RNA–Protein interactions for RNA: ENST00000509162.1

TOPBP1-207, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 2

Gene TOPBP1, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-207ENST00000509162 HECW1Q76N89 1606 aa11.89□□□□□ -0.51
TOPBP1-207ENST00000509162 CLIP1P30622 1438 aa11.88□□□□□ -0.51
TOPBP1-207ENST00000509162 CEP162Q5TB80 1403 aa11.88□□□□□ -0.51
TOPBP1-207ENST00000509162 MAGI3Q5TCQ9 1506 aa11.88□□□□□ -0.51
TOPBP1-207ENST00000509162 TSPOAP1O95153 1857 aa11.88□□□□□ -0.51
TOPBP1-207ENST00000509162 ABCA9Q8IUA7 1624 aa11.86□□□□□ -0.51
TOPBP1-207ENST00000509162 TTC37Q6PGP7 1564 aa11.86□□□□□ -0.51
TOPBP1-207ENST00000509162 KIF14Q15058 1648 aa11.85□□□□□ -0.51
TOPBP1-207ENST00000509162 FMN1Q68DA7 1419 aa11.85□□□□□ -0.51
TOPBP1-207ENST00000509162 CFAP43Q8NDM7 1665 aa11.84□□□□□ -0.51
TOPBP1-207ENST00000509162 FAM69CQ0P6D2 419 aa11.84□□□□□ -0.51
TOPBP1-207ENST00000509162 COL17A1Q9UMD9 1497 aaPredicted RBP11.83□□□□□ -0.52
TOPBP1-207ENST00000509162 LOC105371045A0A1W2PR82 267 aa11.83□□□□□ -0.52
TOPBP1-207ENST00000509162 CASKIN1Q8WXD9 1431 aa11.83□□□□□ -0.52
TOPBP1-207ENST00000509162 FYCO1Q9BQS8 1478 aa11.83□□□□□ -0.52
TOPBP1-207ENST00000509162 NPM1P06748 294 aaKnown RBP eCLIP11.81□□□□□ -0.52
TOPBP1-207ENST00000509162 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.81□□□□□ -0.52
TOPBP1-207ENST00000509162 KDM6BO15054 1643 aa11.79□□□□□ -0.52
TOPBP1-207ENST00000509162 FRMPD1Q5SYB0 1578 aa11.79□□□□□ -0.52
TOPBP1-207ENST00000509162 TROQ12816 1431 aaPredicted RBP11.75□□□□□ -0.53
TOPBP1-207ENST00000509162 CD109Q6YHK3 1445 aa11.75□□□□□ -0.53
TOPBP1-207ENST00000509162 CCDC18Q5T9S5 1454 aa11.75□□□□□ -0.53
TOPBP1-207ENST00000509162 TEX14Q8IWB6 1497 aa11.72□□□□□ -0.53
TOPBP1-207ENST00000509162 VPS8Q8N3P4 1428 aa11.72□□□□□ -0.53
TOPBP1-207ENST00000509162 AKT1S1Q96B36 256 aa11.72□□□□□ -0.53
TOPBP1-207ENST00000509162 KCNH8Q96L42 1107 aa11.71□□□□□ -0.53
TOPBP1-207ENST00000509162 PREX2Q70Z35 1606 aa11.71□□□□□ -0.54
TOPBP1-207ENST00000509162 TIAM1Q13009 1591 aa11.71□□□□□ -0.54
TOPBP1-207ENST00000509162 MYO5CQ9NQX4 1742 aa11.7□□□□□ -0.54
TOPBP1-207ENST00000509162 CDC42BPAQ5VT25 1732 aa11.69□□□□□ -0.54
TOPBP1-207ENST00000509162 RICTORQ6R327 1708 aa11.69□□□□□ -0.54
TOPBP1-207ENST00000509162 CDC42BPBQ9Y5S2 1711 aa11.69□□□□□ -0.54
TOPBP1-207ENST00000509162 SP7Q8TDD2 431 aaPredicted RBP11.68□□□□□ -0.54
TOPBP1-207ENST00000509162 EHBP1L1Q8N3D4 1523 aa11.68□□□□□ -0.54
TOPBP1-207ENST00000509162 ARAP3Q8WWN8 1544 aa11.68□□□□□ -0.54
TOPBP1-207ENST00000509162 SIGLEC1Q9BZZ2 1709 aa11.67□□□□□ -0.54
TOPBP1-207ENST00000509162 NEO1Q92859 1461 aa11.67□□□□□ -0.54
TOPBP1-207ENST00000509162 FANCAO15360 1455 aa11.66□□□□□ -0.54
TOPBP1-207ENST00000509162 CFAP74Q9C0B2 1584 aa11.66□□□□□ -0.54
TOPBP1-207ENST00000509162 PLCH2O75038 1416 aa11.65□□□□□ -0.54
TOPBP1-207ENST00000509162 SAMD9LQ8IVG5 1584 aa11.65□□□□□ -0.54
TOPBP1-207ENST00000509162 ABCC1P33527 1531 aa11.65□□□□□ -0.55
TOPBP1-207ENST00000509162 ARHGEF12Q9NZN5 1544 aa11.65□□□□□ -0.55
TOPBP1-207ENST00000509162 ATP1B4Q9UN42 357 aaPredicted RBP11.64□□□□□ -0.55
TOPBP1-207ENST00000509162 ZMYM4Q5VZL5 1548 aa11.64□□□□□ -0.55
TOPBP1-207ENST00000509162 ARHGEF40Q8TER5 1519 aa11.64□□□□□ -0.55
TOPBP1-207ENST00000509162 ITSN2Q9NZM3 1697 aa11.63□□□□□ -0.55
TOPBP1-207ENST00000509162 PLEKHD1A6NEE1 506 aa11.63□□□□□ -0.55
TOPBP1-207ENST00000509162 RTN4Q9NQC3 1192 aaKnown RBP11.63□□□□□ -0.55
TOPBP1-207ENST00000509162 AKNAQ7Z591 1439 aa11.62□□□□□ -0.55
TOPBP1-207ENST00000509162 GPATCH8Q9UKJ3 1502 aaKnown RBP11.62□□□□□ -0.55
TOPBP1-207ENST00000509162 AMER1Q5JTC6 1135 aaPredicted RBP11.62□□□□□ -0.55
TOPBP1-207ENST00000509162 POGZQ7Z3K3 1410 aa11.61□□□□□ -0.55
TOPBP1-207ENST00000509162 ARHGAP5Q13017 1502 aa11.61□□□□□ -0.55
TOPBP1-207ENST00000509162 LRRC9Q6ZRR7 1453 aa11.61□□□□□ -0.55
TOPBP1-207ENST00000509162 KDM5CP41229 1560 aa11.61□□□□□ -0.55
TOPBP1-207ENST00000509162 MAP3K1Q13233 1512 aa11.6□□□□□ -0.55
TOPBP1-207ENST00000509162 ADGRL1O94910 1474 aa11.6□□□□□ -0.55
TOPBP1-207ENST00000509162 NCOA2Q15596 1464 aa11.6□□□□□ -0.55
TOPBP1-207ENST00000509162 SPDYE2BA6NHP3 402 aa11.6□□□□□ -0.55
TOPBP1-207ENST00000509162 SPDYE6P0CI01 402 aa11.6□□□□□ -0.55
TOPBP1-207ENST00000509162 MKRN4PQ13434 485 aaPredicted RBP11.6□□□□□ -0.55
TOPBP1-207ENST00000509162 SPDYE2Q495Y8 402 aa11.6□□□□□ -0.55
TOPBP1-207ENST00000509162 CHRDL2Q6WN34 429 aa11.6□□□□□ -0.55
TOPBP1-207ENST00000509162 YEATS2Q9ULM3 1422 aa11.59□□□□□ -0.55
TOPBP1-207ENST00000509162 SUPT6HQ7KZ85 1726 aaKnown RBP11.58□□□□□ -0.56
TOPBP1-207ENST00000509162 SYCP2Q9BX26 1530 aa11.58□□□□□ -0.56
TOPBP1-207ENST00000509162 DENND4BO75064 1496 aaPredicted RBP11.57□□□□□ -0.56
TOPBP1-207ENST00000509162 ABCA6Q8N139 1617 aa11.57□□□□□ -0.56
TOPBP1-207ENST00000509162 RAPGEF3O95398 923 aa11.57□□□□□ -0.56
TOPBP1-207ENST00000509162 TRAPPC8Q9Y2L5 1435 aa11.57□□□□□ -0.56
TOPBP1-207ENST00000509162 MTUS2Q5JR59 1369 aa11.56□□□□□ -0.56
TOPBP1-207ENST00000509162 KANK4Q5T7N3 995 aaPredicted RBP11.56□□□□□ -0.56
TOPBP1-207ENST00000509162 REM2Q8IYK8 340 aaPredicted RBP11.56□□□□□ -0.56
TOPBP1-207ENST00000509162 DIP2CQ9Y2E4 1556 aa11.55□□□□□ -0.56
TOPBP1-207ENST00000509162 SCAPERQ9BY12 1400 aa11.55□□□□□ -0.56
TOPBP1-207ENST00000509162 ZFYVE16Q7Z3T8 1539 aa11.55□□□□□ -0.56
TOPBP1-207ENST00000509162 PHLDB1Q86UU1 1377 aa11.54□□□□□ -0.56
TOPBP1-207ENST00000509162 INO80Q9ULG1 1556 aaPredicted RBP11.54□□□□□ -0.56
TOPBP1-207ENST00000509162 HECW2Q9P2P5 1572 aa11.54□□□□□ -0.56
TOPBP1-207ENST00000509162 SLC24A1O60721 1099 aa11.53□□□□□ -0.56
TOPBP1-207ENST00000509162 CDK11AQ9UQ88 783 aaPredicted RBP11.53□□□□□ -0.56
TOPBP1-207ENST00000509162 KIDINS220Q9ULH0 1771 aa11.53□□□□□ -0.56
TOPBP1-207ENST00000509162 MBD5Q9P267 1494 aa11.52□□□□□ -0.56
TOPBP1-207ENST00000509162 CAMSAP2Q08AD1 1489 aa11.51□□□□□ -0.57
TOPBP1-207ENST00000509162 ZNF518AQ6AHZ1 1483 aa11.51□□□□□ -0.57
TOPBP1-207ENST00000509162 ADAMTSL3P82987 1691 aa11.5□□□□□ -0.57
TOPBP1-207ENST00000509162 KDM4FA0A1W2PPD8 638 aa11.5□□□□□ -0.57
TOPBP1-207ENST00000509162 ZNF644Q9H582 1327 aaPredicted RBP11.5□□□□□ -0.57
TOPBP1-207ENST00000509162 BCORL1Q5H9F3 1711 aa11.49□□□□□ -0.57
TOPBP1-207ENST00000509162 CCNB3Q8WWL7 1395 aa11.49□□□□□ -0.57
TOPBP1-207ENST00000509162 EFCAB2Q5VUJ9 269 aa11.48□□□□□ -0.57
TOPBP1-207ENST00000509162 MLH3Q9UHC1 1453 aa11.48□□□□□ -0.57
TOPBP1-207ENST00000509162 PLXNC1O60486 1568 aa11.48□□□□□ -0.57
TOPBP1-207ENST00000509162 REREQ9P2R6 1566 aa11.48□□□□□ -0.57
TOPBP1-207ENST00000509162 MADDQ8WXG6 1647 aa11.48□□□□□ -0.57
TOPBP1-207ENST00000509162 MAGI2Q86UL8 1455 aa11.47□□□□□ -0.57
TOPBP1-207ENST00000509162 KIAA1107Q9UPP5 1409 aa11.47□□□□□ -0.57
TOPBP1-207ENST00000509162 ADGBQ8N7X0 1667 aa11.46□□□□□ -0.57
TOPBP1-207ENST00000509162 ARHGEF5Q12774 1597 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms