RNA–Protein interactions for RNA: ENST00000505065.1

CDC42SE2-208, Transcript of CDC42 small effector 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDC42SE2, Length 4,352 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE2-208ENST00000505065 PTPN23Q9H3S7 1636 aa13.29□□□□□ -0.28
CDC42SE2-208ENST00000505065 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.28□□□□□ -0.28
CDC42SE2-208ENST00000505065 PLXNC1O60486 1568 aa13.27□□□□□ -0.29
CDC42SE2-208ENST00000505065 KIAA1107Q9UPP5 1409 aa13.27□□□□□ -0.29
CDC42SE2-208ENST00000505065 KIDINS220Q9ULH0 1771 aa13.26□□□□□ -0.29
CDC42SE2-208ENST00000505065 ARHGEF12Q9NZN5 1544 aa13.26□□□□□ -0.29
CDC42SE2-208ENST00000505065 SIGLEC1Q9BZZ2 1709 aa13.26□□□□□ -0.29
CDC42SE2-208ENST00000505065 MBD5Q9P267 1494 aa13.26□□□□□ -0.29
CDC42SE2-208ENST00000505065 MYOM3Q5VTT5 1437 aa13.25□□□□□ -0.29
CDC42SE2-208ENST00000505065 RRBP1Q9P2E9 1410 aaKnown RBP13.25□□□□□ -0.29
CDC42SE2-208ENST00000505065 CD109Q6YHK3 1445 aa13.24□□□□□ -0.29
CDC42SE2-208ENST00000505065 SHANK2Q9UPX8 1470 aa13.24□□□□□ -0.29
CDC42SE2-208ENST00000505065 FANCAO15360 1455 aa13.23□□□□□ -0.29
CDC42SE2-208ENST00000505065 PLEKHH2Q8IVE3 1493 aa13.23□□□□□ -0.29
CDC42SE2-208ENST00000505065 ARHGEF40Q8TER5 1519 aa13.22□□□□□ -0.29
CDC42SE2-208ENST00000505065 HECW2Q9P2P5 1572 aa13.22□□□□□ -0.29
CDC42SE2-208ENST00000505065 CAMSAP2Q08AD1 1489 aa13.22□□□□□ -0.29
CDC42SE2-208ENST00000505065 ZFYVE16Q7Z3T8 1539 aa13.22□□□□□ -0.29
CDC42SE2-208ENST00000505065 KDM6BO15054 1643 aa13.21□□□□□ -0.29
CDC42SE2-208ENST00000505065 COL17A1Q9UMD9 1497 aaPredicted RBP13.21□□□□□ -0.29
CDC42SE2-208ENST00000505065 ABCA6Q8N139 1617 aa13.21□□□□□ -0.3
CDC42SE2-208ENST00000505065 KANK4Q5T7N3 995 aaPredicted RBP13.2□□□□□ -0.3
CDC42SE2-208ENST00000505065 EHMT2Q96KQ7 1210 aa13.2□□□□□ -0.3
CDC42SE2-208ENST00000505065 POGZQ7Z3K3 1410 aa13.2□□□□□ -0.3
CDC42SE2-208ENST00000505065 GCC2Q8IWJ2 1684 aa13.2□□□□□ -0.3
CDC42SE2-208ENST00000505065 EIF2AK4Q9P2K8 1649 aaKnown RBP13.2□□□□□ -0.3
CDC42SE2-208ENST00000505065 ARHGAP5Q13017 1502 aa13.19□□□□□ -0.3
CDC42SE2-208ENST00000505065 DEPDC5O75140 1603 aa13.19□□□□□ -0.3
CDC42SE2-208ENST00000505065 PLEKHD1A6NEE1 506 aa13.19□□□□□ -0.3
CDC42SE2-208ENST00000505065 SYCP2Q9BX26 1530 aa13.19□□□□□ -0.3
CDC42SE2-208ENST00000505065 FGD6Q6ZV73 1430 aa13.19□□□□□ -0.3
CDC42SE2-208ENST00000505065 ADGRL2O95490 1459 aa13.19□□□□□ -0.3
CDC42SE2-208ENST00000505065 MAGI2Q86UL8 1455 aa13.19□□□□□ -0.3
CDC42SE2-208ENST00000505065 NPM1P06748 294 aaKnown RBP eCLIP13.19□□□□□ -0.3
CDC42SE2-208ENST00000505065 CDK11AQ9UQ88 783 aaPredicted RBP13.19□□□□□ -0.3
CDC42SE2-208ENST00000505065 AKNAQ7Z591 1439 aa13.18□□□□□ -0.3
CDC42SE2-208ENST00000505065 MLH3Q9UHC1 1453 aa13.18□□□□□ -0.3
CDC42SE2-208ENST00000505065 DIP2CQ9Y2E4 1556 aa13.18□□□□□ -0.3
CDC42SE2-208ENST00000505065 MTUS2Q5JR59 1369 aa13.17□□□□□ -0.3
CDC42SE2-208ENST00000505065 RNF17Q9BXT8 1623 aaKnown RBP13.16□□□□□ -0.3
CDC42SE2-208ENST00000505065 RTEL1-TNFRSF6BF6WH68 1400 aa13.15□□□□□ -0.3
CDC42SE2-208ENST00000505065 ZNF518AQ6AHZ1 1483 aa13.15□□□□□ -0.3
CDC42SE2-208ENST00000505065 RANGAP1P46060 587 aaPredicted RBP13.15□□□□□ -0.3
CDC42SE2-208ENST00000505065 ADGRL1O94910 1474 aa13.13□□□□□ -0.31
CDC42SE2-208ENST00000505065 AGLP35573 1532 aa13.13□□□□□ -0.31
CDC42SE2-208ENST00000505065 FAM135AQ9P2D6 1515 aa13.13□□□□□ -0.31
CDC42SE2-208ENST00000505065 ATP7AQ04656 1500 aa13.12□□□□□ -0.31
CDC42SE2-208ENST00000505065 CCDC141Q6ZP82 1450 aa13.11□□□□□ -0.31
CDC42SE2-208ENST00000505065 MROH1Q8NDA8 1641 aa13.11□□□□□ -0.31
CDC42SE2-208ENST00000505065 CCNB3Q8WWL7 1395 aa13.11□□□□□ -0.31
CDC42SE2-208ENST00000505065 FAM69CQ0P6D2 419 aa13.11□□□□□ -0.31
CDC42SE2-208ENST00000505065 DENND4BO75064 1496 aaPredicted RBP13.1□□□□□ -0.31
CDC42SE2-208ENST00000505065 UNC13BO14795 1591 aa13.1□□□□□ -0.31
CDC42SE2-208ENST00000505065 VWDEQ8N2E2 1590 aa13.1□□□□□ -0.31
CDC42SE2-208ENST00000505065 MROH2AA6NES4 1674 aa13.09□□□□□ -0.31
CDC42SE2-208ENST00000505065 ADAMTSL3P82987 1691 aa13.09□□□□□ -0.31
CDC42SE2-208ENST00000505065 TRAPPC8Q9Y2L5 1435 aa13.09□□□□□ -0.31
CDC42SE2-208ENST00000505065 DAPK1P53355 1430 aa13.08□□□□□ -0.32
CDC42SE2-208ENST00000505065 ZC3H13Q5T200 1668 aaKnown RBP13.08□□□□□ -0.32
CDC42SE2-208ENST00000505065 ABCC5O15440 1437 aa13.08□□□□□ -0.32
CDC42SE2-208ENST00000505065 TTBK1Q5TCY1 1321 aaPredicted RBP13.05□□□□□ -0.32
CDC42SE2-208ENST00000505065 KDM5DQ9BY66 1539 aa13.05□□□□□ -0.32
CDC42SE2-208ENST00000505065 ROCK1Q13464 1354 aa13.05□□□□□ -0.32
CDC42SE2-208ENST00000505065 PTPRKQ15262 1439 aa13.05□□□□□ -0.32
CDC42SE2-208ENST00000505065 PRDM15P57071 1507 aaPredicted RBP13.04□□□□□ -0.32
CDC42SE2-208ENST00000505065 SCAPERQ9BY12 1400 aa13.04□□□□□ -0.32
CDC42SE2-208ENST00000505065 DUOX2Q9NRD8 1548 aa13.03□□□□□ -0.32
CDC42SE2-208ENST00000505065 EFCAB2Q5VUJ9 269 aa13.02□□□□□ -0.33
CDC42SE2-208ENST00000505065 IQGAP3Q86VI3 1631 aa13.01□□□□□ -0.33
CDC42SE2-208ENST00000505065 ARID3CA6NKF2 412 aa13□□□□□ -0.33
CDC42SE2-208ENST00000505065 RSPH4AQ5TD94 716 aa13□□□□□ -0.33
CDC42SE2-208ENST00000505065 LMTK2Q8IWU2 1503 aa13□□□□□ -0.33
CDC42SE2-208ENST00000505065 ERBINQ96RT1 1412 aa12.99□□□□□ -0.33
CDC42SE2-208ENST00000505065 ATP10AO60312 1499 aa12.99□□□□□ -0.33
CDC42SE2-208ENST00000505065 KCNH8Q96L42 1107 aa12.99□□□□□ -0.33
CDC42SE2-208ENST00000505065 C9orf84Q5VXU9 1444 aa12.99□□□□□ -0.33
CDC42SE2-208ENST00000505065 FER1L4A9Z1Z3 1794 aa12.97□□□□□ -0.33
CDC42SE2-208ENST00000505065 NCOA1Q15788 1441 aa12.97□□□□□ -0.33
CDC42SE2-208ENST00000505065 YEATS2Q9ULM3 1422 aa12.97□□□□□ -0.33
CDC42SE2-208ENST00000505065 ZNF644Q9H582 1327 aaPredicted RBP12.96□□□□□ -0.34
CDC42SE2-208ENST00000505065 CFDP1Q9UEE9 299 aaPredicted RBP12.95□□□□□ -0.34
CDC42SE2-208ENST00000505065 HFM1A2PYH4 1435 aa12.94□□□□□ -0.34
CDC42SE2-208ENST00000505065 CAMSAP1Q5T5Y3 1602 aa12.94□□□□□ -0.34
CDC42SE2-208ENST00000505065 KDM5AP29375 1690 aaKnown RBP12.94□□□□□ -0.34
CDC42SE2-208ENST00000505065 TET3O43151 1660 aa12.93□□□□□ -0.34
CDC42SE2-208ENST00000505065 CEP152O94986 1710 aa12.93□□□□□ -0.34
CDC42SE2-208ENST00000505065 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.93□□□□□ -0.34
CDC42SE2-208ENST00000505065 A2MP01023 1474 aa12.93□□□□□ -0.34
CDC42SE2-208ENST00000505065 HNRNPUL2Q1KMD3 747 aaKnown RBP12.93□□□□□ -0.34
CDC42SE2-208ENST00000505065 ATP1B4Q9UN42 357 aaPredicted RBP12.92□□□□□ -0.34
CDC42SE2-208ENST00000505065 C3P01024 1663 aa12.92□□□□□ -0.34
CDC42SE2-208ENST00000505065 ZNF142P52746 1687 aaPredicted RBP12.91□□□□□ -0.34
CDC42SE2-208ENST00000505065 NAIPQ13075 1403 aa12.9□□□□□ -0.34
CDC42SE2-208ENST00000505065 APLP2Q06481 763 aa12.9□□□□□ -0.34
CDC42SE2-208ENST00000505065 PIK3C2BO00750 1634 aa12.9□□□□□ -0.34
CDC42SE2-208ENST00000505065 DHX29Q7Z478 1369 aaKnown RBP12.9□□□□□ -0.35
CDC42SE2-208ENST00000505065 CLTCQ00610 1675 aaKnown RBP12.9□□□□□ -0.35
CDC42SE2-208ENST00000505065 MADDQ8WXG6 1647 aa12.89□□□□□ -0.35
CDC42SE2-208ENST00000505065 E9PCH4 1651 aa12.88□□□□□ -0.35
CDC42SE2-208ENST00000505065 ABCC3O15438 1527 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms