RNA–Protein interactions for RNA: ENST00000510737.1

USP53-206, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 5

Gene USP53, Length 534 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-206ENST00000510737 DOK7Q18PE1 504 aa20.32■□□□□ 0.84
USP53-206ENST00000510737 HOXB1P14653 301 aaPredicted RBP20.29■□□□□ 0.84
USP53-206ENST00000510737 FAM205CA6NFA0 338 aa20.28■□□□□ 0.84
USP53-206ENST00000510737 CHGAP10645 457 aaKnown RBP20.28■□□□□ 0.84
USP53-206ENST00000510737 ZNF710Q8N1W2 664 aa20.28■□□□□ 0.84
USP53-206ENST00000510737 HS3ST6Q96QI5 342 aa20.27■□□□□ 0.84
USP53-206ENST00000510737 KIF3CO14782 793 aa20.26■□□□□ 0.83
USP53-206ENST00000510737 C2orf72A6NCS6 295 aa20.22■□□□□ 0.83
USP53-206ENST00000510737 NKX1-1Q15270 411 aaPredicted RBP20.22■□□□□ 0.83
USP53-206ENST00000510737 GPR153Q6NV75 609 aa20.18■□□□□ 0.82
USP53-206ENST00000510737 RIMBP2O15034 1052 aa20.14■□□□□ 0.81
USP53-206ENST00000510737 KRTAP3-3Q9BYR6 98 aa20.14■□□□□ 0.81
USP53-206ENST00000510737 KRTAP3-2Q9BYR7 98 aa20.14■□□□□ 0.81
USP53-206ENST00000510737 DNAJC5Q9H3Z4 198 aa20.14■□□□□ 0.81
USP53-206ENST00000510737 ZSWIM6Q9HCJ5 1215 aa20.13■□□□□ 0.81
USP53-206ENST00000510737 ARSIQ5FYB1 569 aa20.09■□□□□ 0.81
USP53-206ENST00000510737 KHSRPQ92945 711 aaKnown RBP eCLIP20.09■□□□□ 0.81
USP53-206ENST00000510737 ERBB3P21860 1342 aa20.06■□□□□ 0.8
USP53-206ENST00000510737 SPNS2Q8IVW8 549 aa20.05■□□□□ 0.8
USP53-206ENST00000510737 VARS2Q5ST30 1063 aaKnown RBP20.02■□□□□ 0.8
USP53-206ENST00000510737 TMC2Q8TDI7 906 aa20.02■□□□□ 0.8
USP53-206ENST00000510737 MMRN1Q13201 1228 aa19.93■□□□□ 0.78
USP53-206ENST00000510737 SLC34A2O95436 690 aa19.92■□□□□ 0.78
USP53-206ENST00000510737 PCDHGA4Q9Y5G9 962 aa19.89■□□□□ 0.77
USP53-206ENST00000510737 GPHNQ9NQX3 736 aaPredicted RBP19.88■□□□□ 0.77
USP53-206ENST00000510737 GTPBP6O43824 516 aaPredicted RBP19.87■□□□□ 0.77
USP53-206ENST00000510737 NUDT7P0C024 238 aa19.87■□□□□ 0.77
USP53-206ENST00000510737 ZNF316A6NFI3 1004 aaPredicted RBP19.86■□□□□ 0.77
USP53-206ENST00000510737 DCAF8L2P0C7V8 631 aa19.86■□□□□ 0.77
USP53-206ENST00000510737 FOXK1P85037 733 aa19.85■□□□□ 0.77
USP53-206ENST00000510737 ZNF687Q8N1G0 1237 aa19.85■□□□□ 0.77
USP53-206ENST00000510737 DSG2Q14126 1118 aa19.84■□□□□ 0.77
USP53-206ENST00000510737 PLPP6Q8IY26 295 aa19.82■□□□□ 0.76
USP53-206ENST00000510737 RYDENQ9NUL5 291 aaKnown RBP19.79■□□□□ 0.76
USP53-206ENST00000510737 LHX6Q9UPM6 363 aa19.77■□□□□ 0.76
USP53-206ENST00000510737 KDM4FA0A1W2PPD8 638 aa19.75■□□□□ 0.75
USP53-206ENST00000510737 CRISPLD2Q9H0B8 497 aa19.75■□□□□ 0.75
USP53-206ENST00000510737 PTCD2Q8WV60 388 aaKnown RBP19.74■□□□□ 0.75
USP53-206ENST00000510737 NCKAP5LQ9HCH0 1330 aa19.73■□□□□ 0.75
USP53-206ENST00000510737 POTEEQ6S8J3 1075 aa19.67■□□□□ 0.74
USP53-206ENST00000510737 PPP1R15BQ5SWA1 713 aa19.6■□□□□ 0.73
USP53-206ENST00000510737 OXER1Q8TDS5 423 aa19.58■□□□□ 0.72
USP53-206ENST00000510737 CADPS2Q86UW7 1296 aa19.57■□□□□ 0.72
USP53-206ENST00000510737 AXIN2Q9Y2T1 843 aa19.57■□□□□ 0.72
USP53-206ENST00000510737 RTN4Q9NQC3 1192 aaKnown RBP19.56■□□□□ 0.72
USP53-206ENST00000510737 PDE4AP27815 886 aa19.55■□□□□ 0.72
USP53-206ENST00000510737 UPF1Q92900 1129 aaKnown RBP eCLIP19.55■□□□□ 0.72
USP53-206ENST00000510737 LSM11P83369 360 aaKnown RBP eCLIP19.53■□□□□ 0.72
USP53-206ENST00000510737 ANKRD13DQ6ZTN6 518 aa19.53■□□□□ 0.72
USP53-206ENST00000510737 LARP6Q9BRS8 491 aaKnown RBP19.51■□□□□ 0.71
USP53-206ENST00000510737 TBC1D12O60347 775 aa19.48■□□□□ 0.71
USP53-206ENST00000510737 PBX2P40425 430 aa19.48■□□□□ 0.71
USP53-206ENST00000510737 AMER1Q5JTC6 1135 aaPredicted RBP19.48■□□□□ 0.71
USP53-206ENST00000510737 MFSD10Q14728 455 aa19.47■□□□□ 0.71
USP53-206ENST00000510737 DDX27Q96GQ7 796 aaKnown RBP19.44■□□□□ 0.7
USP53-206ENST00000510737 MYT1LQ9UL68 1186 aa19.44■□□□□ 0.7
USP53-206ENST00000510737 PSDA5PKW4 1024 aaPredicted RBP19.43■□□□□ 0.7
USP53-206ENST00000510737 BBXQ8WY36 941 aaPredicted RBP19.43■□□□□ 0.7
USP53-206ENST00000510737 RNF166Q96A37 237 aaPredicted RBP19.43■□□□□ 0.7
USP53-206ENST00000510737 ARHGAP33O14559 1287 aa19.38■□□□□ 0.69
USP53-206ENST00000510737 PSEN2P49810 448 aa19.37■□□□□ 0.69
USP53-206ENST00000510737 EMILIN3Q9NT22 766 aa19.37■□□□□ 0.69
USP53-206ENST00000510737 DMRTA1Q5VZB9 504 aa19.36■□□□□ 0.69
USP53-206ENST00000510737 PPP4R3BQ5MIZ7 849 aa19.34■□□□□ 0.69
USP53-206ENST00000510737 PTGER2P43116 358 aa19.32■□□□□ 0.68
USP53-206ENST00000510737 ANO8Q9HCE9 1232 aaPredicted RBP19.31■□□□□ 0.68
USP53-206ENST00000510737 EVI5O60447 810 aa19.28■□□□□ 0.68
USP53-206ENST00000510737 ADGRD1Q6QNK2 874 aa19.28■□□□□ 0.68
USP53-206ENST00000510737 ZNF454Q8N9F8 522 aa19.27■□□□□ 0.68
USP53-206ENST00000510737 FOSBP53539 338 aa19.26■□□□□ 0.67
USP53-206ENST00000510737 KCNK17Q96T54 332 aa19.23■□□□□ 0.67
USP53-206ENST00000510737 MAP3K9P80192 1104 aa19.21■□□□□ 0.67
USP53-206ENST00000510737 HRO43593 1189 aa19.2■□□□□ 0.66
USP53-206ENST00000510737 SPRYD3Q8NCJ5 442 aa19.2■□□□□ 0.66
USP53-206ENST00000510737 TK2O00142 265 aa19.18■□□□□ 0.66
USP53-206ENST00000510737 CAMK2BQ13554 666 aa19.18■□□□□ 0.66
USP53-206ENST00000510737 JPH4Q96JJ6 628 aa19.17■□□□□ 0.66
USP53-206ENST00000510737 BCL2L12Q9HB09 334 aa19.17■□□□□ 0.66
USP53-206ENST00000510737 ADAM33Q9BZ11 813 aa19.13■□□□□ 0.65
USP53-206ENST00000510737 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.13■□□□□ 0.65
USP53-206ENST00000510737 PAXIP1Q6ZW49 1069 aaPredicted RBP19.1■□□□□ 0.65
USP53-206ENST00000510737 ZDHHC16Q969W1 377 aa19.08■□□□□ 0.64
USP53-206ENST00000510737 CFAP44Q96MT7 982 aa19.08■□□□□ 0.64
USP53-206ENST00000510737 VPS9D1Q9Y2B5 631 aa19.08■□□□□ 0.64
USP53-206ENST00000510737 PCDHGA10Q9Y5H3 936 aa19.08■□□□□ 0.64
USP53-206ENST00000510737 DPYSL4O14531 572 aa19.07■□□□□ 0.64
USP53-206ENST00000510737 PTPREP23469 700 aa19.04■□□□□ 0.64
USP53-206ENST00000510737 KCNH8Q96L42 1107 aa19.02■□□□□ 0.64
USP53-206ENST00000510737 ZBED2Q9BTP6 218 aa19.01■□□□□ 0.63
USP53-206ENST00000510737 SLC4A5Q9BY07 1137 aa19■□□□□ 0.63
USP53-206ENST00000510737 PHF14O94880 888 aa18.95■□□□□ 0.62
USP53-206ENST00000510737 BHMG1C9JSJ3 638 aaPredicted RBP18.94■□□□□ 0.62
USP53-206ENST00000510737 COL9A1P20849 921 aa18.93■□□□□ 0.62
USP53-206ENST00000510737 TYW1BQ6NUM6 668 aa18.91■□□□□ 0.62
USP53-206ENST00000510737 KCTD12Q96CX2 325 aaKnown RBP18.91■□□□□ 0.62
USP53-206ENST00000510737 HCSTQ9UBK5 93 aa18.89■□□□□ 0.61
USP53-206ENST00000510737 FBXW7Q969H0 707 aa18.87■□□□□ 0.61
USP53-206ENST00000510737 PPP1R3GB7ZBB8 358 aa18.86■□□□□ 0.61
USP53-206ENST00000510737 DDX12PQ92771 950 aa18.86■□□□□ 0.61
USP53-206ENST00000510737 PROX2Q3B8N5 592 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms