RNA–Protein interactions for RNA: ENST00000513664.1

PDGFC-209, Transcript of platelet derived growth factor C, humanhuman

TSL 3

Gene PDGFC, Length 597 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-209ENST00000513664 AKNAQ7Z591 1439 aa14.78□□□□□ -0.04
PDGFC-209ENST00000513664 CDC42BPAQ5VT25 1732 aa14.78□□□□□ -0.04
PDGFC-209ENST00000513664 ITSN2Q9NZM3 1697 aa14.77□□□□□ -0.04
PDGFC-209ENST00000513664 GPATCH8Q9UKJ3 1502 aaKnown RBP14.77□□□□□ -0.04
PDGFC-209ENST00000513664 NCOA2Q15596 1464 aa14.77□□□□□ -0.04
PDGFC-209ENST00000513664 CDC42BPBQ9Y5S2 1711 aa14.76□□□□□ -0.05
PDGFC-209ENST00000513664 KANK4Q5T7N3 995 aaPredicted RBP14.76□□□□□ -0.05
PDGFC-209ENST00000513664 CFDP1Q9UEE9 299 aaPredicted RBP14.75□□□□□ -0.05
PDGFC-209ENST00000513664 ADGRL1O94910 1474 aa14.75□□□□□ -0.05
PDGFC-209ENST00000513664 DENND4BO75064 1496 aaPredicted RBP14.74□□□□□ -0.05
PDGFC-209ENST00000513664 PLEKHH2Q8IVE3 1493 aa14.73□□□□□ -0.05
PDGFC-209ENST00000513664 COL17A1Q9UMD9 1497 aaPredicted RBP14.73□□□□□ -0.05
PDGFC-209ENST00000513664 SCAPERQ9BY12 1400 aa14.71□□□□□ -0.05
PDGFC-209ENST00000513664 ABCC1P33527 1531 aa14.7□□□□□ -0.06
PDGFC-209ENST00000513664 ZNF518AQ6AHZ1 1483 aa14.69□□□□□ -0.06
PDGFC-209ENST00000513664 POGZQ7Z3K3 1410 aa14.69□□□□□ -0.06
PDGFC-209ENST00000513664 MIA2Q96PC5 1412 aa14.69□□□□□ -0.06
PDGFC-209ENST00000513664 KIAA1107Q9UPP5 1409 aa14.69□□□□□ -0.06
PDGFC-209ENST00000513664 ZNF777Q9ULD5 760 aaPredicted RBP14.69□□□□□ -0.06
PDGFC-209ENST00000513664 RICTORQ6R327 1708 aa14.69□□□□□ -0.06
PDGFC-209ENST00000513664 MYOM3Q5VTT5 1437 aa14.68□□□□□ -0.06
PDGFC-209ENST00000513664 RAPGEF3O95398 923 aa14.68□□□□□ -0.06
PDGFC-209ENST00000513664 SAMD9LQ8IVG5 1584 aa14.68□□□□□ -0.06
PDGFC-209ENST00000513664 MAGI2Q86UL8 1455 aa14.67□□□□□ -0.06
PDGFC-209ENST00000513664 ZMYM4Q5VZL5 1548 aa14.66□□□□□ -0.06
PDGFC-209ENST00000513664 FRMPD1Q5SYB0 1578 aa14.66□□□□□ -0.06
PDGFC-209ENST00000513664 RSPH4AQ5TD94 716 aa14.65□□□□□ -0.06
PDGFC-209ENST00000513664 SYCP2Q9BX26 1530 aa14.64□□□□□ -0.07
PDGFC-209ENST00000513664 KDM5CP41229 1560 aa14.64□□□□□ -0.07
PDGFC-209ENST00000513664 CAMSAP2Q08AD1 1489 aa14.63□□□□□ -0.07
PDGFC-209ENST00000513664 ARHGEF12Q9NZN5 1544 aa14.62□□□□□ -0.07
PDGFC-209ENST00000513664 FGD6Q6ZV73 1430 aa14.61□□□□□ -0.07
PDGFC-209ENST00000513664 TRAPPC8Q9Y2L5 1435 aa14.61□□□□□ -0.07
PDGFC-209ENST00000513664 HNRNPMP52272 730 aaKnown RBP eCLIP14.61□□□□□ -0.07
PDGFC-209ENST00000513664 AFAP1Q8N556 730 aa14.61□□□□□ -0.07
PDGFC-209ENST00000513664 MLH3Q9UHC1 1453 aa14.61□□□□□ -0.07
PDGFC-209ENST00000513664 ZFYVE16Q7Z3T8 1539 aa14.61□□□□□ -0.07
PDGFC-209ENST00000513664 MBD5Q9P267 1494 aa14.6□□□□□ -0.07
PDGFC-209ENST00000513664 ARHGEF40Q8TER5 1519 aa14.6□□□□□ -0.07
PDGFC-209ENST00000513664 ZNF644Q9H582 1327 aaPredicted RBP14.6□□□□□ -0.07
PDGFC-209ENST00000513664 ARHGEF5Q12774 1597 aa14.6□□□□□ -0.07
PDGFC-209ENST00000513664 HECW2Q9P2P5 1572 aa14.6□□□□□ -0.07
PDGFC-209ENST00000513664 CCDC141Q6ZP82 1450 aa14.59□□□□□ -0.07
PDGFC-209ENST00000513664 PTPN23Q9H3S7 1636 aa14.59□□□□□ -0.07
PDGFC-209ENST00000513664 MYT1LQ9UL68 1186 aa14.58□□□□□ -0.08
PDGFC-209ENST00000513664 SPAG9O60271 1321 aaKnown RBP14.58□□□□□ -0.08
PDGFC-209ENST00000513664 TCOF1Q13428 1488 aaKnown RBP14.57□□□□□ -0.08
PDGFC-209ENST00000513664 TSPY4P0CV99 314 aa14.56□□□□□ -0.08
PDGFC-209ENST00000513664 TSPY10P0CW01 314 aa14.56□□□□□ -0.08
PDGFC-209ENST00000513664 RTEL1-TNFRSF6BF6WH68 1400 aa14.56□□□□□ -0.08
PDGFC-209ENST00000513664 ATP10AO60312 1499 aa14.56□□□□□ -0.08
PDGFC-209ENST00000513664 YEATS2Q9ULM3 1422 aa14.54□□□□□ -0.08
PDGFC-209ENST00000513664 ATP7AQ04656 1500 aa14.54□□□□□ -0.08
PDGFC-209ENST00000513664 INO80Q9ULG1 1556 aaPredicted RBP14.54□□□□□ -0.08
PDGFC-209ENST00000513664 KIDINS220Q9ULH0 1771 aa14.53□□□□□ -0.08
PDGFC-209ENST00000513664 REREQ9P2R6 1566 aa14.53□□□□□ -0.08
PDGFC-209ENST00000513664 C9orf84Q5VXU9 1444 aa14.53□□□□□ -0.08
PDGFC-209ENST00000513664 PPARGC1BQ86YN6 1023 aaKnown RBP14.53□□□□□ -0.08
PDGFC-209ENST00000513664 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.52□□□□□ -0.08
PDGFC-209ENST00000513664 DIP2CQ9Y2E4 1556 aa14.51□□□□□ -0.09
PDGFC-209ENST00000513664 MAST1Q9Y2H9 1570 aa14.51□□□□□ -0.09
PDGFC-209ENST00000513664 DNMT1P26358 1616 aaKnown RBP14.51□□□□□ -0.09
PDGFC-209ENST00000513664 SHANK2Q9UPX8 1470 aa14.5□□□□□ -0.09
PDGFC-209ENST00000513664 FAM50AQ14320 339 aaKnown RBP14.5□□□□□ -0.09
PDGFC-209ENST00000513664 ABCA6Q8N139 1617 aa14.5□□□□□ -0.09
PDGFC-209ENST00000513664 ABCC5O15440 1437 aa14.49□□□□□ -0.09
PDGFC-209ENST00000513664 DAPK1P53355 1430 aa14.49□□□□□ -0.09
PDGFC-209ENST00000513664 ADGBQ8N7X0 1667 aa14.49□□□□□ -0.09
PDGFC-209ENST00000513664 ARID4BQ4LE39 1312 aaPredicted RBP14.48□□□□□ -0.09
PDGFC-209ENST00000513664 CROCC2H7BZ55 1655 aa14.48□□□□□ -0.09
PDGFC-209ENST00000513664 RRBP1Q9P2E9 1410 aaKnown RBP14.48□□□□□ -0.09
PDGFC-209ENST00000513664 AGLP35573 1532 aa14.46□□□□□ -0.09
PDGFC-209ENST00000513664 A2MP01023 1474 aa14.46□□□□□ -0.09
PDGFC-209ENST00000513664 PLXNC1O60486 1568 aa14.46□□□□□ -0.09
PDGFC-209ENST00000513664 DHX29Q7Z478 1369 aaKnown RBP14.44□□□□□ -0.1
PDGFC-209ENST00000513664 ANKRD30AQ9BXX3 1397 aa14.44□□□□□ -0.1
PDGFC-209ENST00000513664 BCORL1Q5H9F3 1711 aa14.43□□□□□ -0.1
PDGFC-209ENST00000513664 DUOX2Q9NRD8 1548 aa14.41□□□□□ -0.1
PDGFC-209ENST00000513664 ADGRL2O95490 1459 aa14.41□□□□□ -0.1
PDGFC-209ENST00000513664 KIF15Q9NS87 1388 aa14.4□□□□□ -0.1
PDGFC-209ENST00000513664 SIGLEC1Q9BZZ2 1709 aa14.4□□□□□ -0.1
PDGFC-209ENST00000513664 NCOA1Q15788 1441 aa14.4□□□□□ -0.1
PDGFC-209ENST00000513664 ADAMTSL3P82987 1691 aa14.39□□□□□ -0.11
PDGFC-209ENST00000513664 ROCK1Q13464 1354 aa14.39□□□□□ -0.11
PDGFC-209ENST00000513664 KDM4FA0A1W2PPD8 638 aa14.39□□□□□ -0.11
PDGFC-209ENST00000513664 PPP6R1Q9UPN7 881 aa14.39□□□□□ -0.11
PDGFC-209ENST00000513664 EIF2AK4Q9P2K8 1649 aaKnown RBP14.38□□□□□ -0.11
PDGFC-209ENST00000513664 ERBINQ96RT1 1412 aa14.38□□□□□ -0.11
PDGFC-209ENST00000513664 ESF1Q9H501 851 aaKnown RBP14.37□□□□□ -0.11
PDGFC-209ENST00000513664 RRP7BPQ9NSQ0 103 aa14.37□□□□□ -0.11
PDGFC-209ENST00000513664 CHIC2Q9UKJ5 165 aa14.37□□□□□ -0.11
PDGFC-209ENST00000513664 MLECQ14165 292 aa14.36□□□□□ -0.11
PDGFC-209ENST00000513664 FAM135AQ9P2D6 1515 aa14.36□□□□□ -0.11
PDGFC-209ENST00000513664 CNTLNQ9NXG0 1405 aa14.35□□□□□ -0.11
PDGFC-209ENST00000513664 ITGAEP38570 1179 aa14.35□□□□□ -0.11
PDGFC-209ENST00000513664 MADDQ8WXG6 1647 aa14.34□□□□□ -0.11
PDGFC-209ENST00000513664 PTPRKQ15262 1439 aa14.34□□□□□ -0.11
PDGFC-209ENST00000513664 KIF3BO15066 747 aa14.34□□□□□ -0.11
PDGFC-209ENST00000513664 FER1L4A9Z1Z3 1794 aa14.34□□□□□ -0.11
PDGFC-209ENST00000513664 AEBP2Q6ZN18 517 aaPredicted RBP14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms