RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 ARHGAP5Q13017 1502 aa22.3■■□□□ 1.16
NUP54-216ENST00000514901 GPATCH8Q9UKJ3 1502 aaKnown RBP22.29■■□□□ 1.16
NUP54-216ENST00000514901 SUPT6HQ7KZ85 1726 aaKnown RBP22.27■■□□□ 1.16
NUP54-216ENST00000514901 CFDP1Q9UEE9 299 aaPredicted RBP22.27■■□□□ 1.16
NUP54-216ENST00000514901 PREX2Q70Z35 1606 aa22.26■■□□□ 1.15
NUP54-216ENST00000514901 NCOA2Q15596 1464 aa22.26■■□□□ 1.15
NUP54-216ENST00000514901 DENND4BO75064 1496 aaPredicted RBP22.25■■□□□ 1.15
NUP54-216ENST00000514901 CDC42BPAQ5VT25 1732 aa22.25■■□□□ 1.15
NUP54-216ENST00000514901 CDC42BPBQ9Y5S2 1711 aa22.25■■□□□ 1.15
NUP54-216ENST00000514901 ADGRL1O94910 1474 aa22.24■■□□□ 1.15
NUP54-216ENST00000514901 RAPGEF3O95398 923 aa22.24■■□□□ 1.15
NUP54-216ENST00000514901 SCAPERQ9BY12 1400 aa22.23■■□□□ 1.15
NUP54-216ENST00000514901 ZNF777Q9ULD5 760 aaPredicted RBP22.21■■□□□ 1.15
NUP54-216ENST00000514901 ITSN2Q9NZM3 1697 aa22.17■■□□□ 1.14
NUP54-216ENST00000514901 PLEKHH2Q8IVE3 1493 aa22.17■■□□□ 1.14
NUP54-216ENST00000514901 POGZQ7Z3K3 1410 aa22.15■■□□□ 1.14
NUP54-216ENST00000514901 KIAA1107Q9UPP5 1409 aa22.15■■□□□ 1.14
NUP54-216ENST00000514901 ABCC1P33527 1531 aa22.13■■□□□ 1.13
NUP54-216ENST00000514901 RICTORQ6R327 1708 aa22.13■■□□□ 1.13
NUP54-216ENST00000514901 ZNF518AQ6AHZ1 1483 aa22.13■■□□□ 1.13
NUP54-216ENST00000514901 AFAP1Q8N556 730 aa22.12■■□□□ 1.13
NUP54-216ENST00000514901 MYOM3Q5VTT5 1437 aa22.12■■□□□ 1.13
NUP54-216ENST00000514901 FRMPD1Q5SYB0 1578 aa22.12■■□□□ 1.13
NUP54-216ENST00000514901 MAGI2Q86UL8 1455 aa22.11■■□□□ 1.13
NUP54-216ENST00000514901 MIA2Q96PC5 1412 aa22.11■■□□□ 1.13
NUP54-216ENST00000514901 SAMD9LQ8IVG5 1584 aa22.11■■□□□ 1.13
NUP54-216ENST00000514901 HNRNPMP52272 730 aaKnown RBP eCLIP22.1■■□□□ 1.13
NUP54-216ENST00000514901 RSPH4AQ5TD94 716 aa22.1■■□□□ 1.13
NUP54-216ENST00000514901 ZNF644Q9H582 1327 aaPredicted RBP22.09■■□□□ 1.13
NUP54-216ENST00000514901 ZMYM4Q5VZL5 1548 aa22.09■■□□□ 1.13
NUP54-216ENST00000514901 ARHGEF12Q9NZN5 1544 aa22.09■■□□□ 1.13
NUP54-216ENST00000514901 TRAPPC8Q9Y2L5 1435 aa22.07■■□□□ 1.12
NUP54-216ENST00000514901 SYCP2Q9BX26 1530 aa22.06■■□□□ 1.12
NUP54-216ENST00000514901 MYT1LQ9UL68 1186 aa22.05■■□□□ 1.12
NUP54-216ENST00000514901 KDM5CP41229 1560 aa22.04■■□□□ 1.12
NUP54-216ENST00000514901 CAMSAP2Q08AD1 1489 aa22.03■■□□□ 1.12
NUP54-216ENST00000514901 MLH3Q9UHC1 1453 aa22.03■■□□□ 1.12
NUP54-216ENST00000514901 MBD5Q9P267 1494 aa22.03■■□□□ 1.12
NUP54-216ENST00000514901 SPAG9O60271 1321 aaKnown RBP22.02■■□□□ 1.12
NUP54-216ENST00000514901 ZFYVE16Q7Z3T8 1539 aa22.01■■□□□ 1.11
NUP54-216ENST00000514901 FGD6Q6ZV73 1430 aa21.99■■□□□ 1.11
NUP54-216ENST00000514901 ARHGEF40Q8TER5 1519 aa21.99■■□□□ 1.11
NUP54-216ENST00000514901 YEATS2Q9ULM3 1422 aa21.98■■□□□ 1.11
NUP54-216ENST00000514901 TSPY4P0CV99 314 aa21.98■■□□□ 1.11
NUP54-216ENST00000514901 TSPY10P0CW01 314 aa21.98■■□□□ 1.11
NUP54-216ENST00000514901 PPARGC1BQ86YN6 1023 aaKnown RBP21.98■■□□□ 1.11
NUP54-216ENST00000514901 HECW2Q9P2P5 1572 aa21.98■■□□□ 1.11
NUP54-216ENST00000514901 ATP10AO60312 1499 aa21.97■■□□□ 1.11
NUP54-216ENST00000514901 CCDC141Q6ZP82 1450 aa21.96■■□□□ 1.11
NUP54-216ENST00000514901 ARHGEF5Q12774 1597 aa21.95■■□□□ 1.1
NUP54-216ENST00000514901 RTEL1-TNFRSF6BF6WH68 1400 aa21.94■■□□□ 1.1
NUP54-216ENST00000514901 PTPN23Q9H3S7 1636 aa21.94■■□□□ 1.1
NUP54-216ENST00000514901 TCOF1Q13428 1488 aaKnown RBP21.93■■□□□ 1.1
NUP54-216ENST00000514901 ARID4BQ4LE39 1312 aaPredicted RBP21.93■■□□□ 1.1
NUP54-216ENST00000514901 C9orf84Q5VXU9 1444 aa21.93■■□□□ 1.1
NUP54-216ENST00000514901 KIDINS220Q9ULH0 1771 aa21.91■■□□□ 1.1
NUP54-216ENST00000514901 ATP7AQ04656 1500 aa21.9■■□□□ 1.1
NUP54-216ENST00000514901 FAM50AQ14320 339 aaKnown RBP21.89■■□□□ 1.09
NUP54-216ENST00000514901 DIP2CQ9Y2E4 1556 aa21.88■■□□□ 1.09
NUP54-216ENST00000514901 INO80Q9ULG1 1556 aaPredicted RBP21.87■■□□□ 1.09
NUP54-216ENST00000514901 KDM4FA0A1W2PPD8 638 aa21.87■■□□□ 1.09
NUP54-216ENST00000514901 ABCA6Q8N139 1617 aa21.86■■□□□ 1.09
NUP54-216ENST00000514901 REREQ9P2R6 1566 aa21.86■■□□□ 1.09
NUP54-216ENST00000514901 ABCC5O15440 1437 aa21.85■■□□□ 1.09
NUP54-216ENST00000514901 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.83■■□□□ 1.08
NUP54-216ENST00000514901 DAPK1P53355 1430 aa21.82■■□□□ 1.08
NUP54-216ENST00000514901 A2MP01023 1474 aa21.82■■□□□ 1.08
NUP54-216ENST00000514901 MAST1Q9Y2H9 1570 aa21.82■■□□□ 1.08
NUP54-216ENST00000514901 AGLP35573 1532 aa21.81■■□□□ 1.08
NUP54-216ENST00000514901 SHANK2Q9UPX8 1470 aa21.81■■□□□ 1.08
NUP54-216ENST00000514901 DNMT1P26358 1616 aaKnown RBP21.8■■□□□ 1.08
NUP54-216ENST00000514901 DHX29Q7Z478 1369 aaKnown RBP21.8■■□□□ 1.08
NUP54-216ENST00000514901 ADGBQ8N7X0 1667 aa21.79■■□□□ 1.08
NUP54-216ENST00000514901 BCORL1Q5H9F3 1711 aa21.77■■□□□ 1.08
NUP54-216ENST00000514901 MLECQ14165 292 aa21.77■■□□□ 1.08
NUP54-216ENST00000514901 AEBP2Q6ZN18 517 aaPredicted RBP21.77■■□□□ 1.08
NUP54-216ENST00000514901 RRBP1Q9P2E9 1410 aaKnown RBP21.77■■□□□ 1.08
NUP54-216ENST00000514901 SIGLEC1Q9BZZ2 1709 aa21.75■■□□□ 1.07
NUP54-216ENST00000514901 ANKRD30AQ9BXX3 1397 aa21.74■■□□□ 1.07
NUP54-216ENST00000514901 CHIC2Q9UKJ5 165 aa21.74■■□□□ 1.07
NUP54-216ENST00000514901 ADAMTSL3P82987 1691 aa21.74■■□□□ 1.07
NUP54-216ENST00000514901 PLXNC1O60486 1568 aa21.74■■□□□ 1.07
NUP54-216ENST00000514901 CROCC2H7BZ55 1655 aa21.73■■□□□ 1.07
NUP54-216ENST00000514901 PPP6R1Q9UPN7 881 aa21.73■■□□□ 1.07
NUP54-216ENST00000514901 RRP7BPQ9NSQ0 103 aa21.72■■□□□ 1.07
NUP54-216ENST00000514901 KIF15Q9NS87 1388 aa21.71■■□□□ 1.07
NUP54-216ENST00000514901 NCOA1Q15788 1441 aa21.71■■□□□ 1.07
NUP54-216ENST00000514901 ESF1Q9H501 851 aaKnown RBP21.7■■□□□ 1.06
NUP54-216ENST00000514901 KIF3BO15066 747 aa21.69■■□□□ 1.06
NUP54-216ENST00000514901 ADGRL2O95490 1459 aa21.69■■□□□ 1.06
NUP54-216ENST00000514901 DUOX2Q9NRD8 1548 aa21.69■■□□□ 1.06
NUP54-216ENST00000514901 ITGAEP38570 1179 aa21.67■■□□□ 1.06
NUP54-216ENST00000514901 GGT6Q6P531 493 aa21.67■■□□□ 1.06
NUP54-216ENST00000514901 ROCK1Q13464 1354 aa21.66■■□□□ 1.06
NUP54-216ENST00000514901 MADDQ8WXG6 1647 aa21.66■■□□□ 1.06
NUP54-216ENST00000514901 PTPRKQ15262 1439 aa21.65■■□□□ 1.06
NUP54-216ENST00000514901 PTPRMP28827 1452 aa21.64■■□□□ 1.05
NUP54-216ENST00000514901 ERBINQ96RT1 1412 aa21.63■■□□□ 1.05
NUP54-216ENST00000514901 CNTLNQ9NXG0 1405 aa21.63■■□□□ 1.05
NUP54-216ENST00000514901 FER1L4A9Z1Z3 1794 aa21.62■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms