RNA–Protein interactions for RNA: ENST00000506941.1

NPHP4-210, Transcript of nephrocystin 4, humanhuman

TSL 4

Gene NPHP4, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-210ENST00000506941 FRMPD1Q5SYB0 1578 aa28.73■■■□□ 2.19
NPHP4-210ENST00000506941 RICTORQ6R327 1708 aa28.73■■■□□ 2.19
NPHP4-210ENST00000506941 AKNAQ7Z591 1439 aa28.73■■■□□ 2.19
NPHP4-210ENST00000506941 ITSN2Q9NZM3 1697 aa28.69■■■□□ 2.18
NPHP4-210ENST00000506941 GPATCH8Q9UKJ3 1502 aaKnown RBP28.69■■■□□ 2.18
NPHP4-210ENST00000506941 NCOA2Q15596 1464 aa28.66■■■□□ 2.18
NPHP4-210ENST00000506941 KANK4Q5T7N3 995 aaPredicted RBP28.66■■■□□ 2.18
NPHP4-210ENST00000506941 ADGRL1O94910 1474 aa28.66■■■□□ 2.18
NPHP4-210ENST00000506941 EFCAB2Q5VUJ9 269 aa28.63■■■□□ 2.17
NPHP4-210ENST00000506941 CCNB3Q8WWL7 1395 aa28.62■■■□□ 2.17
NPHP4-210ENST00000506941 SAMD9LQ8IVG5 1584 aa28.62■■■□□ 2.17
NPHP4-210ENST00000506941 DENND4BO75064 1496 aaPredicted RBP28.61■■■□□ 2.17
NPHP4-210ENST00000506941 ABCC1P33527 1531 aa28.61■■■□□ 2.17
NPHP4-210ENST00000506941 RAPGEF3O95398 923 aa28.6■■■□□ 2.17
NPHP4-210ENST00000506941 SCAPERQ9BY12 1400 aa28.59■■■□□ 2.17
NPHP4-210ENST00000506941 APLP2Q06481 763 aa28.57■■■□□ 2.16
NPHP4-210ENST00000506941 POGZQ7Z3K3 1410 aa28.56■■■□□ 2.16
NPHP4-210ENST00000506941 ZMYM4Q5VZL5 1548 aa28.55■■■□□ 2.16
NPHP4-210ENST00000506941 ARHGEF12Q9NZN5 1544 aa28.54■■■□□ 2.16
NPHP4-210ENST00000506941 SYCP2Q9BX26 1530 aa28.51■■■□□ 2.15
NPHP4-210ENST00000506941 KDM5CP41229 1560 aa28.5■■■□□ 2.15
NPHP4-210ENST00000506941 CFDP1Q9UEE9 299 aaPredicted RBP28.5■■■□□ 2.15
NPHP4-210ENST00000506941 ZNF777Q9ULD5 760 aaPredicted RBP28.48■■■□□ 2.15
NPHP4-210ENST00000506941 ARHGEF40Q8TER5 1519 aa28.48■■■□□ 2.15
NPHP4-210ENST00000506941 ZNF518AQ6AHZ1 1483 aa28.47■■■□□ 2.15
NPHP4-210ENST00000506941 TRAPPC8Q9Y2L5 1435 aa28.45■■■□□ 2.15
NPHP4-210ENST00000506941 HECW2Q9P2P5 1572 aa28.43■■■□□ 2.14
NPHP4-210ENST00000506941 PLEKHH2Q8IVE3 1493 aa28.43■■■□□ 2.14
NPHP4-210ENST00000506941 MYOM3Q5VTT5 1437 aa28.43■■■□□ 2.14
NPHP4-210ENST00000506941 ZNF644Q9H582 1327 aaPredicted RBP28.43■■■□□ 2.14
NPHP4-210ENST00000506941 CAMSAP2Q08AD1 1489 aa28.42■■■□□ 2.14
NPHP4-210ENST00000506941 ZFYVE16Q7Z3T8 1539 aa28.42■■■□□ 2.14
NPHP4-210ENST00000506941 KIAA1107Q9UPP5 1409 aa28.42■■■□□ 2.14
NPHP4-210ENST00000506941 AFAP1Q8N556 730 aa28.4■■■□□ 2.14
NPHP4-210ENST00000506941 YEATS2Q9ULM3 1422 aa28.4■■■□□ 2.14
NPHP4-210ENST00000506941 MAGI2Q86UL8 1455 aa28.4■■■□□ 2.14
NPHP4-210ENST00000506941 SIGLEC1Q9BZZ2 1709 aa28.39■■■□□ 2.14
NPHP4-210ENST00000506941 KIDINS220Q9ULH0 1771 aa28.39■■■□□ 2.13
NPHP4-210ENST00000506941 HNRNPMP52272 730 aaKnown RBP eCLIP28.37■■■□□ 2.13
NPHP4-210ENST00000506941 MBD5Q9P267 1494 aa28.36■■■□□ 2.13
NPHP4-210ENST00000506941 ABCA6Q8N139 1617 aa28.36■■■□□ 2.13
NPHP4-210ENST00000506941 MIA2Q96PC5 1412 aa28.35■■■□□ 2.13
NPHP4-210ENST00000506941 MLH3Q9UHC1 1453 aa28.34■■■□□ 2.13
NPHP4-210ENST00000506941 INO80Q9ULG1 1556 aaPredicted RBP28.33■■■□□ 2.13
NPHP4-210ENST00000506941 DIP2CQ9Y2E4 1556 aa28.33■■■□□ 2.13
NPHP4-210ENST00000506941 PTPN23Q9H3S7 1636 aa28.33■■■□□ 2.13
NPHP4-210ENST00000506941 ARHGEF5Q12774 1597 aa28.31■■■□□ 2.12
NPHP4-210ENST00000506941 FGD6Q6ZV73 1430 aa28.28■■■□□ 2.12
NPHP4-210ENST00000506941 ATP7AQ04656 1500 aa28.28■■■□□ 2.12
NPHP4-210ENST00000506941 PPARGC1BQ86YN6 1023 aaKnown RBP28.26■■■□□ 2.11
NPHP4-210ENST00000506941 CCDC141Q6ZP82 1450 aa28.26■■■□□ 2.11
NPHP4-210ENST00000506941 ATP10AO60312 1499 aa28.25■■■□□ 2.11
NPHP4-210ENST00000506941 BCORL1Q5H9F3 1711 aa28.24■■■□□ 2.11
NPHP4-210ENST00000506941 CROCC2H7BZ55 1655 aa28.24■■■□□ 2.11
NPHP4-210ENST00000506941 TCOF1Q13428 1488 aaKnown RBP28.23■■■□□ 2.11
NPHP4-210ENST00000506941 C9orf84Q5VXU9 1444 aa28.22■■■□□ 2.11
NPHP4-210ENST00000506941 REREQ9P2R6 1566 aa28.22■■■□□ 2.11
NPHP4-210ENST00000506941 ADGBQ8N7X0 1667 aa28.22■■■□□ 2.11
NPHP4-210ENST00000506941 SPAG9O60271 1321 aaKnown RBP28.21■■■□□ 2.11
NPHP4-210ENST00000506941 KDM4FA0A1W2PPD8 638 aa28.19■■■□□ 2.1
NPHP4-210ENST00000506941 MYT1LQ9UL68 1186 aa28.19■■■□□ 2.1
NPHP4-210ENST00000506941 ADAMTSL3P82987 1691 aa28.19■■■□□ 2.1
NPHP4-210ENST00000506941 DNMT1P26358 1616 aaKnown RBP28.18■■■□□ 2.1
NPHP4-210ENST00000506941 MAST1Q9Y2H9 1570 aa28.17■■■□□ 2.1
NPHP4-210ENST00000506941 RTEL1-TNFRSF6BF6WH68 1400 aa28.14■■■□□ 2.1
NPHP4-210ENST00000506941 PLXNC1O60486 1568 aa28.13■■■□□ 2.09
NPHP4-210ENST00000506941 RSPH4AQ5TD94 716 aa28.13■■■□□ 2.09
NPHP4-210ENST00000506941 ARID4BQ4LE39 1312 aaPredicted RBP28.12■■■□□ 2.09
NPHP4-210ENST00000506941 MADDQ8WXG6 1647 aa28.11■■■□□ 2.09
NPHP4-210ENST00000506941 AGLP35573 1532 aa28.09■■■□□ 2.09
NPHP4-210ENST00000506941 FER1L4A9Z1Z3 1794 aa28.09■■■□□ 2.09
NPHP4-210ENST00000506941 ABCC5O15440 1437 aa28.09■■■□□ 2.09
NPHP4-210ENST00000506941 DAPK1P53355 1430 aa28.08■■■□□ 2.09
NPHP4-210ENST00000506941 A2MP01023 1474 aa28.07■■■□□ 2.08
NPHP4-210ENST00000506941 SHANK2Q9UPX8 1470 aa28.07■■■□□ 2.08
NPHP4-210ENST00000506941 RIMS1Q86UR5 1692 aaKnown RBP28.05■■■□□ 2.08
NPHP4-210ENST00000506941 TSPY4P0CV99 314 aa28.03■■■□□ 2.08
NPHP4-210ENST00000506941 TSPY10P0CW01 314 aa28.03■■■□□ 2.08
NPHP4-210ENST00000506941 FAM50AQ14320 339 aaKnown RBP28.02■■■□□ 2.08
NPHP4-210ENST00000506941 MLECQ14165 292 aa27.98■■■□□ 2.07
NPHP4-210ENST00000506941 RRBP1Q9P2E9 1410 aaKnown RBP27.96■■■□□ 2.07
NPHP4-210ENST00000506941 DHX29Q7Z478 1369 aaKnown RBP27.96■■■□□ 2.07
NPHP4-210ENST00000506941 EIF2AK4Q9P2K8 1649 aaKnown RBP27.92■■■□□ 2.06
NPHP4-210ENST00000506941 PTPRMP28827 1452 aa27.92■■■□□ 2.06
NPHP4-210ENST00000506941 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.92■■■□□ 2.06
NPHP4-210ENST00000506941 PTPRKQ15262 1439 aa27.92■■■□□ 2.06
NPHP4-210ENST00000506941 ADGRL2O95490 1459 aa27.91■■■□□ 2.06
NPHP4-210ENST00000506941 AEBP2Q6ZN18 517 aaPredicted RBP27.91■■■□□ 2.06
NPHP4-210ENST00000506941 DUOX2Q9NRD8 1548 aa27.91■■■□□ 2.06
NPHP4-210ENST00000506941 CHIC2Q9UKJ5 165 aa27.89■■■□□ 2.06
NPHP4-210ENST00000506941 RNF17Q9BXT8 1623 aaKnown RBP27.89■■■□□ 2.05
NPHP4-210ENST00000506941 KIF15Q9NS87 1388 aa27.88■■■□□ 2.05
NPHP4-210ENST00000506941 CLTCQ00610 1675 aaKnown RBP27.87■■■□□ 2.05
NPHP4-210ENST00000506941 NCOA1Q15788 1441 aa27.86■■■□□ 2.05
NPHP4-210ENST00000506941 C3P01024 1663 aa27.85■■■□□ 2.05
NPHP4-210ENST00000506941 ANKRD30AQ9BXX3 1397 aa27.85■■■□□ 2.05
NPHP4-210ENST00000506941 MROH2AA6NES4 1674 aa27.84■■■□□ 2.05
NPHP4-210ENST00000506941 RRP7BPQ9NSQ0 103 aa27.83■■■□□ 2.05
NPHP4-210ENST00000506941 MROH1Q8NDA8 1641 aa27.82■■■□□ 2.04
NPHP4-210ENST00000506941 KIF3BO15066 747 aa27.81■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms