RNA–Protein interactions for RNA: ENST00000504178.1

SYNPO2-205, Transcript of synaptopodin 2, humanhuman

TSL 1 (best)

Gene SYNPO2, Length 6,779 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO2-205ENST00000504178 SETD5Q9C0A6 1442 aa9.18□□□□□ -0.94
SYNPO2-205ENST00000504178 CLSTN1O94985 981 aa9.17□□□□□ -0.94
SYNPO2-205ENST00000504178 KTN1Q86UP2 1357 aaKnown RBP9.17□□□□□ -0.94
SYNPO2-205ENST00000504178 ISY1Q9ULR0 285 aaKnown RBP9.17□□□□□ -0.94
SYNPO2-205ENST00000504178 SOGA1O94964 1423 aa9.16□□□□□ -0.94
SYNPO2-205ENST00000504178 CSB-PGBD3P0DP91 1061 aa9.16□□□□□ -0.94
SYNPO2-205ENST00000504178 ROCK2O75116 1388 aaKnown RBP9.16□□□□□ -0.94
SYNPO2-205ENST00000504178 HSPA5P11021 654 aaKnown RBP9.16□□□□□ -0.94
SYNPO2-205ENST00000504178 CECR2Q9BXF3 1484 aa9.15□□□□□ -0.94
SYNPO2-205ENST00000504178 GOLGA6L4A6NEF3 574 aa9.15□□□□□ -0.94
SYNPO2-205ENST00000504178 PKD2Q13563 968 aa9.15□□□□□ -0.94
SYNPO2-205ENST00000504178 NOP58Q9Y2X3 529 aaKnown RBP9.15□□□□□ -0.94
SYNPO2-205ENST00000504178 SMARCA2P51531 1590 aa9.14□□□□□ -0.95
SYNPO2-205ENST00000504178 ABCC8Q09428 1581 aa9.14□□□□□ -0.95
SYNPO2-205ENST00000504178 PDS5BQ9NTI5 1447 aa9.14□□□□□ -0.95
SYNPO2-205ENST00000504178 EIF3AQ14152 1382 aaKnown RBP9.14□□□□□ -0.95
SYNPO2-205ENST00000504178 B4GALNT3Q6L9W6 998 aa9.13□□□□□ -0.95
SYNPO2-205ENST00000504178 GNL2Q13823 731 aaKnown RBP9.13□□□□□ -0.95
SYNPO2-205ENST00000504178 FOXD1Q16676 465 aa9.13□□□□□ -0.95
SYNPO2-205ENST00000504178 NAP1L5Q96NT1 182 aaPredicted RBP9.13□□□□□ -0.95
SYNPO2-205ENST00000504178 CFAP44Q96MT7 982 aa9.13□□□□□ -0.95
SYNPO2-205ENST00000504178 NRDCO43847 1150 aa9.13□□□□□ -0.95
SYNPO2-205ENST00000504178 ZNF330Q9Y3S2 320 aaPredicted RBP9.13□□□□□ -0.95
SYNPO2-205ENST00000504178 SPRYD3Q8NCJ5 442 aa9.13□□□□□ -0.95
SYNPO2-205ENST00000504178 APBB1O00213 710 aa9.12□□□□□ -0.95
SYNPO2-205ENST00000504178 CCDC88BA6NC98 1476 aa9.12□□□□□ -0.95
SYNPO2-205ENST00000504178 CALD1Q05682 793 aaKnown RBP9.12□□□□□ -0.95
SYNPO2-205ENST00000504178 IPO8O15397 1037 aaKnown RBP9.11□□□□□ -0.95
SYNPO2-205ENST00000504178 ANKRD30AQ9BXX3 1397 aa9.11□□□□□ -0.95
SYNPO2-205ENST00000504178 CCDC9Q9Y3X0 531 aaKnown RBP9.11□□□□□ -0.95
SYNPO2-205ENST00000504178 ITPRIPQ8IWB1 547 aa9.1□□□□□ -0.95
SYNPO2-205ENST00000504178 DRC7Q8IY82 874 aa9.1□□□□□ -0.95
SYNPO2-205ENST00000504178 TMX4Q9H1E5 349 aaPredicted RBP9.1□□□□□ -0.95
SYNPO2-205ENST00000504178 VPS8Q8N3P4 1428 aa9.1□□□□□ -0.95
SYNPO2-205ENST00000504178 ERICH6BQ5W0A0 696 aa9.1□□□□□ -0.95
SYNPO2-205ENST00000504178 KIAA1211Q6ZU35 1233 aa9.1□□□□□ -0.95
SYNPO2-205ENST00000504178 TIMELESSQ9UNS1 1208 aa9.1□□□□□ -0.95
SYNPO2-205ENST00000504178 NUP155O75694 1391 aa9.1□□□□□ -0.95
SYNPO2-205ENST00000504178 FMN1Q68DA7 1419 aa9.09□□□□□ -0.95
SYNPO2-205ENST00000504178 U2AF1L5P0DN76 240 aaPredicted RBP9.09□□□□□ -0.95
SYNPO2-205ENST00000504178 U2AF1Q01081 240 aaKnown RBP eCLIP9.09□□□□□ -0.95
SYNPO2-205ENST00000504178 EFCAB2Q5VUJ9 269 aa9.09□□□□□ -0.95
SYNPO2-205ENST00000504178 CCER2I3L3R5 266 aa9.09□□□□□ -0.95
SYNPO2-205ENST00000504178 SPAG9O60271 1321 aaKnown RBP9.08□□□□□ -0.96
SYNPO2-205ENST00000504178 NCBP3Q53F19 620 aaKnown RBP9.08□□□□□ -0.96
SYNPO2-205ENST00000504178 MPHOSPH9Q99550 1183 aa9.08□□□□□ -0.96
SYNPO2-205ENST00000504178 EID1Q9Y6B2 187 aa9.08□□□□□ -0.96
SYNPO2-205ENST00000504178 RALBP1Q15311 655 aa9.07□□□□□ -0.96
SYNPO2-205ENST00000504178 CHMP3Q9Y3E7 222 aa9.07□□□□□ -0.96
SYNPO2-205ENST00000504178 CHAF1AQ13111 956 aaPredicted RBP9.07□□□□□ -0.96
SYNPO2-205ENST00000504178 NUTM2DQ5VT03 806 aaPredicted RBP9.07□□□□□ -0.96
SYNPO2-205ENST00000504178 MROH2BQ7Z745 1585 aa9.06□□□□□ -0.96
SYNPO2-205ENST00000504178 TDRD9Q8NDG6 1382 aaKnown RBP9.06□□□□□ -0.96
SYNPO2-205ENST00000504178 KANK4Q5T7N3 995 aaPredicted RBP9.06□□□□□ -0.96
SYNPO2-205ENST00000504178 KIF3BO15066 747 aa9.06□□□□□ -0.96
SYNPO2-205ENST00000504178 HNRNPMP52272 730 aaKnown RBP eCLIP9.06□□□□□ -0.96
SYNPO2-205ENST00000504178 RTN4Q9NQC3 1192 aaKnown RBP9.06□□□□□ -0.96
SYNPO2-205ENST00000504178 TAF7LQ5H9L4 462 aa9.06□□□□□ -0.96
SYNPO2-205ENST00000504178 GPATCH3Q96I76 525 aa9.06□□□□□ -0.96
SYNPO2-205ENST00000504178 STK31Q9BXU1 1019 aa9.06□□□□□ -0.96
SYNPO2-205ENST00000504178 RWDD1Q9H446 243 aaPredicted RBP9.06□□□□□ -0.96
SYNPO2-205ENST00000504178 GORABQ5T7V8 394 aa9.05□□□□□ -0.96
SYNPO2-205ENST00000504178 MSNP26038 577 aaKnown RBP9.05□□□□□ -0.96
SYNPO2-205ENST00000504178 L1TD1Q5T7N2 865 aaKnown RBP9.05□□□□□ -0.96
SYNPO2-205ENST00000504178 RAB3GAP2Q9H2M9 1393 aa9.05□□□□□ -0.96
SYNPO2-205ENST00000504178 TERF2IPQ9NYB0 399 aa9.05□□□□□ -0.96
SYNPO2-205ENST00000504178 CCDC18Q5T9S5 1454 aa9.04□□□□□ -0.96
SYNPO2-205ENST00000504178 HSP90B1P14625 803 aaKnown RBP9.04□□□□□ -0.96
SYNPO2-205ENST00000504178 RCAN3Q9UKA8 241 aa9.04□□□□□ -0.96
SYNPO2-205ENST00000504178 TOP2AP11388 1531 aaKnown RBP9.04□□□□□ -0.96
SYNPO2-205ENST00000504178 KIAA2012Q0VF49 1180 aa9.04□□□□□ -0.96
SYNPO2-205ENST00000504178 NGDNQ8NEJ9 315 aaKnown RBP9.04□□□□□ -0.96
SYNPO2-205ENST00000504178 G3V3G9 751 aa9.04□□□□□ -0.96
SYNPO2-205ENST00000504178 DCAF8Q5TAQ9 597 aa9.04□□□□□ -0.96
SYNPO2-205ENST00000504178 PTMSP20962 102 aa9.03□□□□□ -0.96
SYNPO2-205ENST00000504178 WASHC2CQ9Y4E1 1318 aa9.03□□□□□ -0.96
SYNPO2-205ENST00000504178 PMFBP1Q8TBY8 1022 aa9.03□□□□□ -0.96
SYNPO2-205ENST00000504178 CHMP4AQ9BY43 222 aa9.03□□□□□ -0.96
SYNPO2-205ENST00000504178 WIZO95785 1651 aa9.02□□□□□ -0.96
SYNPO2-205ENST00000504178 SMC4Q9NTJ3 1288 aa9.02□□□□□ -0.96
SYNPO2-205ENST00000504178 AMPHP49418 695 aa9.02□□□□□ -0.97
SYNPO2-205ENST00000504178 CCDC146Q8IYE0 955 aa9.02□□□□□ -0.97
SYNPO2-205ENST00000504178 RAPGEF2Q9Y4G8 1499 aa9.02□□□□□ -0.97
SYNPO2-205ENST00000504178 FHOD3Q2V2M9 1422 aa9.02□□□□□ -0.97
SYNPO2-205ENST00000504178 HTATSF1O43719 755 aaKnown RBP9.02□□□□□ -0.97
SYNPO2-205ENST00000504178 TRIM6-TRIM34B2RNG4 842 aa9.02□□□□□ -0.97
SYNPO2-205ENST00000504178 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.02□□□□□ -0.97
SYNPO2-205ENST00000504178 GBP4Q96PP9 640 aa9.01□□□□□ -0.97
SYNPO2-205ENST00000504178 LTV1Q96GA3 475 aaPredicted RBP9.01□□□□□ -0.97
SYNPO2-205ENST00000504178 SLC4A10Q6U841 1118 aa9□□□□□ -0.97
SYNPO2-205ENST00000504178 LMOD3Q0VAK6 560 aa9□□□□□ -0.97
SYNPO2-205ENST00000504178 HMMRO75330 724 aa9□□□□□ -0.97
SYNPO2-205ENST00000504178 MFAP1P55081 439 aaKnown RBP9□□□□□ -0.97
SYNPO2-205ENST00000504178 TPM4P67936 248 aa8.99□□□□□ -0.97
SYNPO2-205ENST00000504178 HDAC5Q9UQL6 1122 aa8.99□□□□□ -0.97
SYNPO2-205ENST00000504178 NUTM2FA1L443 756 aa8.98□□□□□ -0.97
SYNPO2-205ENST00000504178 UACAQ9BZF9 1416 aa8.97□□□□□ -0.97
SYNPO2-205ENST00000504178 RSPH4AQ5TD94 716 aa8.97□□□□□ -0.97
SYNPO2-205ENST00000504178 SYAP1Q96A49 352 aaPredicted RBP8.97□□□□□ -0.97
SYNPO2-205ENST00000504178 CENPJQ9HC77 1338 aaPredicted RBP8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms