RNA–Protein interactions for RNA: ENST00000508238.5

UBE2D3-222, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 4

Gene UBE2D3, Length 547 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-222ENST00000508238 CFAP43Q8NDM7 1665 aa13.13□□□□□ -0.31
UBE2D3-222ENST00000508238 FHOD3Q2V2M9 1422 aa13.13□□□□□ -0.31
UBE2D3-222ENST00000508238 UBTFP17480 764 aaKnown RBP13.12□□□□□ -0.31
UBE2D3-222ENST00000508238 RANGAP1P46060 587 aaPredicted RBP13.12□□□□□ -0.31
UBE2D3-222ENST00000508238 NUP153P49790 1475 aaKnown RBP13.11□□□□□ -0.31
UBE2D3-222ENST00000508238 ARID3CA6NKF2 412 aa13.11□□□□□ -0.31
UBE2D3-222ENST00000508238 ZBTB12Q9Y330 459 aaPredicted RBP13.09□□□□□ -0.31
UBE2D3-222ENST00000508238 PHLDB1Q86UU1 1377 aa13.07□□□□□ -0.32
UBE2D3-222ENST00000508238 KDM4FA0A1W2PPD8 638 aa13.07□□□□□ -0.32
UBE2D3-222ENST00000508238 PLEKHD1A6NEE1 506 aa13.07□□□□□ -0.32
UBE2D3-222ENST00000508238 ABCA9Q8IUA7 1624 aa13.06□□□□□ -0.32
UBE2D3-222ENST00000508238 ARAP3Q8WWN8 1544 aa13.05□□□□□ -0.32
UBE2D3-222ENST00000508238 ARHGAP35Q9NRY4 1499 aa13.04□□□□□ -0.32
UBE2D3-222ENST00000508238 FMN1Q68DA7 1419 aa13.04□□□□□ -0.32
UBE2D3-222ENST00000508238 NEO1Q92859 1461 aa13.01□□□□□ -0.33
UBE2D3-222ENST00000508238 SPDYE4A6NLX3 237 aa12.99□□□□□ -0.33
UBE2D3-222ENST00000508238 CDK11AQ9UQ88 783 aaPredicted RBP12.97□□□□□ -0.33
UBE2D3-222ENST00000508238 CDK13Q14004 1512 aaKnown RBP12.96□□□□□ -0.33
UBE2D3-222ENST00000508238 ADGRL1O94910 1474 aa12.96□□□□□ -0.34
UBE2D3-222ENST00000508238 HECW1Q76N89 1606 aa12.95□□□□□ -0.34
UBE2D3-222ENST00000508238 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.95□□□□□ -0.346e-33■□□□□ 10.7
UBE2D3-222ENST00000508238 RAPGEF3O95398 923 aa12.94□□□□□ -0.34
UBE2D3-222ENST00000508238 ATP1B4Q9UN42 357 aaPredicted RBP12.93□□□□□ -0.34
UBE2D3-222ENST00000508238 FANCAO15360 1455 aa12.92□□□□□ -0.34
UBE2D3-222ENST00000508238 PLCH2O75038 1416 aa12.92□□□□□ -0.34
UBE2D3-222ENST00000508238 AKNAQ7Z591 1439 aa12.92□□□□□ -0.34
UBE2D3-222ENST00000508238 CASKIN1Q8WXD9 1431 aa12.92□□□□□ -0.34
UBE2D3-222ENST00000508238 TTC37Q6PGP7 1564 aa12.91□□□□□ -0.34
UBE2D3-222ENST00000508238 TROQ12816 1431 aaPredicted RBP12.9□□□□□ -0.34
UBE2D3-222ENST00000508238 DENND4BO75064 1496 aaPredicted RBP12.9□□□□□ -0.34
UBE2D3-222ENST00000508238 CFAP74Q9C0B2 1584 aa12.89□□□□□ -0.35
UBE2D3-222ENST00000508238 CLIP1P30622 1438 aa12.88□□□□□ -0.35
UBE2D3-222ENST00000508238 EFCAB2Q5VUJ9 269 aa12.88□□□□□ -0.35
UBE2D3-222ENST00000508238 FRMPD1Q5SYB0 1578 aa12.88□□□□□ -0.35
UBE2D3-222ENST00000508238 CCDC18Q5T9S5 1454 aa12.87□□□□□ -0.35
UBE2D3-222ENST00000508238 RICTORQ6R327 1708 aa12.86□□□□□ -0.35
UBE2D3-222ENST00000508238 LRRIQ1Q96JM4 1722 aa12.86□□□□□ -0.35
UBE2D3-222ENST00000508238 FYCO1Q9BQS8 1478 aa12.85□□□□□ -0.35
UBE2D3-222ENST00000508238 MAGI2Q86UL8 1455 aa12.85□□□□□ -0.35
UBE2D3-222ENST00000508238 SCAPERQ9BY12 1400 aa12.84□□□□□ -0.35
UBE2D3-222ENST00000508238 PCF11O94913 1555 aaKnown RBP12.84□□□□□ -0.35
UBE2D3-222ENST00000508238 KIF14Q15058 1648 aa12.84□□□□□ -0.35
UBE2D3-222ENST00000508238 ZMYM4Q5VZL5 1548 aa12.83□□□□□ -0.35
UBE2D3-222ENST00000508238 MYO5CQ9NQX4 1742 aa12.83□□□□□ -0.36
UBE2D3-222ENST00000508238 POGZQ7Z3K3 1410 aa12.81□□□□□ -0.36
UBE2D3-222ENST00000508238 ARHGEF40Q8TER5 1519 aa12.81□□□□□ -0.36
UBE2D3-222ENST00000508238 ADAMTSL3P82987 1691 aa12.8□□□□□ -0.36
UBE2D3-222ENST00000508238 ZNF692Q9BU19 519 aaPredicted RBP12.79□□□□□ -0.36
UBE2D3-222ENST00000508238 ARID4BQ4LE39 1312 aaPredicted RBP12.79□□□□□ -0.36
UBE2D3-222ENST00000508238 ARHGAP5Q13017 1502 aa12.78□□□□□ -0.36
UBE2D3-222ENST00000508238 YEATS2Q9ULM3 1422 aa12.78□□□□□ -0.36
UBE2D3-222ENST00000508238 ZFYVE16Q7Z3T8 1539 aa12.78□□□□□ -0.36
UBE2D3-222ENST00000508238 BCORL1Q5H9F3 1711 aa12.77□□□□□ -0.36
UBE2D3-222ENST00000508238 CDC42BPBQ9Y5S2 1711 aa12.77□□□□□ -0.36
UBE2D3-222ENST00000508238 SPDYE2BA6NHP3 402 aa12.77□□□□□ -0.37
UBE2D3-222ENST00000508238 SPDYE6P0CI01 402 aa12.77□□□□□ -0.37
UBE2D3-222ENST00000508238 SPDYE2Q495Y8 402 aa12.77□□□□□ -0.37
UBE2D3-222ENST00000508238 PROM2Q8N271 834 aa12.77□□□□□ -0.37
UBE2D3-222ENST00000508238 CEP162Q5TB80 1403 aa12.77□□□□□ -0.37
UBE2D3-222ENST00000508238 ZNF518AQ6AHZ1 1483 aa12.77□□□□□ -0.37
UBE2D3-222ENST00000508238 AFAP1Q8N556 730 aa12.76□□□□□ -0.37
UBE2D3-222ENST00000508238 ATP10AO60312 1499 aa12.76□□□□□ -0.37
UBE2D3-222ENST00000508238 PTPRMP28827 1452 aa12.76□□□□□ -0.37
UBE2D3-222ENST00000508238 PREX2Q70Z35 1606 aa12.75□□□□□ -0.37
UBE2D3-222ENST00000508238 KDM5CP41229 1560 aa12.74□□□□□ -0.37
UBE2D3-222ENST00000508238 GPATCH8Q9UKJ3 1502 aaKnown RBP12.73□□□□□ -0.37
UBE2D3-222ENST00000508238 CDC42BPAQ5VT25 1732 aa12.73□□□□□ -0.37
UBE2D3-222ENST00000508238 MLH3Q9UHC1 1453 aa12.72□□□□□ -0.37
UBE2D3-222ENST00000508238 HECW2Q9P2P5 1572 aa12.72□□□□□ -0.37
UBE2D3-222ENST00000508238 ARHGEF12Q9NZN5 1544 aa12.72□□□□□ -0.37
UBE2D3-222ENST00000508238 C9orf84Q5VXU9 1444 aa12.71□□□□□ -0.37
UBE2D3-222ENST00000508238 MTUS2Q5JR59 1369 aa12.71□□□□□ -0.37
UBE2D3-222ENST00000508238 MADDQ8WXG6 1647 aa12.71□□□□□ -0.37
UBE2D3-222ENST00000508238 LOC105371045A0A1W2PR82 267 aa12.71□□□□□ -0.37
UBE2D3-222ENST00000508238 ABCC1P33527 1531 aa12.71□□□□□ -0.38
UBE2D3-222ENST00000508238 SIGLEC1Q9BZZ2 1709 aa12.71□□□□□ -0.38
UBE2D3-222ENST00000508238 TRAPPC8Q9Y2L5 1435 aa12.71□□□□□ -0.38
UBE2D3-222ENST00000508238 KIAA1107Q9UPP5 1409 aa12.7□□□□□ -0.38
UBE2D3-222ENST00000508238 CFDP1Q9UEE9 299 aaPredicted RBP12.69□□□□□ -0.38
UBE2D3-222ENST00000508238 SSUH2Q9Y2M2 353 aa12.69□□□□□ -0.38
UBE2D3-222ENST00000508238 CCNB3Q8WWL7 1395 aa12.69□□□□□ -0.38
UBE2D3-222ENST00000508238 REREQ9P2R6 1566 aa12.68□□□□□ -0.38
UBE2D3-222ENST00000508238 ITSN2Q9NZM3 1697 aa12.67□□□□□ -0.38
UBE2D3-222ENST00000508238 PLEKHH2Q8IVE3 1493 aa12.67□□□□□ -0.38
UBE2D3-222ENST00000508238 RBM42Q9BTD8 480 aaKnown RBP12.67□□□□□ -0.38
UBE2D3-222ENST00000508238 FBXO3Q9UK99 471 aa12.67□□□□□ -0.38
UBE2D3-222ENST00000508238 ZNF777Q9ULD5 760 aaPredicted RBP12.67□□□□□ -0.38
UBE2D3-222ENST00000508238 SAMD9LQ8IVG5 1584 aa12.66□□□□□ -0.38
UBE2D3-222ENST00000508238 MLECQ14165 292 aa12.66□□□□□ -0.38
UBE2D3-222ENST00000508238 SETD1BQ9UPS6 1966 aaKnown RBP12.65□□□□□ -0.38
UBE2D3-222ENST00000508238 DIP2CQ9Y2E4 1556 aa12.65□□□□□ -0.38
UBE2D3-222ENST00000508238 RIMS1Q86UR5 1692 aaKnown RBP12.65□□□□□ -0.38
UBE2D3-222ENST00000508238 HNRNPMP52272 730 aaKnown RBP eCLIP12.65□□□□□ -0.384e-13■■■■■ 32.7
UBE2D3-222ENST00000508238 MYT1LQ9UL68 1186 aa12.65□□□□□ -0.38
UBE2D3-222ENST00000508238 AGLP35573 1532 aa12.65□□□□□ -0.38
UBE2D3-222ENST00000508238 EHBP1L1Q8N3D4 1523 aa12.65□□□□□ -0.38
UBE2D3-222ENST00000508238 VPS8Q8N3P4 1428 aa12.64□□□□□ -0.39
UBE2D3-222ENST00000508238 KIDINS220Q9ULH0 1771 aa12.64□□□□□ -0.39
UBE2D3-222ENST00000508238 SPAG9O60271 1321 aaKnown RBP12.63□□□□□ -0.39
UBE2D3-222ENST00000508238 ABCA6Q8N139 1617 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms