RNA–Protein interactions for RNA: ENST00000513946.1

PROM1-216, Transcript of prominin 1, humanhuman

TSL 3

Gene PROM1, Length 581 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1-216ENST00000513946 MARVELD3Q96A59 401 aa9.36□□□□□ -0.91
PROM1-216ENST00000513946 GTPBP6O43824 516 aaPredicted RBP9.35□□□□□ -0.91
PROM1-216ENST00000513946 POTEB3A0JP26 581 aa9.34□□□□□ -0.91
PROM1-216ENST00000513946 HOXB1P14653 301 aaPredicted RBP9.34□□□□□ -0.91
PROM1-216ENST00000513946 DOK7Q18PE1 504 aa9.34□□□□□ -0.91
PROM1-216ENST00000513946 POTEBQ6S5H4 581 aa9.34□□□□□ -0.91
PROM1-216ENST00000513946 RTN4Q9NQC3 1192 aaKnown RBP9.34□□□□□ -0.91
PROM1-216ENST00000513946 CDAN1Q8IWY9 1227 aa9.33□□□□□ -0.92
PROM1-216ENST00000513946 AMER1Q5JTC6 1135 aaPredicted RBP9.32□□□□□ -0.92
PROM1-216ENST00000513946 GPR153Q6NV75 609 aa9.32□□□□□ -0.92
PROM1-216ENST00000513946 ZNF710Q8N1W2 664 aa9.29□□□□□ -0.92
PROM1-216ENST00000513946 ZSWIM6Q9HCJ5 1215 aa9.29□□□□□ -0.92
PROM1-216ENST00000513946 DCAF8L2P0C7V8 631 aa9.28□□□□□ -0.92
PROM1-216ENST00000513946 EMP3P54852 163 aa9.27□□□□□ -0.93
PROM1-216ENST00000513946 RYDENQ9NUL5 291 aaKnown RBP9.27□□□□□ -0.93
PROM1-216ENST00000513946 FAM205CA6NFA0 338 aa9.26□□□□□ -0.93
PROM1-216ENST00000513946 HS3ST6Q96QI5 342 aa9.26□□□□□ -0.93
PROM1-216ENST00000513946 GPHNQ9NQX3 736 aaPredicted RBP9.26□□□□□ -0.93
PROM1-216ENST00000513946 SLC34A2O95436 690 aa9.25□□□□□ -0.93
PROM1-216ENST00000513946 FOXK1P85037 733 aa9.25□□□□□ -0.93
PROM1-216ENST00000513946 TMC2Q8TDI7 906 aa9.25□□□□□ -0.93
PROM1-216ENST00000513946 RIMBP2O15034 1052 aa9.24□□□□□ -0.93
PROM1-216ENST00000513946 ARSIQ5FYB1 569 aa9.24□□□□□ -0.93
PROM1-216ENST00000513946 KHSRPQ92945 711 aaKnown RBP eCLIP9.23□□□□□ -0.93
PROM1-216ENST00000513946 CRISPLD2Q9H0B8 497 aa9.22□□□□□ -0.93
PROM1-216ENST00000513946 DSG2Q14126 1118 aa9.21□□□□□ -0.94
PROM1-216ENST00000513946 BBXQ8WY36 941 aaPredicted RBP9.21□□□□□ -0.94
PROM1-216ENST00000513946 PLPP6Q8IY26 295 aa9.2□□□□□ -0.94
PROM1-216ENST00000513946 KRTAP3-3Q9BYR6 98 aa9.2□□□□□ -0.94
PROM1-216ENST00000513946 KRTAP3-2Q9BYR7 98 aa9.2□□□□□ -0.94
PROM1-216ENST00000513946 NCKAP5LQ9HCH0 1330 aa9.2□□□□□ -0.94
PROM1-216ENST00000513946 KDM4FA0A1W2PPD8 638 aa9.19□□□□□ -0.94
PROM1-216ENST00000513946 PCDHGA4Q9Y5G9 962 aa9.19□□□□□ -0.94
PROM1-216ENST00000513946 ERBB3P21860 1342 aa9.18□□□□□ -0.94
PROM1-216ENST00000513946 PTCD2Q8WV60 388 aaKnown RBP9.18□□□□□ -0.94
PROM1-216ENST00000513946 ZNF316A6NFI3 1004 aaPredicted RBP9.15□□□□□ -0.94
PROM1-216ENST00000513946 PDE4AP27815 886 aa9.15□□□□□ -0.94
PROM1-216ENST00000513946 VARS2Q5ST30 1063 aaKnown RBP9.15□□□□□ -0.94
PROM1-216ENST00000513946 CADPS2Q86UW7 1296 aa9.15□□□□□ -0.94
PROM1-216ENST00000513946 NUDT7P0C024 238 aa9.14□□□□□ -0.95
PROM1-216ENST00000513946 ZNF687Q8N1G0 1237 aa9.14□□□□□ -0.95
PROM1-216ENST00000513946 SPNS2Q8IVW8 549 aa9.12□□□□□ -0.95
PROM1-216ENST00000513946 MFSD10Q14728 455 aa9.11□□□□□ -0.95
PROM1-216ENST00000513946 LHX6Q9UPM6 363 aa9.11□□□□□ -0.95
PROM1-216ENST00000513946 PPP1R15BQ5SWA1 713 aa9.1□□□□□ -0.95
PROM1-216ENST00000513946 OXER1Q8TDS5 423 aa9.1□□□□□ -0.95
PROM1-216ENST00000513946 LARP6Q9BRS8 491 aaKnown RBP9.1□□□□□ -0.95
PROM1-216ENST00000513946 POTEEQ6S8J3 1075 aa9.08□□□□□ -0.96
PROM1-216ENST00000513946 SPRYD3Q8NCJ5 442 aa9.08□□□□□ -0.96
PROM1-216ENST00000513946 MMRN1Q13201 1228 aa9.05□□□□□ -0.96
PROM1-216ENST00000513946 DDX27Q96GQ7 796 aaKnown RBP9.05□□□□□ -0.96
PROM1-216ENST00000513946 TBC1D12O60347 775 aa9.04□□□□□ -0.96
PROM1-216ENST00000513946 ANO8Q9HCE9 1232 aaPredicted RBP9.03□□□□□ -0.96
PROM1-216ENST00000513946 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.03□□□□□ -0.96
PROM1-216ENST00000513946 PAXIP1Q6ZW49 1069 aaPredicted RBP9.02□□□□□ -0.97
PROM1-216ENST00000513946 UPF1Q92900 1129 aaKnown RBP eCLIP9.02□□□□□ -0.97
PROM1-216ENST00000513946 EMILIN3Q9NT22 766 aa9.02□□□□□ -0.97
PROM1-216ENST00000513946 CAMK2BQ13554 666 aa8.99□□□□□ -0.97
PROM1-216ENST00000513946 CFAP44Q96MT7 982 aa8.99□□□□□ -0.97
PROM1-216ENST00000513946 PSDA5PKW4 1024 aaPredicted RBP8.97□□□□□ -0.97
PROM1-216ENST00000513946 AXIN2Q9Y2T1 843 aa8.97□□□□□ -0.97
PROM1-216ENST00000513946 EVI5O60447 810 aa8.95□□□□□ -0.98
PROM1-216ENST00000513946 PBX2P40425 430 aa8.95□□□□□ -0.98
PROM1-216ENST00000513946 MAP3K9P80192 1104 aa8.94□□□□□ -0.98
PROM1-216ENST00000513946 LSM11P83369 360 aaKnown RBP eCLIP8.94□□□□□ -0.98
PROM1-216ENST00000513946 ARHGAP33O14559 1287 aa8.93□□□□□ -0.98
PROM1-216ENST00000513946 FOSBP53539 338 aa8.92□□□□□ -0.98
PROM1-216ENST00000513946 ANKRD13DQ6ZTN6 518 aa8.92□□□□□ -0.98
PROM1-216ENST00000513946 PPP4R3BQ5MIZ7 849 aa8.91□□□□□ -0.98
PROM1-216ENST00000513946 PSEN2P49810 448 aa8.9□□□□□ -0.98
PROM1-216ENST00000513946 DMRTA1Q5VZB9 504 aa8.9□□□□□ -0.98
PROM1-216ENST00000513946 ZNF454Q8N9F8 522 aa8.89□□□□□ -0.99
PROM1-216ENST00000513946 DPYSL4O14531 572 aa8.87□□□□□ -0.99
PROM1-216ENST00000513946 JPH4Q96JJ6 628 aa8.87□□□□□ -0.99
PROM1-216ENST00000513946 BCL2L12Q9HB09 334 aa8.87□□□□□ -0.99
PROM1-216ENST00000513946 TSHZ2Q9NRE2 1034 aa8.87□□□□□ -0.99
PROM1-216ENST00000513946 MYT1LQ9UL68 1186 aa8.86□□□□□ -0.99
PROM1-216ENST00000513946 PCDHGA10Q9Y5H3 936 aa8.86□□□□□ -0.99
PROM1-216ENST00000513946 TK2O00142 265 aa8.85□□□□□ -0.99
PROM1-216ENST00000513946 HRO43593 1189 aa8.85□□□□□ -0.99
PROM1-216ENST00000513946 PTGER2P43116 358 aa8.85□□□□□ -0.99
PROM1-216ENST00000513946 ADGRD1Q6QNK2 874 aa8.85□□□□□ -0.99
PROM1-216ENST00000513946 ADAM33Q9BZ11 813 aa8.85□□□□□ -0.99
PROM1-216ENST00000513946 ARIH1Q9Y4X5 557 aaPredicted RBP8.85□□□□□ -0.99
PROM1-216ENST00000513946 ZDHHC16Q969W1 377 aa8.84□□□□□ -0.99
PROM1-216ENST00000513946 E2F4Q16254 413 aa8.83□□□□□ -1
PROM1-216ENST00000513946 RNF166Q96A37 237 aaPredicted RBP8.82□□□□□ -1
PROM1-216ENST00000513946 SLC4A5Q9BY07 1137 aa8.82□□□□□ -1
PROM1-216ENST00000513946 PHF14O94880 888 aa8.81□□□□□ -1
PROM1-216ENST00000513946 KCNK17Q96T54 332 aa8.81□□□□□ -1
PROM1-216ENST00000513946 VPS9D1Q9Y2B5 631 aa8.8□□□□□ -1
PROM1-216ENST00000513946 PTPREP23469 700 aa8.79□□□□□ -1
PROM1-216ENST00000513946 PDIA6Q15084 440 aa8.79□□□□□ -1
PROM1-216ENST00000513946 WDR70Q9NW82 654 aa8.79□□□□□ -1
PROM1-216ENST00000513946 BHMG1C9JSJ3 638 aaPredicted RBP8.78□□□□□ -1
PROM1-216ENST00000513946 TYW1BQ6NUM6 668 aa8.78□□□□□ -1
PROM1-216ENST00000513946 ZBED2Q9BTP6 218 aa8.78□□□□□ -1
PROM1-216ENST00000513946 SPDYE16A6NNV3 312 aaPredicted RBP8.77□□□□□ -1.01
PROM1-216ENST00000513946 EPAS1Q99814 870 aa8.76□□□□□ -1.01
PROM1-216ENST00000513946 COL9A1P20849 921 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms