RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 RIMBP2O15034 1052 aa12.54□□□□□ -0.4
NUP54-218ENST00000515460 HS3ST6Q96QI5 342 aa12.54□□□□□ -0.4
NUP54-218ENST00000515460 POTEB3A0JP26 581 aa12.53□□□□□ -0.4
NUP54-218ENST00000515460 HOXB1P14653 301 aaPredicted RBP12.53□□□□□ -0.4
NUP54-218ENST00000515460 POTEBQ6S5H4 581 aa12.53□□□□□ -0.4
NUP54-218ENST00000515460 CHGAP10645 457 aaKnown RBP12.52□□□□□ -0.41
NUP54-218ENST00000515460 PPP1R37O75864 691 aa12.51□□□□□ -0.41
NUP54-218ENST00000515460 HS6ST3Q8IZP7 471 aa12.49□□□□□ -0.41
NUP54-218ENST00000515460 ERBB3P21860 1342 aa12.48□□□□□ -0.41
NUP54-218ENST00000515460 C2orf72A6NCS6 295 aa12.46□□□□□ -0.41
NUP54-218ENST00000515460 ARSIQ5FYB1 569 aa12.43□□□□□ -0.42
NUP54-218ENST00000515460 GPR153Q6NV75 609 aa12.43□□□□□ -0.42
NUP54-218ENST00000515460 ZSWIM6Q9HCJ5 1215 aa12.43□□□□□ -0.42
NUP54-218ENST00000515460 ABCC9O60706 1549 aa12.42□□□□□ -0.42
NUP54-218ENST00000515460 TMC2Q8TDI7 906 aa12.42□□□□□ -0.42
NUP54-218ENST00000515460 KIF3CO14782 793 aa12.41□□□□□ -0.42
NUP54-218ENST00000515460 VARS2Q5ST30 1063 aaKnown RBP12.41□□□□□ -0.42
NUP54-218ENST00000515460 SPNS2Q8IVW8 549 aa12.41□□□□□ -0.42
NUP54-218ENST00000515460 KHSRPQ92945 711 aaKnown RBP eCLIP12.4□□□□□ -0.426e-7■■■□□ 16.7
NUP54-218ENST00000515460 KRTAP3-3Q9BYR6 98 aa12.4□□□□□ -0.42
NUP54-218ENST00000515460 KRTAP3-2Q9BYR7 98 aa12.4□□□□□ -0.42
NUP54-218ENST00000515460 DCAF8L2P0C7V8 631 aa12.37□□□□□ -0.43
NUP54-218ENST00000515460 NKX1-1Q15270 411 aaPredicted RBP12.37□□□□□ -0.43
NUP54-218ENST00000515460 MMRN1Q13201 1228 aa12.34□□□□□ -0.43
NUP54-218ENST00000515460 NUDT7P0C024 238 aa12.29□□□□□ -0.44
NUP54-218ENST00000515460 ZNF316A6NFI3 1004 aaPredicted RBP12.28□□□□□ -0.44
NUP54-218ENST00000515460 PCDHGA4Q9Y5G9 962 aa12.28□□□□□ -0.44
NUP54-218ENST00000515460 ZNF687Q8N1G0 1237 aa12.27□□□□□ -0.45
NUP54-218ENST00000515460 SLC34A2O95436 690 aa12.25□□□□□ -0.45
NUP54-218ENST00000515460 RYDENQ9NUL5 291 aaKnown RBP12.25□□□□□ -0.45
NUP54-218ENST00000515460 PLPP6Q8IY26 295 aa12.24□□□□□ -0.45
NUP54-218ENST00000515460 GPHNQ9NQX3 736 aaPredicted RBP12.24□□□□□ -0.45
NUP54-218ENST00000515460 FOXK1P85037 733 aa12.22□□□□□ -0.45
NUP54-218ENST00000515460 DSG2Q14126 1118 aa12.22□□□□□ -0.45
NUP54-218ENST00000515460 LHX6Q9UPM6 363 aa12.21□□□□□ -0.45
NUP54-218ENST00000515460 NISCHQ9Y2I1 1504 aa12.21□□□□□ -0.46
NUP54-218ENST00000515460 AMER1Q5JTC6 1135 aaPredicted RBP12.2□□□□□ -0.46
NUP54-218ENST00000515460 GTPBP6O43824 516 aaPredicted RBP12.18□□□□□ -0.46
NUP54-218ENST00000515460 ANKRD13DQ6ZTN6 518 aa12.17□□□□□ -0.46
NUP54-218ENST00000515460 PTCD2Q8WV60 388 aaKnown RBP12.15□□□□□ -0.46
NUP54-218ENST00000515460 AXIN2Q9Y2T1 843 aa12.12□□□□□ -0.47
NUP54-218ENST00000515460 TBC1D12O60347 775 aa12.11□□□□□ -0.47
NUP54-218ENST00000515460 CRISPLD2Q9H0B8 497 aa12.11□□□□□ -0.47
NUP54-218ENST00000515460 UPF1Q92900 1129 aaKnown RBP eCLIP12.1□□□□□ -0.47
NUP54-218ENST00000515460 NCKAP5LQ9HCH0 1330 aa12.1□□□□□ -0.47
NUP54-218ENST00000515460 PDE4AP27815 886 aa12.09□□□□□ -0.47
NUP54-218ENST00000515460 KDM4FA0A1W2PPD8 638 aa12.08□□□□□ -0.48
NUP54-218ENST00000515460 LSM11P83369 360 aaKnown RBP eCLIP12.08□□□□□ -0.48
NUP54-218ENST00000515460 PPP1R15BQ5SWA1 713 aa12.08□□□□□ -0.48
NUP54-218ENST00000515460 MYT1LQ9UL68 1186 aa12.08□□□□□ -0.48
NUP54-218ENST00000515460 POTEEQ6S8J3 1075 aa12.07□□□□□ -0.48
NUP54-218ENST00000515460 RNF166Q96A37 237 aaPredicted RBP12.07□□□□□ -0.48
NUP54-218ENST00000515460 LARP6Q9BRS8 491 aaKnown RBP12.06□□□□□ -0.48
NUP54-218ENST00000515460 PBX2P40425 430 aa12.05□□□□□ -0.48
NUP54-218ENST00000515460 RTN4Q9NQC3 1192 aaKnown RBP12.04□□□□□ -0.48
NUP54-218ENST00000515460 PSDA5PKW4 1024 aaPredicted RBP12.03□□□□□ -0.48
NUP54-218ENST00000515460 OXER1Q8TDS5 423 aa12.03□□□□□ -0.48
NUP54-218ENST00000515460 ARHGAP33O14559 1287 aa12□□□□□ -0.49
NUP54-218ENST00000515460 DDX27Q96GQ7 796 aaKnown RBP12□□□□□ -0.49
NUP54-218ENST00000515460 PPP4R3BQ5MIZ7 849 aa11.99□□□□□ -0.49
NUP54-218ENST00000515460 CADPS2Q86UW7 1296 aa11.99□□□□□ -0.49
NUP54-218ENST00000515460 PTGER2P43116 358 aa11.98□□□□□ -0.49
NUP54-218ENST00000515460 PSEN2P49810 448 aa11.97□□□□□ -0.49
NUP54-218ENST00000515460 BBXQ8WY36 941 aaPredicted RBP11.95□□□□□ -0.5
NUP54-218ENST00000515460 DMRTA1Q5VZB9 504 aa11.94□□□□□ -0.5
NUP54-218ENST00000515460 ZNF454Q8N9F8 522 aa11.94□□□□□ -0.5
NUP54-218ENST00000515460 ADGRD1Q6QNK2 874 aa11.93□□□□□ -0.5
NUP54-218ENST00000515460 MAP3K9P80192 1104 aa11.92□□□□□ -0.5
NUP54-218ENST00000515460 MFSD10Q14728 455 aa11.92□□□□□ -0.5
NUP54-218ENST00000515460 KCNK17Q96T54 332 aa11.92□□□□□ -0.5
NUP54-218ENST00000515460 EVI5O60447 810 aa11.91□□□□□ -0.5
NUP54-218ENST00000515460 KCNH8Q96L42 1107 aa11.89□□□□□ -0.51
NUP54-218ENST00000515460 EMILIN3Q9NT22 766 aa11.89□□□□□ -0.51
NUP54-218ENST00000515460 ANO8Q9HCE9 1232 aaPredicted RBP11.86□□□□□ -0.51
NUP54-218ENST00000515460 TK2O00142 265 aa11.85□□□□□ -0.51
NUP54-218ENST00000515460 FOSBP53539 338 aa11.85□□□□□ -0.51
NUP54-218ENST00000515460 SPRYD3Q8NCJ5 442 aa11.85□□□□□ -0.51
NUP54-218ENST00000515460 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.84□□□□□ -0.51
NUP54-218ENST00000515460 STAC3Q96MF2 364 aa11.83□□□□□ -0.52
NUP54-218ENST00000515460 BCL2L12Q9HB09 334 aa11.82□□□□□ -0.52
NUP54-218ENST00000515460 HRO43593 1189 aa11.81□□□□□ -0.52
NUP54-218ENST00000515460 JPH4Q96JJ6 628 aa11.81□□□□□ -0.52
NUP54-218ENST00000515460 PTPREP23469 700 aa11.8□□□□□ -0.52
NUP54-218ENST00000515460 ZDHHC16Q969W1 377 aa11.8□□□□□ -0.52
NUP54-218ENST00000515460 CFAP44Q96MT7 982 aa11.8□□□□□ -0.52
NUP54-218ENST00000515460 ADAM33Q9BZ11 813 aa11.79□□□□□ -0.52
NUP54-218ENST00000515460 PAXIP1Q6ZW49 1069 aaPredicted RBP11.78□□□□□ -0.52
NUP54-218ENST00000515460 VPS9D1Q9Y2B5 631 aa11.78□□□□□ -0.52
NUP54-218ENST00000515460 DPYSL4O14531 572 aa11.76□□□□□ -0.53
NUP54-218ENST00000515460 KCTD12Q96CX2 325 aaKnown RBP11.76□□□□□ -0.53
NUP54-218ENST00000515460 CAMK2BQ13554 666 aa11.75□□□□□ -0.53
NUP54-218ENST00000515460 HCSTQ9UBK5 93 aa11.75□□□□□ -0.53
NUP54-218ENST00000515460 PCDHGA10Q9Y5H3 936 aa11.75□□□□□ -0.53
NUP54-218ENST00000515460 ZBED2Q9BTP6 218 aa11.71□□□□□ -0.53
NUP54-218ENST00000515460 SLC4A5Q9BY07 1137 aa11.7□□□□□ -0.54
NUP54-218ENST00000515460 PHF14O94880 888 aa11.68□□□□□ -0.54
NUP54-218ENST00000515460 TYW1BQ6NUM6 668 aa11.68□□□□□ -0.54
NUP54-218ENST00000515460 DDX12PQ92771 950 aa11.67□□□□□ -0.54
NUP54-218ENST00000515460 GOLGA8CPA6NN73 597 aa11.66□□□□□ -0.54
NUP54-218ENST00000515460 PTPN5P54829 565 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms