RNA–Protein interactions for RNA: ENST00000509429.1

NIPBL-206, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 3

Gene NIPBL, Length 586 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-206ENST00000509429 AXIN2Q9Y2T1 843 aa12.99□□□□□ -0.33
NIPBL-206ENST00000509429 ADGRD1Q6QNK2 874 aa12.95□□□□□ -0.34
NIPBL-206ENST00000509429 KLHL34Q8N239 644 aa12.94□□□□□ -0.34
NIPBL-206ENST00000509429 EFCAB3Q8N7B9 438 aa12.94□□□□□ -0.34
NIPBL-206ENST00000509429 IFFO2Q5TF58 517 aa12.86□□□□□ -0.35
NIPBL-206ENST00000509429 NUDT7P0C024 238 aa12.85□□□□□ -0.35
NIPBL-206ENST00000509429 LHX6Q9UPM6 363 aa12.85□□□□□ -0.35
NIPBL-206ENST00000509429 ARHGAP33O14559 1287 aa12.84□□□□□ -0.35
NIPBL-206ENST00000509429 FBXO3Q9UK99 471 aa12.84□□□□□ -0.35
NIPBL-206ENST00000509429 TK2O00142 265 aa12.82□□□□□ -0.36
NIPBL-206ENST00000509429 KCTD12Q96CX2 325 aaKnown RBP12.82□□□□□ -0.36
NIPBL-206ENST00000509429 HRO43593 1189 aa12.81□□□□□ -0.36
NIPBL-206ENST00000509429 A0A0G2JS52 829 aa12.76□□□□□ -0.37
NIPBL-206ENST00000509429 SOX12O15370 315 aa12.76□□□□□ -0.37
NIPBL-206ENST00000509429 MS4A4AQ96JQ5 239 aa12.75□□□□□ -0.37
NIPBL-206ENST00000509429 Q6ZNB5 142 aa12.74□□□□□ -0.37
NIPBL-206ENST00000509429 STAC3Q96MF2 364 aa12.72□□□□□ -0.37
NIPBL-206ENST00000509429 CIZ1Q9ULV3 898 aaPredicted RBP12.7□□□□□ -0.38
NIPBL-206ENST00000509429 PCDHGA4Q9Y5G9 962 aa12.7□□□□□ -0.38
NIPBL-206ENST00000509429 PSDA5PKW4 1024 aaPredicted RBP12.69□□□□□ -0.38
NIPBL-206ENST00000509429 PTPN5P54829 565 aa12.68□□□□□ -0.38
NIPBL-206ENST00000509429 FKBP8Q14318 412 aa12.68□□□□□ -0.38
NIPBL-206ENST00000509429 DMRTA1Q5VZB9 504 aa12.68□□□□□ -0.38
NIPBL-206ENST00000509429 VASPP50552 380 aaPredicted RBP12.67□□□□□ -0.38
NIPBL-206ENST00000509429 SLC34A2O95436 690 aa12.66□□□□□ -0.38
NIPBL-206ENST00000509429 PHF8Q9UPP1 1060 aa12.64□□□□□ -0.39
NIPBL-206ENST00000509429 PSEN2P49810 448 aa12.63□□□□□ -0.39
NIPBL-206ENST00000509429 KIF3CO14782 793 aa12.62□□□□□ -0.39
NIPBL-206ENST00000509429 C2orf72A6NCS6 295 aa12.58□□□□□ -0.4
NIPBL-206ENST00000509429 SPOCK2Q92563 424 aa12.55□□□□□ -0.4
NIPBL-206ENST00000509429 THSD4Q6ZMP0 1018 aa12.49□□□□□ -0.41
NIPBL-206ENST00000509429 TRIM41Q8WV44 630 aa12.48□□□□□ -0.41
NIPBL-206ENST00000509429 KDM4FA0A1W2PPD8 638 aa12.47□□□□□ -0.41
NIPBL-206ENST00000509429 NLRP6P59044 892 aa12.47□□□□□ -0.41
NIPBL-206ENST00000509429 LAPTM4AQ15012 233 aa12.46□□□□□ -0.41
NIPBL-206ENST00000509429 PPP4R3BQ5MIZ7 849 aa12.46□□□□□ -0.41
NIPBL-206ENST00000509429 VPS9D1Q9Y2B5 631 aa12.46□□□□□ -0.41
NIPBL-206ENST00000509429 LCE2BO14633 110 aa12.44□□□□□ -0.42
NIPBL-206ENST00000509429 TRAF7Q6Q0C0 670 aa12.44□□□□□ -0.42
NIPBL-206ENST00000509429 KCNH8Q96L42 1107 aa12.44□□□□□ -0.42
NIPBL-206ENST00000509429 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.41□□□□□ -0.42
NIPBL-206ENST00000509429 FBXO22Q8NEZ5 403 aa12.41□□□□□ -0.42
NIPBL-206ENST00000509429 ZFP91Q96JP5 570 aaPredicted RBP12.41□□□□□ -0.42
NIPBL-206ENST00000509429 KCNK17Q96T54 332 aa12.41□□□□□ -0.42
NIPBL-206ENST00000509429 TMC2Q8TDI7 906 aa12.37□□□□□ -0.43
NIPBL-206ENST00000509429 WNT2BQ93097 391 aa12.37□□□□□ -0.43
NIPBL-206ENST00000509429 GOLGA8CPA6NN73 597 aa12.36□□□□□ -0.43
NIPBL-206ENST00000509429 RIOK3O14730 519 aaKnown RBP12.36□□□□□ -0.43
NIPBL-206ENST00000509429 IFNLR1Q8IU57 520 aaPredicted RBP12.35□□□□□ -0.43
NIPBL-206ENST00000509429 PTCD2Q8WV60 388 aaKnown RBP12.35□□□□□ -0.43
NIPBL-206ENST00000509429 BHMG1C9JSJ3 638 aaPredicted RBP12.34□□□□□ -0.43
NIPBL-206ENST00000509429 ITGBL1O95965 494 aaPredicted RBP12.34□□□□□ -0.43
NIPBL-206ENST00000509429 SLC4A5Q9BY07 1137 aa12.34□□□□□ -0.43
NIPBL-206ENST00000509429 VGFO15240 615 aaPredicted RBP12.33□□□□□ -0.44
NIPBL-206ENST00000509429 GFRA3O60609 400 aa12.29□□□□□ -0.44
NIPBL-206ENST00000509429 MRPL50Q8N5N7 158 aaKnown RBP12.27□□□□□ -0.45
NIPBL-206ENST00000509429 RNF25Q96BH1 459 aaPredicted RBP12.25□□□□□ -0.45
NIPBL-206ENST00000509429 ZNF787Q6DD87 383 aa12.23□□□□□ -0.45
NIPBL-206ENST00000509429 MFRPQ9BY79 579 aa12.23□□□□□ -0.45
NIPBL-206ENST00000509429 ZNF775Q96BV0 537 aaPredicted RBP12.21□□□□□ -0.45
NIPBL-206ENST00000509429 TBC1D12O60347 775 aa12.19□□□□□ -0.46
NIPBL-206ENST00000509429 BCL2L12Q9HB09 334 aa12.17□□□□□ -0.46
NIPBL-206ENST00000509429 NRG2O14511 850 aaPredicted RBP12.16□□□□□ -0.46
NIPBL-206ENST00000509429 ZBED2Q9BTP6 218 aa12.16□□□□□ -0.46
NIPBL-206ENST00000509429 NBPF3Q9H094 633 aa12.16□□□□□ -0.46
NIPBL-206ENST00000509429 BCL11BQ9C0K0 894 aaPredicted RBP12.15□□□□□ -0.46
NIPBL-206ENST00000509429 KCNC4Q03721 635 aa12.14□□□□□ -0.47
NIPBL-206ENST00000509429 PTPREP23469 700 aa12.11□□□□□ -0.47
NIPBL-206ENST00000509429 ZNF454Q8N9F8 522 aa12.1□□□□□ -0.47
NIPBL-206ENST00000509429 FOXK1P85037 733 aa12.09□□□□□ -0.47
NIPBL-206ENST00000509429 NYAP1Q6ZVC0 841 aa12.09□□□□□ -0.47
NIPBL-206ENST00000509429 PLPP6Q8IY26 295 aa12.08□□□□□ -0.48
NIPBL-206ENST00000509429 ANKK1Q8NFD2 765 aa12.08□□□□□ -0.48
NIPBL-206ENST00000509429 STK24Q9Y6E0 443 aa12.08□□□□□ -0.48
NIPBL-206ENST00000509429 TAOK2Q9UL54 1235 aa12.05□□□□□ -0.48
NIPBL-206ENST00000509429 BCAMP50895 628 aa12□□□□□ -0.49
NIPBL-206ENST00000509429 SOWAHBA6NEL2 793 aa11.98□□□□□ -0.49
NIPBL-206ENST00000509429 FOSBP53539 338 aa11.98□□□□□ -0.49
NIPBL-206ENST00000509429 PRKD2Q9BZL6 878 aa11.98□□□□□ -0.49
NIPBL-206ENST00000509429 GPHNQ9NQX3 736 aaPredicted RBP11.96□□□□□ -0.49
NIPBL-206ENST00000509429 DSG2Q14126 1118 aa11.94□□□□□ -0.5
NIPBL-206ENST00000509429 WBP1LQ9NX94 342 aa11.94□□□□□ -0.5
NIPBL-206ENST00000509429 RABGEF1Q9UJ41 708 aa11.94□□□□□ -0.5
NIPBL-206ENST00000509429 STK25O00506 426 aa11.92□□□□□ -0.5
NIPBL-206ENST00000509429 PPP1R37O75864 691 aa11.92□□□□□ -0.5
NIPBL-206ENST00000509429 OXER1Q8TDS5 423 aa11.92□□□□□ -0.5
NIPBL-206ENST00000509429 V9GY48 417 aaPredicted RBP11.91□□□□□ -0.5
NIPBL-206ENST00000509429 LAPTM4BQ86VI4 370 aa11.9□□□□□ -0.5
NIPBL-206ENST00000509429 ZDHHC16Q969W1 377 aa11.88□□□□□ -0.51
NIPBL-206ENST00000509429 JPH4Q96JJ6 628 aa11.87□□□□□ -0.51
NIPBL-206ENST00000509429 ADAM33Q9BZ11 813 aa11.87□□□□□ -0.51
NIPBL-206ENST00000509429 PDZRN3Q9UPQ7 1066 aa11.87□□□□□ -0.51
NIPBL-206ENST00000509429 ZFRQ96KR1 1074 aaKnown RBP11.85□□□□□ -0.51
NIPBL-206ENST00000509429 UPF1Q92900 1129 aaKnown RBP eCLIP11.84□□□□□ -0.51
NIPBL-206ENST00000509429 PPP1R3GB7ZBB8 358 aa11.83□□□□□ -0.52
NIPBL-206ENST00000509429 LOC100996750A0A140TA64 210 aa11.82□□□□□ -0.52
NIPBL-206ENST00000509429 PROX2Q3B8N5 592 aa11.82□□□□□ -0.52
NIPBL-206ENST00000509429 KRTAP4-6Q9BYQ5 205 aa11.82□□□□□ -0.52
NIPBL-206ENST00000509429 ANO8Q9HCE9 1232 aaPredicted RBP11.81□□□□□ -0.52
NIPBL-206ENST00000509429 TREML4Q6UXN2 200 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms