RNA–Protein interactions for RNA: ENST00000505886.5

PDLIM3-206, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4

Gene PDLIM3, Length 571 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-206ENST00000505886 EHBP1L1Q8N3D4 1523 aa24.59■■□□□ 1.53
PDLIM3-206ENST00000505886 SCAPERQ9BY12 1400 aa24.58■■□□□ 1.53
PDLIM3-206ENST00000505886 POGZQ7Z3K3 1410 aa24.56■■□□□ 1.52
PDLIM3-206ENST00000505886 CCNB3Q8WWL7 1395 aa24.55■■□□□ 1.52
PDLIM3-206ENST00000505886 ZMYM4Q5VZL5 1548 aa24.55■■□□□ 1.52
PDLIM3-206ENST00000505886 ZNF518AQ6AHZ1 1483 aa24.54■■□□□ 1.52
PDLIM3-206ENST00000505886 GPATCH8Q9UKJ3 1502 aaKnown RBP24.53■■□□□ 1.52
PDLIM3-206ENST00000505886 PREX2Q70Z35 1606 aa24.53■■□□□ 1.52
PDLIM3-206ENST00000505886 PLEKHH2Q8IVE3 1493 aa24.51■■□□□ 1.51
PDLIM3-206ENST00000505886 FRMPD1Q5SYB0 1578 aa24.51■■□□□ 1.51
PDLIM3-206ENST00000505886 APLP2Q06481 763 aa24.51■■□□□ 1.51
PDLIM3-206ENST00000505886 TIAM1Q13009 1591 aa24.5■■□□□ 1.51
PDLIM3-206ENST00000505886 KDM4FA0A1W2PPD8 638 aa24.5■■□□□ 1.51
PDLIM3-206ENST00000505886 CFDP1Q9UEE9 299 aaPredicted RBP24.5■■□□□ 1.51
PDLIM3-206ENST00000505886 KIAA1107Q9UPP5 1409 aa24.49■■□□□ 1.51
PDLIM3-206ENST00000505886 RICTORQ6R327 1708 aa24.47■■□□□ 1.51
PDLIM3-206ENST00000505886 LRRC9Q6ZRR7 1453 aa24.46■■□□□ 1.51
PDLIM3-206ENST00000505886 ARHGEF40Q8TER5 1519 aa24.44■■□□□ 1.5
PDLIM3-206ENST00000505886 ABCC1P33527 1531 aa24.43■■□□□ 1.5
PDLIM3-206ENST00000505886 KDM5CP41229 1560 aa24.42■■□□□ 1.5
PDLIM3-206ENST00000505886 ZFYVE16Q7Z3T8 1539 aa24.42■■□□□ 1.5
PDLIM3-206ENST00000505886 CDC42BPBQ9Y5S2 1711 aa24.42■■□□□ 1.5
PDLIM3-206ENST00000505886 MLH3Q9UHC1 1453 aa24.42■■□□□ 1.5
PDLIM3-206ENST00000505886 RSPH4AQ5TD94 716 aa24.41■■□□□ 1.5
PDLIM3-206ENST00000505886 NCOA2Q15596 1464 aa24.4■■□□□ 1.5
PDLIM3-206ENST00000505886 CDC42BPAQ5VT25 1732 aa24.4■■□□□ 1.5
PDLIM3-206ENST00000505886 SUPT6HQ7KZ85 1726 aaKnown RBP24.39■■□□□ 1.5
PDLIM3-206ENST00000505886 AFAP1Q8N556 730 aa24.39■■□□□ 1.49
PDLIM3-206ENST00000505886 ATP10AO60312 1499 aa24.38■■□□□ 1.49
PDLIM3-206ENST00000505886 ITSN2Q9NZM3 1697 aa24.37■■□□□ 1.49
PDLIM3-206ENST00000505886 ZNF777Q9ULD5 760 aaPredicted RBP24.37■■□□□ 1.49
PDLIM3-206ENST00000505886 C9orf84Q5VXU9 1444 aa24.34■■□□□ 1.49
PDLIM3-206ENST00000505886 TRAPPC8Q9Y2L5 1435 aa24.34■■□□□ 1.49
PDLIM3-206ENST00000505886 ARHGEF12Q9NZN5 1544 aa24.33■■□□□ 1.49
PDLIM3-206ENST00000505886 YEATS2Q9ULM3 1422 aa24.33■■□□□ 1.49
PDLIM3-206ENST00000505886 SAMD9LQ8IVG5 1584 aa24.33■■□□□ 1.48
PDLIM3-206ENST00000505886 ARID4BQ4LE39 1312 aaPredicted RBP24.33■■□□□ 1.48
PDLIM3-206ENST00000505886 MIA2Q96PC5 1412 aa24.32■■□□□ 1.48
PDLIM3-206ENST00000505886 HECW2Q9P2P5 1572 aa24.32■■□□□ 1.48
PDLIM3-206ENST00000505886 REREQ9P2R6 1566 aa24.3■■□□□ 1.48
PDLIM3-206ENST00000505886 KANK4Q5T7N3 995 aaPredicted RBP24.3■■□□□ 1.48
PDLIM3-206ENST00000505886 SPAG9O60271 1321 aaKnown RBP24.3■■□□□ 1.48
PDLIM3-206ENST00000505886 MYT1LQ9UL68 1186 aa24.29■■□□□ 1.48
PDLIM3-206ENST00000505886 SYCP2Q9BX26 1530 aa24.28■■□□□ 1.48
PDLIM3-206ENST00000505886 HNRNPMP52272 730 aaKnown RBP eCLIP24.27■■□□□ 1.48
PDLIM3-206ENST00000505886 RTEL1-TNFRSF6BF6WH68 1400 aa24.27■■□□□ 1.48
PDLIM3-206ENST00000505886 MBD5Q9P267 1494 aa24.26■■□□□ 1.47
PDLIM3-206ENST00000505886 MYOM3Q5VTT5 1437 aa24.26■■□□□ 1.47
PDLIM3-206ENST00000505886 AGLP35573 1532 aa24.22■■□□□ 1.47
PDLIM3-206ENST00000505886 CAMSAP2Q08AD1 1489 aa24.2■■□□□ 1.47
PDLIM3-206ENST00000505886 CCDC141Q6ZP82 1450 aa24.2■■□□□ 1.47
PDLIM3-206ENST00000505886 ZNF644Q9H582 1327 aaPredicted RBP24.2■■□□□ 1.46
PDLIM3-206ENST00000505886 DIP2CQ9Y2E4 1556 aa24.2■■□□□ 1.46
PDLIM3-206ENST00000505886 BCORL1Q5H9F3 1711 aa24.19■■□□□ 1.46
PDLIM3-206ENST00000505886 ADAMTSL3P82987 1691 aa24.19■■□□□ 1.46
PDLIM3-206ENST00000505886 TSPY4P0CV99 314 aa24.19■■□□□ 1.46
PDLIM3-206ENST00000505886 TSPY10P0CW01 314 aa24.19■■□□□ 1.46
PDLIM3-206ENST00000505886 ATP7AQ04656 1500 aa24.18■■□□□ 1.46
PDLIM3-206ENST00000505886 ARHGEF5Q12774 1597 aa24.17■■□□□ 1.46
PDLIM3-206ENST00000505886 INO80Q9ULG1 1556 aaPredicted RBP24.15■■□□□ 1.46
PDLIM3-206ENST00000505886 KIDINS220Q9ULH0 1771 aa24.14■■□□□ 1.46
PDLIM3-206ENST00000505886 PPP6R1Q9UPN7 881 aa24.14■■□□□ 1.45
PDLIM3-206ENST00000505886 PTPRMP28827 1452 aa24.13■■□□□ 1.45
PDLIM3-206ENST00000505886 ABCA6Q8N139 1617 aa24.13■■□□□ 1.45
PDLIM3-206ENST00000505886 A2MP01023 1474 aa24.1■■□□□ 1.45
PDLIM3-206ENST00000505886 FGD6Q6ZV73 1430 aa24.09■■□□□ 1.45
PDLIM3-206ENST00000505886 CNTLNQ9NXG0 1405 aa24.08■■□□□ 1.44
PDLIM3-206ENST00000505886 DHX29Q7Z478 1369 aaKnown RBP24.07■■□□□ 1.44
PDLIM3-206ENST00000505886 ESF1Q9H501 851 aaKnown RBP24.07■■□□□ 1.44
PDLIM3-206ENST00000505886 PLXNC1O60486 1568 aa24.06■■□□□ 1.44
PDLIM3-206ENST00000505886 TCOF1Q13428 1488 aaKnown RBP24.06■■□□□ 1.44
PDLIM3-206ENST00000505886 MADDQ8WXG6 1647 aa24.05■■□□□ 1.44
PDLIM3-206ENST00000505886 MLECQ14165 292 aa24.04■■□□□ 1.44
PDLIM3-206ENST00000505886 SHANK2Q9UPX8 1470 aa24.03■■□□□ 1.44
PDLIM3-206ENST00000505886 MAST1Q9Y2H9 1570 aa24.03■■□□□ 1.44
PDLIM3-206ENST00000505886 ADGBQ8N7X0 1667 aa24.02■■□□□ 1.44
PDLIM3-206ENST00000505886 SIGLEC1Q9BZZ2 1709 aa24.01■■□□□ 1.43
PDLIM3-206ENST00000505886 FAM135AQ9P2D6 1515 aa23.99■■□□□ 1.43
PDLIM3-206ENST00000505886 PTPN23Q9H3S7 1636 aa23.99■■□□□ 1.43
PDLIM3-206ENST00000505886 ABCC5O15440 1437 aa23.95■■□□□ 1.42
PDLIM3-206ENST00000505886 DAPK1P53355 1430 aa23.94■■□□□ 1.42
PDLIM3-206ENST00000505886 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.94■■□□□ 1.42
PDLIM3-206ENST00000505886 FER1L4A9Z1Z3 1794 aa23.93■■□□□ 1.42
PDLIM3-206ENST00000505886 RIMS1Q86UR5 1692 aaKnown RBP23.93■■□□□ 1.42
PDLIM3-206ENST00000505886 ANKRD30AQ9BXX3 1397 aa23.91■■□□□ 1.42
PDLIM3-206ENST00000505886 DNMT1P26358 1616 aaKnown RBP23.9■■□□□ 1.42
PDLIM3-206ENST00000505886 DUOX2Q9NRD8 1548 aa23.89■■□□□ 1.42
PDLIM3-206ENST00000505886 KIF3BO15066 747 aa23.89■■□□□ 1.41
PDLIM3-206ENST00000505886 GGT6Q6P531 493 aa23.89■■□□□ 1.41
PDLIM3-206ENST00000505886 NPATQ14207 1427 aa23.89■■□□□ 1.41
PDLIM3-206ENST00000505886 ERBINQ96RT1 1412 aa23.88■■□□□ 1.41
PDLIM3-206ENST00000505886 ZMYM3Q14202 1370 aa23.87■■□□□ 1.41
PDLIM3-206ENST00000505886 KIF15Q9NS87 1388 aa23.87■■□□□ 1.41
PDLIM3-206ENST00000505886 FAM50AQ14320 339 aaKnown RBP23.86■■□□□ 1.41
PDLIM3-206ENST00000505886 MROH2AA6NES4 1674 aa23.85■■□□□ 1.41
PDLIM3-206ENST00000505886 EIF2AK4Q9P2K8 1649 aaKnown RBP23.84■■□□□ 1.41
PDLIM3-206ENST00000505886 NCOA1Q15788 1441 aa23.84■■□□□ 1.41
PDLIM3-206ENST00000505886 ADGRL2O95490 1459 aa23.83■■□□□ 1.41
PDLIM3-206ENST00000505886 WASHC2CQ9Y4E1 1318 aa23.82■■□□□ 1.4
PDLIM3-206ENST00000505886 LMTK3Q96Q04 1460 aa23.81■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms