RNA–Protein interactions for RNA: ENST00000506368.5

SCLT1-208, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 2,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-208ENST00000506368 EFCAB5A4FU69 1503 aa21.76■■□□□ 1.07
SCLT1-208ENST00000506368 ZBED9Q6R2W3 1325 aa21.74■■□□□ 1.07
SCLT1-208ENST00000506368 HIRIP3Q9BW71 556 aaPredicted RBP21.73■■□□□ 1.07
SCLT1-208ENST00000506368 PTPRGP23470 1445 aa21.72■■□□□ 1.07
SCLT1-208ENST00000506368 CNTLNQ9NXG0 1405 aa21.72■■□□□ 1.07
SCLT1-208ENST00000506368 PTPN23Q9H3S7 1636 aa21.72■■□□□ 1.07
SCLT1-208ENST00000506368 CASKIN1Q8WXD9 1431 aa21.71■■□□□ 1.07
SCLT1-208ENST00000506368 KDM5BQ9UGL1 1544 aa21.71■■□□□ 1.07
SCLT1-208ENST00000506368 FGD6Q6ZV73 1430 aa21.69■■□□□ 1.06
SCLT1-208ENST00000506368 IRX6P78412 446 aaPredicted RBP21.67■■□□□ 1.06
SCLT1-208ENST00000506368 PLB1Q6P1J6 1458 aa21.67■■□□□ 1.06
SCLT1-208ENST00000506368 ANP32AP39687 249 aaKnown RBP21.64■■□□□ 1.05
SCLT1-208ENST00000506368 RTL5Q5HYW3 569 aaPredicted RBP21.63■■□□□ 1.05
SCLT1-208ENST00000506368 WASHC2AQ641Q2 1341 aa21.63■■□□□ 1.05
SCLT1-208ENST00000506368 FMN1Q68DA7 1419 aa21.62■■□□□ 1.05
SCLT1-208ENST00000506368 ARID3CA6NKF2 412 aa21.62■■□□□ 1.05
SCLT1-208ENST00000506368 IPO9Q96P70 1041 aaKnown RBP21.6■■□□□ 1.05
SCLT1-208ENST00000506368 ADCY10Q96PN6 1610 aa21.6■■□□□ 1.05
SCLT1-208ENST00000506368 HECW1Q76N89 1606 aa21.59■■□□□ 1.05
SCLT1-208ENST00000506368 EIF4G2P78344 907 aaKnown RBP eCLIP21.59■■□□□ 1.05
SCLT1-208ENST00000506368 NAIPQ13075 1403 aa21.58■■□□□ 1.05
SCLT1-208ENST00000506368 POLR1AO95602 1720 aaPredicted RBP21.58■■□□□ 1.05
SCLT1-208ENST00000506368 B4GALNT3Q6L9W6 998 aa21.58■■□□□ 1.05
SCLT1-208ENST00000506368 SMG6Q86US8 1419 aaKnown RBP21.58■■□□□ 1.04
SCLT1-208ENST00000506368 ABCA8O94911 1581 aa21.57■■□□□ 1.04
SCLT1-208ENST00000506368 NCOA1Q15788 1441 aa21.57■■□□□ 1.04
SCLT1-208ENST00000506368 PRKRIP1Q9H875 184 aaPredicted RBP21.57■■□□□ 1.04
SCLT1-208ENST00000506368 ATP1B4Q9UN42 357 aaPredicted RBP21.56■■□□□ 1.04
SCLT1-208ENST00000506368 HSPA5P11021 654 aaKnown RBP21.56■■□□□ 1.04
SCLT1-208ENST00000506368 RAPGEF6Q8TEU7 1601 aa21.55■■□□□ 1.04
SCLT1-208ENST00000506368 AKNAQ7Z591 1439 aa21.55■■□□□ 1.04
SCLT1-208ENST00000506368 RNF123Q5XPI4 1314 aa21.54■■□□□ 1.04
SCLT1-208ENST00000506368 ZBTB47Q9UFB7 747 aaPredicted RBP21.53■■□□□ 1.04
SCLT1-208ENST00000506368 ABCC2Q92887 1545 aa21.53■■□□□ 1.04
SCLT1-208ENST00000506368 GCC2Q8IWJ2 1684 aa21.53■■□□□ 1.04
SCLT1-208ENST00000506368 USP35Q9P2H5 1018 aa21.52■■□□□ 1.04
SCLT1-208ENST00000506368 CCDC7Q96M83 1385 aa21.51■■□□□ 1.03
SCLT1-208ENST00000506368 NUP153P49790 1475 aaKnown RBP21.5■■□□□ 1.03
SCLT1-208ENST00000506368 NBR1Q14596 966 aa21.49■■□□□ 1.03
SCLT1-208ENST00000506368 MRS2Q9HD23 443 aa21.49■■□□□ 1.03
SCLT1-208ENST00000506368 LRRIQ1Q96JM4 1722 aa21.49■■□□□ 1.03
SCLT1-208ENST00000506368 MYOM3Q5VTT5 1437 aa21.49■■□□□ 1.03
SCLT1-208ENST00000506368 PAK3O75914 559 aaPredicted RBP21.49■■□□□ 1.03
SCLT1-208ENST00000506368 PTPRKQ15262 1439 aa21.48■■□□□ 1.03
SCLT1-208ENST00000506368 UHRF1BP1LA0JNW5 1464 aa21.48■■□□□ 1.03
SCLT1-208ENST00000506368 SUPT6HQ7KZ85 1726 aaKnown RBP21.47■■□□□ 1.03
SCLT1-208ENST00000506368 ZCCHC11Q5TAX3 1644 aaKnown RBP21.45■■□□□ 1.02
SCLT1-208ENST00000506368 CDK13Q14004 1512 aaKnown RBP21.45■■□□□ 1.02
SCLT1-208ENST00000506368 EHBP1L1Q8N3D4 1523 aa21.45■■□□□ 1.02
SCLT1-208ENST00000506368 MTUS2Q5JR59 1369 aa21.45■■□□□ 1.02
SCLT1-208ENST00000506368 NUDCQ9Y266 331 aa21.44■■□□□ 1.02
SCLT1-208ENST00000506368 ATP10BO94823 1461 aa21.43■■□□□ 1.02
SCLT1-208ENST00000506368 FAM9BQ8IZU0 186 aa21.43■■□□□ 1.02
SCLT1-208ENST00000506368 CCDC136Q96JN2 1154 aa21.43■■□□□ 1.02
SCLT1-208ENST00000506368 TCOF1Q13428 1488 aaKnown RBP21.41■■□□□ 1.02
SCLT1-208ENST00000506368 NPM1P06748 294 aaKnown RBP eCLIP21.4■■□□□ 1.02
SCLT1-208ENST00000506368 CCDC184Q52MB2 194 aa21.4■■□□□ 1.02
SCLT1-208ENST00000506368 EPRSP07814 1512 aaKnown RBP21.39■■□□□ 1.01
SCLT1-208ENST00000506368 C11orf95C9JLR9 678 aaPredicted RBP21.38■■□□□ 1.01
SCLT1-208ENST00000506368 DENND4BO75064 1496 aaPredicted RBP21.34■■□□□ 1.01
SCLT1-208ENST00000506368 SPATA31E1Q6ZUB1 1445 aa21.34■■□□□ 1.01
SCLT1-208ENST00000506368 MIA2Q96PC5 1412 aa21.34■■□□□ 1.01
SCLT1-208ENST00000506368 PPM1GO15355 546 aaPredicted RBP21.33■■□□□ 1.01
SCLT1-208ENST00000506368 ANO8Q9HCE9 1232 aaPredicted RBP21.33■■□□□ 1.01
SCLT1-208ENST00000506368 ASXL2Q76L83 1435 aa21.33■■□□□ 1.01
SCLT1-208ENST00000506368 TCERG1O14776 1098 aaKnown RBP21.33■■□□□ 1
SCLT1-208ENST00000506368 ARID4BQ4LE39 1312 aaPredicted RBP21.32■■□□□ 1
SCLT1-208ENST00000506368 RPRD2Q5VT52 1461 aaKnown RBP21.31■■□□□ 1
SCLT1-208ENST00000506368 WASHC2CQ9Y4E1 1318 aa21.3■■□□□ 1
SCLT1-208ENST00000506368 MAGI3Q5TCQ9 1506 aa21.29■■□□□ 1
SCLT1-208ENST00000506368 MS4A1P11836 297 aa21.28■■□□□ 1
SCLT1-208ENST00000506368 KIF7Q2M1P5 1343 aa21.27■■□□□ 1
SCLT1-208ENST00000506368 TEX14Q8IWB6 1497 aa21.26■□□□□ 0.99
SCLT1-208ENST00000506368 L3MBTL2Q969R5 705 aa21.25■□□□□ 0.99
SCLT1-208ENST00000506368 WDR7Q9Y4E6 1490 aa21.25■□□□□ 0.99
SCLT1-208ENST00000506368 PLEKHD1A6NEE1 506 aa21.24■□□□□ 0.99
SCLT1-208ENST00000506368 MPHOSPH9Q99550 1183 aa21.24■□□□□ 0.99
SCLT1-208ENST00000506368 SALL2Q9Y467 1007 aaPredicted RBP21.24■□□□□ 0.99
SCLT1-208ENST00000506368 ROCK2O75116 1388 aaKnown RBP21.22■□□□□ 0.99
SCLT1-208ENST00000506368 KTN1Q86UP2 1357 aaKnown RBP21.22■□□□□ 0.99
SCLT1-208ENST00000506368 DHX29Q7Z478 1369 aaKnown RBP21.21■□□□□ 0.99
SCLT1-208ENST00000506368 TRHP20396 242 aaPredicted RBP21.2■□□□□ 0.99
SCLT1-208ENST00000506368 DDRGK1Q96HY6 314 aa21.2■□□□□ 0.99
SCLT1-208ENST00000506368 KIF13AQ9H1H9 1805 aa21.2■□□□□ 0.98
SCLT1-208ENST00000506368 ANKRD30BQ9BXX2 1392 aa21.2■□□□□ 0.98
SCLT1-208ENST00000506368 KIF14Q15058 1648 aa21.2■□□□□ 0.98
SCLT1-208ENST00000506368 DIP2BQ9P265 1576 aa21.19■□□□□ 0.98
SCLT1-208ENST00000506368 ROCK1Q13464 1354 aa21.19■□□□□ 0.98
SCLT1-208ENST00000506368 NEFMP07197 916 aa21.19■□□□□ 0.98
SCLT1-208ENST00000506368 FAM69CQ0P6D2 419 aa21.18■□□□□ 0.98
SCLT1-208ENST00000506368 IL27Q8NEV9 243 aa21.17■□□□□ 0.98
SCLT1-208ENST00000506368 TROQ12816 1431 aaPredicted RBP21.17■□□□□ 0.98
SCLT1-208ENST00000506368 ABCC10Q5T3U5 1492 aa21.17■□□□□ 0.98
SCLT1-208ENST00000506368 BACH2Q9BYV9 841 aa21.14■□□□□ 0.98
SCLT1-208ENST00000506368 UBE2Q2Q8WVN8 375 aa21.14■□□□□ 0.97
SCLT1-208ENST00000506368 KDM6BO15054 1643 aa21.14■□□□□ 0.97
SCLT1-208ENST00000506368 LRPPRCP42704 1394 aaKnown RBP21.13■□□□□ 0.97
SCLT1-208ENST00000506368 PDE4AP27815 886 aa21.13■□□□□ 0.97
SCLT1-208ENST00000506368 TSPOAP1O95153 1857 aa21.13■□□□□ 0.97
SCLT1-208ENST00000506368 TTC37Q6PGP7 1564 aa21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms