RNA–Protein interactions for RNA: ENST00000505237.2

PLXND1-208, Transcript of plexin D1, human

TSL 5

Gene PLXND1, Length 507 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PLXND1-208	ENST00000505237	CCDC18	Q5T9S5	1454 aa		32.21	■■■□□ 2.75
PLXND1-208	ENST00000505237	BCORL1	Q5H9F3	1711 aa		32.2	■■■□□ 2.75
PLXND1-208	ENST00000505237	LRRIQ1	Q96JM4	1722 aa		32.2	■■■□□ 2.75
PLXND1-208	ENST00000505237	MYO5C	Q9NQX4	1742 aa		32.2	■■■□□ 2.75
PLXND1-208	ENST00000505237	PCF11	O94913	1555 aa	Known RBP	32.19	■■■□□ 2.74
PLXND1-208	ENST00000505237	ZFYVE16	Q7Z3T8	1539 aa		32.19	■■■□□ 2.74
PLXND1-208	ENST00000505237	YEATS2	Q9ULM3	1422 aa		32.18	■■■□□ 2.74
PLXND1-208	ENST00000505237	FYCO1	Q9BQS8	1478 aa		32.14	■■■□□ 2.74
PLXND1-208	ENST00000505237	ARHGAP5	Q13017	1502 aa		32.13	■■■□□ 2.73
PLXND1-208	ENST00000505237	MADD	Q8WXG6	1647 aa		32.11	■■■□□ 2.73
PLXND1-208	ENST00000505237	ZNF518A	Q6AHZ1	1483 aa		32.07	■■■□□ 2.72
PLXND1-208	ENST00000505237	ATP10A	O60312	1499 aa		32.04	■■■□□ 2.72
PLXND1-208	ENST00000505237	AFAP1	Q8N556	730 aa		32.02	■■■□□ 2.72
PLXND1-208	ENST00000505237	SIGLEC1	Q9BZZ2	1709 aa		32.02	■■■□□ 2.72
PLXND1-208	ENST00000505237	KDM5C	P41229	1560 aa		32	■■■□□ 2.71
PLXND1-208	ENST00000505237	CDC42BPB	Q9Y5S2	1711 aa		32	■■■□□ 2.71
PLXND1-208	ENST00000505237	C9orf84	Q5VXU9	1444 aa		32	■■■□□ 2.71
PLXND1-208	ENST00000505237	PREX2	Q70Z35	1606 aa		31.99	■■■□□ 2.71
PLXND1-208	ENST00000505237	RIMS1	Q86UR5	1692 aa	Known RBP	31.97	■■■□□ 2.71
PLXND1-208	ENST00000505237	MLEC	Q14165	292 aa		31.94	■■■□□ 2.7
PLXND1-208	ENST00000505237	ABCC1	P33527	1531 aa		31.92	■■■□□ 2.7
PLXND1-208	ENST00000505237	MLH3	Q9UHC1	1453 aa		31.91	■■■□□ 2.7
PLXND1-208	ENST00000505237	ARHGEF12	Q9NZN5	1544 aa		31.9	■■■□□ 2.7
PLXND1-208	ENST00000505237	TRAPPC8	Q9Y2L5	1435 aa		31.9	■■■□□ 2.7
PLXND1-208	ENST00000505237	MYT1L	Q9UL68	1186 aa		31.89	■■■□□ 2.7
PLXND1-208	ENST00000505237	LMTK3	Q96Q04	1460 aa		31.89	■■■□□ 2.7
PLXND1-208	ENST00000505237	CDC42BPA	Q5VT25	1732 aa		31.88	■■■□□ 2.69
PLXND1-208	ENST00000505237	GPATCH8	Q9UKJ3	1502 aa	Known RBP	31.86	■■■□□ 2.69
PLXND1-208	ENST00000505237	DIP2C	Q9Y2E4	1556 aa		31.85	■■■□□ 2.69
PLXND1-208	ENST00000505237	CEP162	Q5TB80	1403 aa		31.84	■■■□□ 2.69
PLXND1-208	ENST00000505237	ILDR1	Q86SU0	546 aa	Predicted RBP	31.84	■■■□□ 2.69
PLXND1-208	ENST00000505237	RERE	Q9P2R6	1566 aa		31.84	■■■□□ 2.69
PLXND1-208	ENST00000505237	ITSN2	Q9NZM3	1697 aa		31.83	■■■□□ 2.69
PLXND1-208	ENST00000505237	FER1L4	A9Z1Z3	1794 aa		31.82	■■■□□ 2.68
PLXND1-208	ENST00000505237	PLPPR3	Q6T4P5	718 aa		31.82	■■■□□ 2.68
PLXND1-208	ENST00000505237	MTUS2	Q5JR59	1369 aa		31.81	■■■□□ 2.68
PLXND1-208	ENST00000505237	ZNF777	Q9ULD5	760 aa	Predicted RBP	31.8	■■■□□ 2.68
PLXND1-208	ENST00000505237	ABCA6	Q8N139	1617 aa		31.78	■■■□□ 2.68
PLXND1-208	ENST00000505237	CFDP1	Q9UEE9	299 aa	Predicted RBP	31.77	■■■□□ 2.68
PLXND1-208	ENST00000505237	CCNB3	Q8WWL7	1395 aa		31.77	■■■□□ 2.68
PLXND1-208	ENST00000505237	SAMD9L	Q8IVG5	1584 aa		31.77	■■■□□ 2.68
PLXND1-208	ENST00000505237	AGL	P35573	1532 aa		31.74	■■■□□ 2.67
PLXND1-208	ENST00000505237	KIAA1107	Q9UPP5	1409 aa		31.74	■■■□□ 2.67
PLXND1-208	ENST00000505237	PLEKHH2	Q8IVE3	1493 aa		31.72	■■■□□ 2.67
PLXND1-208	ENST00000505237	SYCP2	Q9BX26	1530 aa		31.72	■■■□□ 2.67
PLXND1-208	ENST00000505237	KIDINS220	Q9ULH0	1771 aa		31.71	■■■□□ 2.67
PLXND1-208	ENST00000505237	HNRNPM	P52272	730 aa	Known RBP eCLIP	31.71	■■■□□ 2.67
PLXND1-208	ENST00000505237	HSPA2	P54652	639 aa		31.69	■■■□□ 2.66
PLXND1-208	ENST00000505237	SPAG9	O60271	1321 aa	Known RBP	31.69	■■■□□ 2.66
PLXND1-208	ENST00000505237	EHBP1L1	Q8N3D4	1523 aa		31.69	■■■□□ 2.66
PLXND1-208	ENST00000505237	CEBPA	P49715	358 aa	Predicted RBP	31.68	■■■□□ 2.66
PLXND1-208	ENST00000505237	TIAM1	Q13009	1591 aa		31.62	■■■□□ 2.65
PLXND1-208	ENST00000505237	LOC105371045	A0A1W2PR82	267 aa		31.6	■■■□□ 2.65
PLXND1-208	ENST00000505237	ESF1	Q9H501	851 aa	Known RBP	31.6	■■■□□ 2.65
PLXND1-208	ENST00000505237	ATP7A	Q04656	1500 aa		31.59	■■■□□ 2.65
PLXND1-208	ENST00000505237	ZNF644	Q9H582	1327 aa	Predicted RBP	31.57	■■■□□ 2.64
PLXND1-208	ENST00000505237	PREX1	Q8TCU6	1659 aa		31.56	■■■□□ 2.64
PLXND1-208	ENST00000505237	CNTLN	Q9NXG0	1405 aa		31.56	■■■□□ 2.64
PLXND1-208	ENST00000505237	INO80	Q9ULG1	1556 aa	Predicted RBP	31.56	■■■□□ 2.64
PLXND1-208	ENST00000505237	MBD5	Q9P267	1494 aa		31.53	■■■□□ 2.64
PLXND1-208	ENST00000505237	VPS8	Q8N3P4	1428 aa		31.52	■■■□□ 2.64
PLXND1-208	ENST00000505237	NCOA2	Q15596	1464 aa		31.52	■■■□□ 2.64
PLXND1-208	ENST00000505237	UHRF1BP1	Q6BDS2	1440 aa		31.51	■■■□□ 2.64
PLXND1-208	ENST00000505237	A2M	P01023	1474 aa		31.51	■■■□□ 2.63
PLXND1-208	ENST00000505237	SETD1B	Q9UPS6	1966 aa	Known RBP	31.5	■■■□□ 2.63
PLXND1-208	ENST00000505237	C3	P01024	1663 aa		31.49	■■■□□ 2.63
PLXND1-208	ENST00000505237	PLXNC1	O60486	1568 aa		31.49	■■■□□ 2.63
PLXND1-208	ENST00000505237	FBXO41	Q8TF61	875 aa		31.48	■■■□□ 2.63
PLXND1-208	ENST00000505237	SUPT6H	Q7KZ85	1726 aa	Known RBP	31.46	■■■□□ 2.63
PLXND1-208	ENST00000505237	RTEL1-TNFRSF6B	F6WH68	1400 aa		31.45	■■■□□ 2.63
PLXND1-208	ENST00000505237	RSPH4A	Q5TD94	716 aa		31.41	■■■□□ 2.62
PLXND1-208	ENST00000505237	ZMYM3	Q14202	1370 aa		31.41	■■■□□ 2.62
PLXND1-208	ENST00000505237	LRRC9	Q6ZRR7	1453 aa		31.4	■■■□□ 2.62
PLXND1-208	ENST00000505237	CAMSAP2	Q08AD1	1489 aa		31.4	■■■□□ 2.62
PLXND1-208	ENST00000505237	NPAT	Q14207	1427 aa		31.39	■■■□□ 2.62
PLXND1-208	ENST00000505237	MROH2A	A6NES4	1674 aa		31.38	■■■□□ 2.61
PLXND1-208	ENST00000505237	ADGB	Q8N7X0	1667 aa		31.38	■■■□□ 2.61
PLXND1-208	ENST00000505237	PPP6R1	Q9UPN7	881 aa		31.38	■■■□□ 2.61
PLXND1-208	ENST00000505237	CCDC141	Q6ZP82	1450 aa		31.38	■■■□□ 2.61
PLXND1-208	ENST00000505237	DMRT2	Q9Y5R5	561 aa		31.37	■■■□□ 2.61
PLXND1-208	ENST00000505237	MAP3K1	Q13233	1512 aa		31.36	■■■□□ 2.61
PLXND1-208	ENST00000505237	GGT6	Q6P531	493 aa		31.36	■■■□□ 2.61
PLXND1-208	ENST00000505237	DHX29	Q7Z478	1369 aa	Known RBP	31.35	■■■□□ 2.61
PLXND1-208	ENST00000505237	STRC	Q7RTU9	1775 aa		31.31	■■■□□ 2.6
PLXND1-208	ENST00000505237	KANK4	Q5T7N3	995 aa	Predicted RBP	31.3	■■■□□ 2.6
PLXND1-208	ENST00000505237	CLTC	Q00610	1675 aa	Known RBP	31.29	■■■□□ 2.6
PLXND1-208	ENST00000505237	ARHGEF5	Q12774	1597 aa		31.28	■■■□□ 2.6
PLXND1-208	ENST00000505237	CERK	Q8TCT0	537 aa		31.27	■■■□□ 2.6
PLXND1-208	ENST00000505237	TSPY4	P0CV99	314 aa		31.25	■■■□□ 2.59
PLXND1-208	ENST00000505237	TSPY10	P0CW01	314 aa		31.25	■■■□□ 2.59
PLXND1-208	ENST00000505237	PTPRK	Q15262	1439 aa		31.24	■■■□□ 2.59
PLXND1-208	ENST00000505237	PTPRT	O14522	1441 aa		31.24	■■■□□ 2.59
PLXND1-208	ENST00000505237	KIF3B	O15066	747 aa		31.22	■■■□□ 2.59
PLXND1-208	ENST00000505237	NCOA1	Q15788	1441 aa		31.22	■■■□□ 2.59
PLXND1-208	ENST00000505237	MIA2	Q96PC5	1412 aa		31.2	■■■□□ 2.59
PLXND1-208	ENST00000505237	MYOM3	Q5VTT5	1437 aa		31.19	■■■□□ 2.58
PLXND1-208	ENST00000505237	FAM135A	Q9P2D6	1515 aa		31.15	■■■□□ 2.58
PLXND1-208	ENST00000505237	CAMSAP1	Q5T5Y3	1602 aa		31.14	■■■□□ 2.58
PLXND1-208	ENST00000505237	APLP2	Q06481	763 aa		31.13	■■■□□ 2.57
PLXND1-208	ENST00000505237	MAST1	Q9Y2H9	1570 aa		31.12	■■■□□ 2.57

Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms