC01088-211ENST00000515597 KCNK17Q96T54 332 aa11.85□□□□□ -0.51
LINC01088-211ENST00000515597 EVI5O60447 810 aa11.83□□□□□ -0.52
LINC01088-211ENST00000515597 BBXQ8WY36 941 aaPredicted RBP11.83□□□□□ -0.52
LINC01088-211ENST00000515597 EMILIN3Q9NT22 766 aa11.83□□□□□ -0.52
LINC01088-211ENST00000515597 FOSBP53539 338 aa11.8□□□□□ -0.52
LINC01088-211ENST00000515597 MAP3K9P80192 1104 aa11.79□□□□□ -0.52
LINC01088-211ENST00000515597 TK2O00142 265 aa11.78□□□□□ -0.52
LINC01088-211ENST00000515597 ANO8Q9HCE9 1232 aaPredicted RBP11.78□□□□□ -0.52
LINC01088-211ENST00000515597 KCNH8Q96L42 1107 aa11.77□□□□□ -0.53
LINC01088-211ENST00000515597 HRO43593 1189 aa11.76□□□□□ -0.53
LINC01088-211ENST00000515597 JPH4Q96JJ6 628 aa11.76□□□□□ -0.53
LINC01088-211ENST00000515597 BCL2L12Q9HB09 334 aa11.76□□□□□ -0.53
LINC01088-211ENST00000515597 ADAM33Q9BZ11 813 aa11.72□□□□□ -0.53
LINC01088-211ENST00000515597 PTPREP23469 700 aa11.71□□□□□ -0.53
LINC01088-211ENST00000515597 SPRYD3Q8NCJ5 442 aa11.71□□□□□ -0.53
LINC01088-211ENST00000515597 ZDHHC16Q969W1 377 aa11.71□□□□□ -0.53
LINC01088-211ENST00000515597 VPS9D1Q9Y2B5 631 aa11.71□□□□□ -0.53
LINC01088-211ENST00000515597 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.7□□□□□ -0.54
LINC01088-211ENST00000515597 DPYSL4O14531 572 aa11.69□□□□□ -0.54
LINC01088-211ENST00000515597 CAMK2BQ13554 666 aa11.69□□□□□ -0.54
LINC01088-211ENST00000515597 STAC3Q96MF2 364 aa11.68□□□□□ -0.54
LINC01088-211ENST00000515597 PCDHGA10Q9Y5H3 936 aa11.68□□□□□ -0.54
LINC01088-211ENST00000515597 KCTD12Q96CX2 325 aaKnown RBP11.67□□□□□ -0.54
LINC01088-211ENST00000515597 PAXIP1Q6ZW49 1069 aaPredicted RBP11.66□□□□□ -0.54
LINC01088-211ENST00000515597 CFAP44Q96MT7 982 aa11.66□□□□□ -0.54
LINC01088-211ENST00000515597 ZBED2Q9BTP6 218 aa11.65□□□□□ -0.54
LINC01088-211ENST00000515597 HCSTQ9UBK5 93 aa11.65□□□□□ -0.54
LINC01088-211ENST00000515597 SLC4A5Q9BY07 1137 aa11.64□□□□□ -0.55
LINC01088-211ENST00000515597 TYW1BQ6NUM6 668 aa11.61□□□□□ -0.55
LINC01088-211ENST00000515597 PHF14O94880 888 aa11.6□□□□□ -0.55
LINC01088-211ENST00000515597 BHMG1C9JSJ3 638 aaPredicted RBP11.59□□□□□ -0.55
LINC01088-211ENST00000515597 COL9A1P20849 921 aa11.59□□□□□ -0.55
LINC01088-211ENST00000515597 PPP1R3GB7ZBB8 358 aa11.58□□□□□ -0.56
LINC01088-211ENST00000515597 DDX12PQ92771 950 aa11.58□□□□□ -0.56
LINC01088-211ENST00000515597 FBXW7Q969H0 707 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms