RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 LOC105371045A0A1W2PR82 267 aa28.9■■■□□ 2.22
TPM3-220ENST00000509601 YEATS2Q9ULM3 1422 aa28.9■■■□□ 2.22
TPM3-220ENST00000509601 MAGI2Q86UL8 1455 aa28.89■■■□□ 2.22
TPM3-220ENST00000509601 ARHGAP5Q13017 1502 aa28.88■■■□□ 2.21
TPM3-220ENST00000509601 ARHGEF40Q8TER5 1519 aa28.88■■■□□ 2.21
TPM3-220ENST00000509601 CEP162Q5TB80 1403 aa28.87■■■□□ 2.21
TPM3-220ENST00000509601 ADAMTSL3P82987 1691 aa28.87■■■□□ 2.21
TPM3-220ENST00000509601 AFAP1Q8N556 730 aa28.86■■■□□ 2.21
TPM3-220ENST00000509601 CDC42BPBQ9Y5S2 1711 aa28.85■■■□□ 2.21
TPM3-220ENST00000509601 ZFYVE16Q7Z3T8 1539 aa28.84■■■□□ 2.21
TPM3-220ENST00000509601 BCORL1Q5H9F3 1711 aa28.82■■■□□ 2.2
TPM3-220ENST00000509601 PTPRMP28827 1452 aa28.79■■■□□ 2.2
TPM3-220ENST00000509601 ARHGEF12Q9NZN5 1544 aa28.78■■■□□ 2.2
TPM3-220ENST00000509601 ZNF518AQ6AHZ1 1483 aa28.77■■■□□ 2.2
TPM3-220ENST00000509601 SIGLEC1Q9BZZ2 1709 aa28.77■■■□□ 2.2
TPM3-220ENST00000509601 PREX2Q70Z35 1606 aa28.76■■■□□ 2.2
TPM3-220ENST00000509601 ATP10AO60312 1499 aa28.76■■■□□ 2.19
TPM3-220ENST00000509601 GPATCH8Q9UKJ3 1502 aaKnown RBP28.74■■■□□ 2.19
TPM3-220ENST00000509601 TRAPPC8Q9Y2L5 1435 aa28.74■■■□□ 2.19
TPM3-220ENST00000509601 CDC42BPAQ5VT25 1732 aa28.74■■■□□ 2.19
TPM3-220ENST00000509601 MADDQ8WXG6 1647 aa28.72■■■□□ 2.19
TPM3-220ENST00000509601 KDM5CP41229 1560 aa28.72■■■□□ 2.19
TPM3-220ENST00000509601 HECW2Q9P2P5 1572 aa28.71■■■□□ 2.19
TPM3-220ENST00000509601 ZNF777Q9ULD5 760 aaPredicted RBP28.71■■■□□ 2.19
TPM3-220ENST00000509601 MTUS2Q5JR59 1369 aa28.71■■■□□ 2.19
TPM3-220ENST00000509601 MLECQ14165 292 aa28.7■■■□□ 2.18
TPM3-220ENST00000509601 ABCC1P33527 1531 aa28.69■■■□□ 2.18
TPM3-220ENST00000509601 C9orf84Q5VXU9 1444 aa28.68■■■□□ 2.18
TPM3-220ENST00000509601 MLH3Q9UHC1 1453 aa28.67■■■□□ 2.18
TPM3-220ENST00000509601 MYT1LQ9UL68 1186 aa28.67■■■□□ 2.18
TPM3-220ENST00000509601 CFDP1Q9UEE9 299 aaPredicted RBP28.66■■■□□ 2.18
TPM3-220ENST00000509601 CCNB3Q8WWL7 1395 aa28.65■■■□□ 2.18
TPM3-220ENST00000509601 HNRNPMP52272 730 aaKnown RBP eCLIP28.65■■■□□ 2.187e-7■■■□□ 16.5
TPM3-220ENST00000509601 ITSN2Q9NZM3 1697 aa28.62■■■□□ 2.17
TPM3-220ENST00000509601 SAMD9LQ8IVG5 1584 aa28.62■■■□□ 2.17
TPM3-220ENST00000509601 RIMS1Q86UR5 1692 aaKnown RBP28.61■■■□□ 2.17
TPM3-220ENST00000509601 DIP2CQ9Y2E4 1556 aa28.58■■■□□ 2.17
TPM3-220ENST00000509601 KIAA1107Q9UPP5 1409 aa28.58■■■□□ 2.17
TPM3-220ENST00000509601 EHBP1L1Q8N3D4 1523 aa28.57■■■□□ 2.16
TPM3-220ENST00000509601 PLPPR3Q6T4P5 718 aa28.56■■■□□ 2.16
TPM3-220ENST00000509601 ZNF644Q9H582 1327 aaPredicted RBP28.56■■■□□ 2.16
TPM3-220ENST00000509601 VPS8Q8N3P4 1428 aa28.55■■■□□ 2.16
TPM3-220ENST00000509601 ABCA6Q8N139 1617 aa28.54■■■□□ 2.16
TPM3-220ENST00000509601 KIDINS220Q9ULH0 1771 aa28.54■■■□□ 2.16
TPM3-220ENST00000509601 SYCP2Q9BX26 1530 aa28.53■■■□□ 2.16
TPM3-220ENST00000509601 REREQ9P2R6 1566 aa28.53■■■□□ 2.16
TPM3-220ENST00000509601 SPAG9O60271 1321 aaKnown RBP28.52■■■□□ 2.16
TPM3-220ENST00000509601 PLEKHH2Q8IVE3 1493 aa28.52■■■□□ 2.16
TPM3-220ENST00000509601 TIAM1Q13009 1591 aa28.51■■■□□ 2.15
TPM3-220ENST00000509601 FER1L4A9Z1Z3 1794 aa28.48■■■□□ 2.15
TPM3-220ENST00000509601 CEBPAP49715 358 aaPredicted RBP28.48■■■□□ 2.15
TPM3-220ENST00000509601 AGLP35573 1532 aa28.48■■■□□ 2.15
TPM3-220ENST00000509601 NCOA2Q15596 1464 aa28.47■■■□□ 2.15
TPM3-220ENST00000509601 LMTK3Q96Q04 1460 aa28.46■■■□□ 2.15
TPM3-220ENST00000509601 MBD5Q9P267 1494 aa28.45■■■□□ 2.14
TPM3-220ENST00000509601 KANK4Q5T7N3 995 aaPredicted RBP28.44■■■□□ 2.14
TPM3-220ENST00000509601 LRRC9Q6ZRR7 1453 aa28.41■■■□□ 2.14
TPM3-220ENST00000509601 SUPT6HQ7KZ85 1726 aaKnown RBP28.4■■■□□ 2.14
TPM3-220ENST00000509601 HSPA2P54652 639 aa28.39■■■□□ 2.14
TPM3-220ENST00000509601 ATP7AQ04656 1500 aa28.38■■■□□ 2.13
TPM3-220ENST00000509601 MAP3K1Q13233 1512 aa28.37■■■□□ 2.13
TPM3-220ENST00000509601 INO80Q9ULG1 1556 aaPredicted RBP28.35■■■□□ 2.13
TPM3-220ENST00000509601 RSPH4AQ5TD94 716 aa28.33■■■□□ 2.13
TPM3-220ENST00000509601 ESF1Q9H501 851 aaKnown RBP28.33■■■□□ 2.13
TPM3-220ENST00000509601 A2MP01023 1474 aa28.33■■■□□ 2.13
TPM3-220ENST00000509601 RTEL1-TNFRSF6BF6WH68 1400 aa28.32■■■□□ 2.12
TPM3-220ENST00000509601 CAMSAP2Q08AD1 1489 aa28.29■■■□□ 2.12
TPM3-220ENST00000509601 SETD1BQ9UPS6 1966 aaKnown RBP28.29■■■□□ 2.12
TPM3-220ENST00000509601 PLXNC1O60486 1568 aa28.28■■■□□ 2.12
TPM3-220ENST00000509601 ILDR1Q86SU0 546 aaPredicted RBP28.26■■■□□ 2.11
TPM3-220ENST00000509601 CNTLNQ9NXG0 1405 aa28.26■■■□□ 2.11
TPM3-220ENST00000509601 GGT6Q6P531 493 aa28.25■■■□□ 2.11
TPM3-220ENST00000509601 CCDC141Q6ZP82 1450 aa28.25■■■□□ 2.11
TPM3-220ENST00000509601 DHX29Q7Z478 1369 aaKnown RBP28.24■■■□□ 2.11
TPM3-220ENST00000509601 C3P01024 1663 aa28.24■■■□□ 2.11
TPM3-220ENST00000509601 ZMYM3Q14202 1370 aa28.23■■■□□ 2.11
TPM3-220ENST00000509601 APLP2Q06481 763 aa28.21■■■□□ 2.11
TPM3-220ENST00000509601 ADGBQ8N7X0 1667 aa28.2■■■□□ 2.11
TPM3-220ENST00000509601 TSPY4P0CV99 314 aa28.2■■■□□ 2.1
TPM3-220ENST00000509601 TSPY10P0CW01 314 aa28.2■■■□□ 2.1
TPM3-220ENST00000509601 PPP6R1Q9UPN7 881 aa28.2■■■□□ 2.1
TPM3-220ENST00000509601 PREX1Q8TCU6 1659 aa28.19■■■□□ 2.1
TPM3-220ENST00000509601 ARHGEF5Q12774 1597 aa28.18■■■□□ 2.1
TPM3-220ENST00000509601 MYOM3Q5VTT5 1437 aa28.18■■■□□ 2.1
TPM3-220ENST00000509601 MIA2Q96PC5 1412 aa28.18■■■□□ 2.1
TPM3-220ENST00000509601 UHRF1BP1Q6BDS2 1440 aa28.17■■■□□ 2.1
TPM3-220ENST00000509601 KIF3BO15066 747 aa28.14■■■□□ 2.1
TPM3-220ENST00000509601 MROH2AA6NES4 1674 aa28.12■■■□□ 2.09
TPM3-220ENST00000509601 CLTCQ00610 1675 aaKnown RBP28.1■■■□□ 2.09
TPM3-220ENST00000509601 NPATQ14207 1427 aa28.09■■■□□ 2.09
TPM3-220ENST00000509601 PTPRKQ15262 1439 aa28.06■■■□□ 2.08
TPM3-220ENST00000509601 STRCQ7RTU9 1775 aa28.04■■■□□ 2.08
TPM3-220ENST00000509601 MAST1Q9Y2H9 1570 aa28.03■■■□□ 2.08
TPM3-220ENST00000509601 DMRT2Q9Y5R5 561 aa28.02■■■□□ 2.08
TPM3-220ENST00000509601 WASHC2CQ9Y4E1 1318 aa27.99■■■□□ 2.07
TPM3-220ENST00000509601 ABCC5O15440 1437 aa27.99■■■□□ 2.07
TPM3-220ENST00000509601 FBXO41Q8TF61 875 aa27.98■■■□□ 2.07
TPM3-220ENST00000509601 FBXO31Q5XUX0 539 aaPredicted RBP27.97■■■□□ 2.07
TPM3-220ENST00000509601 FGD6Q6ZV73 1430 aa27.97■■■□□ 2.07
TPM3-220ENST00000509601 PTPN23Q9H3S7 1636 aa27.96■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 139.4 ms