RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 KCNH8Q96L42 1107 aa13.22□□□□□ -0.29
PDGFC-205ENST00000506880 EFCAB2Q5VUJ9 269 aa13.21□□□□□ -0.29
PDGFC-205ENST00000506880 CDC42BPAQ5VT25 1732 aa13.21□□□□□ -0.3
PDGFC-205ENST00000506880 FANCAO15360 1455 aa13.2□□□□□ -0.3
PDGFC-205ENST00000506880 MIA2Q96PC5 1412 aa13.2□□□□□ -0.3
PDGFC-205ENST00000506880 CDC42BPBQ9Y5S2 1711 aa13.19□□□□□ -0.3
PDGFC-205ENST00000506880 KIAA1107Q9UPP5 1409 aa13.19□□□□□ -0.3
PDGFC-205ENST00000506880 CCNB3Q8WWL7 1395 aa13.19□□□□□ -0.3
PDGFC-205ENST00000506880 NCOA2Q15596 1464 aa13.18□□□□□ -0.3
PDGFC-205ENST00000506880 ARID3CA6NKF2 412 aa13.18□□□□□ -0.3
PDGFC-205ENST00000506880 RSPH4AQ5TD94 716 aa13.18□□□□□ -0.3
PDGFC-205ENST00000506880 GPATCH8Q9UKJ3 1502 aaKnown RBP13.18□□□□□ -0.3
PDGFC-205ENST00000506880 KDM6BO15054 1643 aa13.17□□□□□ -0.3
PDGFC-205ENST00000506880 MAGI2Q86UL8 1455 aa13.16□□□□□ -0.3
PDGFC-205ENST00000506880 AKNAQ7Z591 1439 aa13.16□□□□□ -0.3
PDGFC-205ENST00000506880 ARHGAP5Q13017 1502 aa13.16□□□□□ -0.3
PDGFC-205ENST00000506880 ZMYM4Q5VZL5 1548 aa13.14□□□□□ -0.31
PDGFC-205ENST00000506880 ZNF518AQ6AHZ1 1483 aa13.14□□□□□ -0.31
PDGFC-205ENST00000506880 MYOM3Q5VTT5 1437 aa13.13□□□□□ -0.31
PDGFC-205ENST00000506880 DENND4BO75064 1496 aaPredicted RBP13.13□□□□□ -0.31
PDGFC-205ENST00000506880 ADGRL1O94910 1474 aa13.13□□□□□ -0.31
PDGFC-205ENST00000506880 ABCC1P33527 1531 aa13.13□□□□□ -0.31
PDGFC-205ENST00000506880 CFDP1Q9UEE9 299 aaPredicted RBP13.12□□□□□ -0.31
PDGFC-205ENST00000506880 RICTORQ6R327 1708 aa13.12□□□□□ -0.31
PDGFC-205ENST00000506880 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.11□□□□□ -0.31
PDGFC-205ENST00000506880 KDM5CP41229 1560 aa13.11□□□□□ -0.31
PDGFC-205ENST00000506880 POGZQ7Z3K3 1410 aa13.1□□□□□ -0.31
PDGFC-205ENST00000506880 ARHGEF5Q12774 1597 aa13.1□□□□□ -0.31
PDGFC-205ENST00000506880 TCOF1Q13428 1488 aaKnown RBP13.08□□□□□ -0.32
PDGFC-205ENST00000506880 MLH3Q9UHC1 1453 aa13.08□□□□□ -0.32
PDGFC-205ENST00000506880 SAMD9LQ8IVG5 1584 aa13.07□□□□□ -0.32
PDGFC-205ENST00000506880 SCAPERQ9BY12 1400 aa13.07□□□□□ -0.32
PDGFC-205ENST00000506880 KANK4Q5T7N3 995 aaPredicted RBP13.07□□□□□ -0.32
PDGFC-205ENST00000506880 RTEL1-TNFRSF6BF6WH68 1400 aa13.06□□□□□ -0.32
PDGFC-205ENST00000506880 REREQ9P2R6 1566 aa13.06□□□□□ -0.32
PDGFC-205ENST00000506880 FGD6Q6ZV73 1430 aa13.05□□□□□ -0.32
PDGFC-205ENST00000506880 CAMSAP2Q08AD1 1489 aa13.04□□□□□ -0.32
PDGFC-205ENST00000506880 FRMPD1Q5SYB0 1578 aa13.04□□□□□ -0.32
PDGFC-205ENST00000506880 HECW2Q9P2P5 1572 aa13.04□□□□□ -0.32
PDGFC-205ENST00000506880 CCDC141Q6ZP82 1450 aa13.04□□□□□ -0.32
PDGFC-205ENST00000506880 MBD5Q9P267 1494 aa13.04□□□□□ -0.32
PDGFC-205ENST00000506880 SHANK2Q9UPX8 1470 aa13.04□□□□□ -0.32
PDGFC-205ENST00000506880 MAST1Q9Y2H9 1570 aa13.03□□□□□ -0.32
PDGFC-205ENST00000506880 PTPN23Q9H3S7 1636 aa13.03□□□□□ -0.32
PDGFC-205ENST00000506880 MSH5O43196 834 aa13.03□□□□□ -0.32
PDGFC-205ENST00000506880 COL17A1Q9UMD9 1497 aaPredicted RBP13.03□□□□□ -0.32
PDGFC-205ENST00000506880 ARHGEF40Q8TER5 1519 aa13.03□□□□□ -0.32
PDGFC-205ENST00000506880 SYCP2Q9BX26 1530 aa13.02□□□□□ -0.33
PDGFC-205ENST00000506880 ZFYVE16Q7Z3T8 1539 aa13□□□□□ -0.33
PDGFC-205ENST00000506880 RRBP1Q9P2E9 1410 aaKnown RBP13□□□□□ -0.33
PDGFC-205ENST00000506880 DNMT1P26358 1616 aaKnown RBP12.99□□□□□ -0.33
PDGFC-205ENST00000506880 INO80Q9ULG1 1556 aaPredicted RBP12.99□□□□□ -0.33
PDGFC-205ENST00000506880 ADGBQ8N7X0 1667 aa12.99□□□□□ -0.33
PDGFC-205ENST00000506880 ARHGEF12Q9NZN5 1544 aa12.98□□□□□ -0.33
PDGFC-205ENST00000506880 TSPY4P0CV99 314 aa12.98□□□□□ -0.33
PDGFC-205ENST00000506880 TSPY10P0CW01 314 aa12.98□□□□□ -0.33
PDGFC-205ENST00000506880 PLPPR3Q6T4P5 718 aa12.98□□□□□ -0.33
PDGFC-205ENST00000506880 CROCC2H7BZ55 1655 aa12.98□□□□□ -0.33
PDGFC-205ENST00000506880 PLXNC1O60486 1568 aa12.98□□□□□ -0.33
PDGFC-205ENST00000506880 AGLP35573 1532 aa12.98□□□□□ -0.33
PDGFC-205ENST00000506880 ATP7AQ04656 1500 aa12.98□□□□□ -0.33
PDGFC-205ENST00000506880 FAM135AQ9P2D6 1515 aa12.98□□□□□ -0.33
PDGFC-205ENST00000506880 ATP10AO60312 1499 aa12.97□□□□□ -0.33
PDGFC-205ENST00000506880 KIDINS220Q9ULH0 1771 aa12.97□□□□□ -0.33
PDGFC-205ENST00000506880 ACIN1Q9UKV3 1341 aaKnown RBP12.97□□□□□ -0.33
PDGFC-205ENST00000506880 C9orf84Q5VXU9 1444 aa12.96□□□□□ -0.33
PDGFC-205ENST00000506880 TRAPPC8Q9Y2L5 1435 aa12.96□□□□□ -0.33
PDGFC-205ENST00000506880 SPAG9O60271 1321 aaKnown RBP12.96□□□□□ -0.33
PDGFC-205ENST00000506880 BCORL1Q5H9F3 1711 aa12.96□□□□□ -0.34
PDGFC-205ENST00000506880 RAPGEF3O95398 923 aa12.95□□□□□ -0.34
PDGFC-205ENST00000506880 ZNF777Q9ULD5 760 aaPredicted RBP12.95□□□□□ -0.34
PDGFC-205ENST00000506880 PPP6R1Q9UPN7 881 aa12.95□□□□□ -0.34
PDGFC-205ENST00000506880 ADGRL2O95490 1459 aa12.94□□□□□ -0.34
PDGFC-205ENST00000506880 ROCK1Q13464 1354 aa12.94□□□□□ -0.34
PDGFC-205ENST00000506880 DAPK1P53355 1430 aa12.93□□□□□ -0.34
PDGFC-205ENST00000506880 DIP2CQ9Y2E4 1556 aa12.93□□□□□ -0.34
PDGFC-205ENST00000506880 EIF2AK4Q9P2K8 1649 aaKnown RBP12.92□□□□□ -0.34
PDGFC-205ENST00000506880 HNRNPMP52272 730 aaKnown RBP eCLIP12.92□□□□□ -0.34
PDGFC-205ENST00000506880 AFAP1Q8N556 730 aa12.92□□□□□ -0.34
PDGFC-205ENST00000506880 ABCC5O15440 1437 aa12.91□□□□□ -0.34
PDGFC-205ENST00000506880 ANKRD30AQ9BXX3 1397 aa12.91□□□□□ -0.34
PDGFC-205ENST00000506880 ABCA6Q8N139 1617 aa12.91□□□□□ -0.34
PDGFC-205ENST00000506880 DUOX2Q9NRD8 1548 aa12.9□□□□□ -0.34
PDGFC-205ENST00000506880 ZNF644Q9H582 1327 aaPredicted RBP12.89□□□□□ -0.35
PDGFC-205ENST00000506880 DHX29Q7Z478 1369 aaKnown RBP12.89□□□□□ -0.35
PDGFC-205ENST00000506880 A2MP01023 1474 aa12.89□□□□□ -0.35
PDGFC-205ENST00000506880 ERBINQ96RT1 1412 aa12.88□□□□□ -0.35
PDGFC-205ENST00000506880 NCOA1Q15788 1441 aa12.87□□□□□ -0.35
PDGFC-205ENST00000506880 YEATS2Q9ULM3 1422 aa12.87□□□□□ -0.35
PDGFC-205ENST00000506880 CNTLNQ9NXG0 1405 aa12.86□□□□□ -0.35
PDGFC-205ENST00000506880 RNF17Q9BXT8 1623 aaKnown RBP12.84□□□□□ -0.35
PDGFC-205ENST00000506880 FAM50AQ14320 339 aaKnown RBP12.84□□□□□ -0.35
PDGFC-205ENST00000506880 ADAMTSL3P82987 1691 aa12.83□□□□□ -0.35
PDGFC-205ENST00000506880 MYT1LQ9UL68 1186 aa12.83□□□□□ -0.36
PDGFC-205ENST00000506880 MROH2AA6NES4 1674 aa12.83□□□□□ -0.36
PDGFC-205ENST00000506880 ZC3H13Q5T200 1668 aaKnown RBP12.83□□□□□ -0.36
PDGFC-205ENST00000506880 KIF15Q9NS87 1388 aa12.82□□□□□ -0.36
PDGFC-205ENST00000506880 SETD1BQ9UPS6 1966 aaKnown RBP12.82□□□□□ -0.36
PDGFC-205ENST00000506880 PIAS4Q8N2W9 510 aaPredicted RBP12.82□□□□□ -0.36
PDGFC-205ENST00000506880 KDM5DQ9BY66 1539 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms