RNA–Protein interactions for RNA: ENST00000515529.4

DDR1-279, Transcript of discoidin domain receptor tyrosine kinase 1, human

TSL 4

Gene DDR1, Length 340 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-279	ENST00000515529	LRRC9	Q6ZRR7	1453 aa		40.72	■■■■■ 4.11
DDR1-279	ENST00000515529	DENND4B	O75064	1496 aa	Predicted RBP	40.7	■■■■■ 4.11
DDR1-279	ENST00000515529	ADGRL1	O94910	1474 aa		40.7	■■■■■ 4.11
DDR1-279	ENST00000515529	RAPGEF3	O95398	923 aa		40.69	■■■■■ 4.1
DDR1-279	ENST00000515529	SUPT6H	Q7KZ85	1726 aa	Known RBP	40.68	■■■■■ 4.1
DDR1-279	ENST00000515529	CDC42BPA	Q5VT25	1732 aa		40.67	■■■■■ 4.1
DDR1-279	ENST00000515529	CDC42BPB	Q9Y5S2	1711 aa		40.67	■■■■■ 4.1
DDR1-279	ENST00000515529	GPATCH8	Q9UKJ3	1502 aa	Known RBP	40.66	■■■■■ 4.1
DDR1-279	ENST00000515529	SCAPER	Q9BY12	1400 aa		40.65	■■■■■ 4.1
DDR1-279	ENST00000515529	KANK4	Q5T7N3	995 aa	Predicted RBP	40.63	■■■■■ 4.09
DDR1-279	ENST00000515529	CFDP1	Q9UEE9	299 aa	Predicted RBP	40.63	■■■■■ 4.09
DDR1-279	ENST00000515529	NCOA2	Q15596	1464 aa		40.63	■■■■■ 4.09
DDR1-279	ENST00000515529	ZNF777	Q9ULD5	760 aa	Predicted RBP	40.61	■■■■■ 4.09
DDR1-279	ENST00000515529	ITSN2	Q9NZM3	1697 aa		40.56	■■■■■ 4.08
DDR1-279	ENST00000515529	FRMPD1	Q5SYB0	1578 aa		40.55	■■■■■ 4.08
DDR1-279	ENST00000515529	POGZ	Q7Z3K3	1410 aa		40.53	■■■■■ 4.08
DDR1-279	ENST00000515529	RICTOR	Q6R327	1708 aa		40.53	■■■■■ 4.08
DDR1-279	ENST00000515529	ABCC1	P33527	1531 aa		40.48	■■■■■ 4.07
DDR1-279	ENST00000515529	ZNF518A	Q6AHZ1	1483 aa		40.46	■■■■■ 4.07
DDR1-279	ENST00000515529	PLEKHH2	Q8IVE3	1493 aa		40.45	■■■■■ 4.07
DDR1-279	ENST00000515529	SAMD9L	Q8IVG5	1584 aa		40.44	■■■■■ 4.06
DDR1-279	ENST00000515529	ZMYM4	Q5VZL5	1548 aa		40.42	■■■■■ 4.06
DDR1-279	ENST00000515529	AFAP1	Q8N556	730 aa		40.4	■■■■■ 4.06
DDR1-279	ENST00000515529	MYT1L	Q9UL68	1186 aa		40.39	■■■■■ 4.06
DDR1-279	ENST00000515529	MAGI2	Q86UL8	1455 aa		40.38	■■■■■ 4.05
DDR1-279	ENST00000515529	SYCP2	Q9BX26	1530 aa		40.37	■■■■■ 4.05
DDR1-279	ENST00000515529	ARHGEF12	Q9NZN5	1544 aa		40.37	■■■■■ 4.05
DDR1-279	ENST00000515529	KIAA1107	Q9UPP5	1409 aa		40.36	■■■■■ 4.05
DDR1-279	ENST00000515529	TRAPPC8	Q9Y2L5	1435 aa		40.35	■■■■■ 4.05
DDR1-279	ENST00000515529	HNRNPM	P52272	730 aa	Known RBP eCLIP	40.35	■■■■■ 4.05
DDR1-279	ENST00000515529	ZFYVE16	Q7Z3T8	1539 aa		40.34	■■■■■ 4.05
DDR1-279	ENST00000515529	MYOM3	Q5VTT5	1437 aa		40.33	■■■■■ 4.05
DDR1-279	ENST00000515529	ZNF644	Q9H582	1327 aa	Predicted RBP	40.33	■■■■■ 4.05
DDR1-279	ENST00000515529	ARHGEF40	Q8TER5	1519 aa		40.32	■■■■■ 4.05
DDR1-279	ENST00000515529	KDM5C	P41229	1560 aa		40.31	■■■■■ 4.04
DDR1-279	ENST00000515529	CAMSAP2	Q08AD1	1489 aa		40.27	■■■■■ 4.04
DDR1-279	ENST00000515529	YEATS2	Q9ULM3	1422 aa		40.26	■■■■■ 4.04
DDR1-279	ENST00000515529	HECW2	Q9P2P5	1572 aa		40.26	■■■■■ 4.04
DDR1-279	ENST00000515529	MIA2	Q96PC5	1412 aa		40.25	■■■■■ 4.03
DDR1-279	ENST00000515529	MLH3	Q9UHC1	1453 aa		40.21	■■■■■ 4.03
DDR1-279	ENST00000515529	SPAG9	O60271	1321 aa	Known RBP	40.2	■■■■■ 4.03
DDR1-279	ENST00000515529	ARID4B	Q4LE39	1312 aa	Predicted RBP	40.2	■■■■■ 4.03
DDR1-279	ENST00000515529	ATP10A	O60312	1499 aa		40.16	■■■■■ 4.02
DDR1-279	ENST00000515529	MBD5	Q9P267	1494 aa		40.16	■■■■■ 4.02
DDR1-279	ENST00000515529	RSPH4A	Q5TD94	716 aa		40.16	■■■■■ 4.02
DDR1-279	ENST00000515529	C9orf84	Q5VXU9	1444 aa		40.12	■■■■■ 4.01
DDR1-279	ENST00000515529	PPARGC1B	Q86YN6	1023 aa	Known RBP	40.12	■■■■■ 4.01
DDR1-279	ENST00000515529	CCDC141	Q6ZP82	1450 aa		40.12	■■■■■ 4.01
DDR1-279	ENST00000515529	FGD6	Q6ZV73	1430 aa		40.11	■■■■■ 4.01
DDR1-279	ENST00000515529	DIP2C	Q9Y2E4	1556 aa		40.08	■■■■■ 4.01
DDR1-279	ENST00000515529	ATP7A	Q04656	1500 aa		40.07	■■■■■ 4.01
DDR1-279	ENST00000515529	PTPN23	Q9H3S7	1636 aa		40.07	■■■■■ 4.01
DDR1-279	ENST00000515529	KDM4F	A0A1W2PPD8	638 aa		40.07	■■■■■ 4.01
DDR1-279	ENST00000515529	AEBP2	Q6ZN18	517 aa	Predicted RBP	40.07	■■■■■ 4.01
DDR1-279	ENST00000515529	KIDINS220	Q9ULH0	1771 aa		40.07	■■■■■ 4
DDR1-279	ENST00000515529	ARHGEF5	Q12774	1597 aa		40.06	■■■■■ 4
DDR1-279	ENST00000515529	ABCA6	Q8N139	1617 aa		40.05	■■■■■ 4
DDR1-279	ENST00000515529	TSPY4	P0CV99	314 aa		40.04	■■■■■ 4
DDR1-279	ENST00000515529	TSPY10	P0CW01	314 aa		40.04	■■■■■ 4
DDR1-279	ENST00000515529	INO80	Q9ULG1	1556 aa	Predicted RBP	40.03	■■■■■ 4
DDR1-279	ENST00000515529	RTEL1-TNFRSF6B	F6WH68	1400 aa		39.99	■■■■□ 3.99
DDR1-279	ENST00000515529	TCOF1	Q13428	1488 aa	Known RBP	39.97	■■■■□ 3.99
DDR1-279	ENST00000515529	RERE	Q9P2R6	1566 aa		39.95	■■■■□ 3.99
DDR1-279	ENST00000515529	FAM50A	Q14320	339 aa	Known RBP	39.94	■■■■□ 3.98
DDR1-279	ENST00000515529	BCORL1	Q5H9F3	1711 aa		39.93	■■■■□ 3.98
DDR1-279	ENST00000515529	MLEC	Q14165	292 aa		39.92	■■■■□ 3.98
DDR1-279	ENST00000515529	SIGLEC1	Q9BZZ2	1709 aa		39.91	■■■■□ 3.98
DDR1-279	ENST00000515529	A2M	P01023	1474 aa		39.87	■■■■□ 3.97
DDR1-279	ENST00000515529	ADGB	Q8N7X0	1667 aa		39.85	■■■■□ 3.97
DDR1-279	ENST00000515529	ADAMTSL3	P82987	1691 aa		39.84	■■■■□ 3.97
DDR1-279	ENST00000515529	AGL	P35573	1532 aa		39.84	■■■■□ 3.97
DDR1-279	ENST00000515529	MAST1	Q9Y2H9	1570 aa		39.83	■■■■□ 3.97
DDR1-279	ENST00000515529	DAPK1	P53355	1430 aa		39.82	■■■■□ 3.97
DDR1-279	ENST00000515529	DNMT1	P26358	1616 aa	Known RBP	39.82	■■■■□ 3.96
DDR1-279	ENST00000515529	ABCC5	O15440	1437 aa		39.82	■■■■□ 3.96
DDR1-279	ENST00000515529	SHANK2	Q9UPX8	1470 aa		39.79	■■■■□ 3.96
DDR1-279	ENST00000515529	MADD	Q8WXG6	1647 aa		39.77	■■■■□ 3.96
DDR1-279	ENST00000515529	CROCC2	H7BZ55	1655 aa		39.76	■■■■□ 3.96
DDR1-279	ENST00000515529	PLXNC1	O60486	1568 aa		39.76	■■■■□ 3.95
DDR1-279	ENST00000515529	DHX29	Q7Z478	1369 aa	Known RBP	39.75	■■■■□ 3.95
DDR1-279	ENST00000515529	ESF1	Q9H501	851 aa	Known RBP	39.71	■■■■□ 3.95
DDR1-279	ENST00000515529	CHIC2	Q9UKJ5	165 aa		39.69	■■■■□ 3.94
DDR1-279	ENST00000515529	RIMS1	Q86UR5	1692 aa	Known RBP	39.68	■■■■□ 3.94
DDR1-279	ENST00000515529	FER1L4	A9Z1Z3	1794 aa		39.68	■■■■□ 3.94
DDR1-279	ENST00000515529	PTPRM	P28827	1452 aa		39.66	■■■■□ 3.94
DDR1-279	ENST00000515529	ANKRD30A	Q9BXX3	1397 aa		39.65	■■■■□ 3.94
DDR1-279	ENST00000515529	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	39.63	■■■■□ 3.93
DDR1-279	ENST00000515529	KIF15	Q9NS87	1388 aa		39.63	■■■■□ 3.93
DDR1-279	ENST00000515529	GGT6	Q6P531	493 aa		39.63	■■■■□ 3.93
DDR1-279	ENST00000515529	KIF3B	O15066	747 aa		39.62	■■■■□ 3.93
DDR1-279	ENST00000515529	RRP7BP	Q9NSQ0	103 aa		39.62	■■■■□ 3.93
DDR1-279	ENST00000515529	DUOX2	Q9NRD8	1548 aa		39.6	■■■■□ 3.93
DDR1-279	ENST00000515529	RRBP1	Q9P2E9	1410 aa	Known RBP	39.59	■■■■□ 3.93
DDR1-279	ENST00000515529	ITGAE	P38570	1179 aa		39.58	■■■■□ 3.93
DDR1-279	ENST00000515529	PLPPR3	Q6T4P5	718 aa		39.58	■■■■□ 3.93
DDR1-279	ENST00000515529	NCOA1	Q15788	1441 aa		39.53	■■■■□ 3.92
DDR1-279	ENST00000515529	CNTLN	Q9NXG0	1405 aa		39.53	■■■■□ 3.92
DDR1-279	ENST00000515529	ADGRL2	O95490	1459 aa		39.53	■■■■□ 3.92
DDR1-279	ENST00000515529	PPP6R1	Q9UPN7	881 aa		39.52	■■■■□ 3.92
DDR1-279	ENST00000515529	ERBIN	Q96RT1	1412 aa		39.48	■■■■□ 3.91

Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms