RNA–Protein interactions for RNA: ENST00000504044.1

NFKB1-204, Transcript of nuclear factor kappa B subunit 1, humanhuman

TSL 2

Gene NFKB1, Length 580 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1-204ENST00000504044 FRMPD1Q5SYB0 1578 aa28.41■■■□□ 2.14
NFKB1-204ENST00000504044 MAGI2Q86UL8 1455 aa28.4■■■□□ 2.14
NFKB1-204ENST00000504044 VPS8Q8N3P4 1428 aa28.4■■■□□ 2.14
NFKB1-204ENST00000504044 ZMYM4Q5VZL5 1548 aa28.37■■■□□ 2.13
NFKB1-204ENST00000504044 ARID4BQ4LE39 1312 aaPredicted RBP28.37■■■□□ 2.13
NFKB1-204ENST00000504044 CCNB3Q8WWL7 1395 aa28.37■■■□□ 2.13
NFKB1-204ENST00000504044 RICTORQ6R327 1708 aa28.36■■■□□ 2.13
NFKB1-204ENST00000504044 ZNF518AQ6AHZ1 1483 aa28.35■■■□□ 2.13
NFKB1-204ENST00000504044 EHBP1L1Q8N3D4 1523 aa28.35■■■□□ 2.13
NFKB1-204ENST00000504044 PREX2Q70Z35 1606 aa28.34■■■□□ 2.13
NFKB1-204ENST00000504044 ARHGEF40Q8TER5 1519 aa28.33■■■□□ 2.13
NFKB1-204ENST00000504044 ZFYVE16Q7Z3T8 1539 aa28.33■■■□□ 2.13
NFKB1-204ENST00000504044 MYT1LQ9UL68 1186 aa28.32■■■□□ 2.12
NFKB1-204ENST00000504044 CFDP1Q9UEE9 299 aaPredicted RBP28.3■■■□□ 2.12
NFKB1-204ENST00000504044 ZNF777Q9ULD5 760 aaPredicted RBP28.29■■■□□ 2.12
NFKB1-204ENST00000504044 GPATCH8Q9UKJ3 1502 aaKnown RBP28.28■■■□□ 2.12
NFKB1-204ENST00000504044 CDC42BPBQ9Y5S2 1711 aa28.26■■■□□ 2.12
NFKB1-204ENST00000504044 APLP2Q06481 763 aa28.26■■■□□ 2.11
NFKB1-204ENST00000504044 AFAP1Q8N556 730 aa28.25■■■□□ 2.11
NFKB1-204ENST00000504044 PLEKHH2Q8IVE3 1493 aa28.25■■■□□ 2.11
NFKB1-204ENST00000504044 ABCC1P33527 1531 aa28.24■■■□□ 2.11
NFKB1-204ENST00000504044 YEATS2Q9ULM3 1422 aa28.23■■■□□ 2.11
NFKB1-204ENST00000504044 TIAM1Q13009 1591 aa28.22■■■□□ 2.11
NFKB1-204ENST00000504044 CDC42BPAQ5VT25 1732 aa28.22■■■□□ 2.11
NFKB1-204ENST00000504044 ATP10AO60312 1499 aa28.21■■■□□ 2.11
NFKB1-204ENST00000504044 KDM5CP41229 1560 aa28.2■■■□□ 2.11
NFKB1-204ENST00000504044 C9orf84Q5VXU9 1444 aa28.19■■■□□ 2.1
NFKB1-204ENST00000504044 KIAA1107Q9UPP5 1409 aa28.18■■■□□ 2.1
NFKB1-204ENST00000504044 MAP3K1Q13233 1512 aa28.18■■■□□ 2.1
NFKB1-204ENST00000504044 MLH3Q9UHC1 1453 aa28.16■■■□□ 2.1
NFKB1-204ENST00000504044 TRAPPC8Q9Y2L5 1435 aa28.16■■■□□ 2.1
NFKB1-204ENST00000504044 HECW2Q9P2P5 1572 aa28.16■■■□□ 2.1
NFKB1-204ENST00000504044 SUPT6HQ7KZ85 1726 aaKnown RBP28.15■■■□□ 2.1
NFKB1-204ENST00000504044 NCOA2Q15596 1464 aa28.15■■■□□ 2.1
NFKB1-204ENST00000504044 ITSN2Q9NZM3 1697 aa28.14■■■□□ 2.1
NFKB1-204ENST00000504044 LRRC9Q6ZRR7 1453 aa28.14■■■□□ 2.09
NFKB1-204ENST00000504044 ARHGEF12Q9NZN5 1544 aa28.13■■■□□ 2.09
NFKB1-204ENST00000504044 SAMD9LQ8IVG5 1584 aa28.12■■■□□ 2.09
NFKB1-204ENST00000504044 SYCP2Q9BX26 1530 aa28.12■■■□□ 2.09
NFKB1-204ENST00000504044 HNRNPMP52272 730 aaKnown RBP eCLIP28.11■■■□□ 2.09
NFKB1-204ENST00000504044 BCORL1Q5H9F3 1711 aa28.11■■■□□ 2.09
NFKB1-204ENST00000504044 SPAG9O60271 1321 aaKnown RBP28.11■■■□□ 2.09
NFKB1-204ENST00000504044 ADAMTSL3P82987 1691 aa28.09■■■□□ 2.09
NFKB1-204ENST00000504044 MLECQ14165 292 aa28.06■■■□□ 2.08
NFKB1-204ENST00000504044 RSPH4AQ5TD94 716 aa28.06■■■□□ 2.08
NFKB1-204ENST00000504044 PTPRMP28827 1452 aa28.05■■■□□ 2.08
NFKB1-204ENST00000504044 REREQ9P2R6 1566 aa28.03■■■□□ 2.08
NFKB1-204ENST00000504044 DIP2CQ9Y2E4 1556 aa28.03■■■□□ 2.08
NFKB1-204ENST00000504044 KANK4Q5T7N3 995 aaPredicted RBP28.01■■■□□ 2.07
NFKB1-204ENST00000504044 MADDQ8WXG6 1647 aa28■■■□□ 2.07
NFKB1-204ENST00000504044 ZNF644Q9H582 1327 aaPredicted RBP28■■■□□ 2.07
NFKB1-204ENST00000504044 ESF1Q9H501 851 aaKnown RBP27.99■■■□□ 2.07
NFKB1-204ENST00000504044 ABCA6Q8N139 1617 aa27.97■■■□□ 2.07
NFKB1-204ENST00000504044 AGLP35573 1532 aa27.96■■■□□ 2.07
NFKB1-204ENST00000504044 ATP7AQ04656 1500 aa27.96■■■□□ 2.07
NFKB1-204ENST00000504044 CAMSAP2Q08AD1 1489 aa27.95■■■□□ 2.07
NFKB1-204ENST00000504044 MBD5Q9P267 1494 aa27.95■■■□□ 2.06
NFKB1-204ENST00000504044 KIDINS220Q9ULH0 1771 aa27.94■■■□□ 2.06
NFKB1-204ENST00000504044 CCDC141Q6ZP82 1450 aa27.94■■■□□ 2.06
NFKB1-204ENST00000504044 MYOM3Q5VTT5 1437 aa27.93■■■□□ 2.06
NFKB1-204ENST00000504044 MIA2Q96PC5 1412 aa27.93■■■□□ 2.06
NFKB1-204ENST00000504044 TSPY4P0CV99 314 aa27.93■■■□□ 2.06
NFKB1-204ENST00000504044 TSPY10P0CW01 314 aa27.93■■■□□ 2.06
NFKB1-204ENST00000504044 RTEL1-TNFRSF6BF6WH68 1400 aa27.92■■■□□ 2.06
NFKB1-204ENST00000504044 RIMS1Q86UR5 1692 aaKnown RBP27.91■■■□□ 2.06
NFKB1-204ENST00000504044 SIGLEC1Q9BZZ2 1709 aa27.89■■■□□ 2.06
NFKB1-204ENST00000504044 INO80Q9ULG1 1556 aaPredicted RBP27.89■■■□□ 2.05
NFKB1-204ENST00000504044 A2MP01023 1474 aa27.88■■■□□ 2.05
NFKB1-204ENST00000504044 PLPPR3Q6T4P5 718 aa27.87■■■□□ 2.05
NFKB1-204ENST00000504044 FER1L4A9Z1Z3 1794 aa27.86■■■□□ 2.05
NFKB1-204ENST00000504044 CNTLNQ9NXG0 1405 aa27.84■■■□□ 2.05
NFKB1-204ENST00000504044 ARHGEF5Q12774 1597 aa27.83■■■□□ 2.05
NFKB1-204ENST00000504044 DHX29Q7Z478 1369 aaKnown RBP27.78■■■□□ 2.04
NFKB1-204ENST00000504044 PPP6R1Q9UPN7 881 aa27.78■■■□□ 2.04
NFKB1-204ENST00000504044 ADGBQ8N7X0 1667 aa27.78■■■□□ 2.04
NFKB1-204ENST00000504044 PLXNC1O60486 1568 aa27.77■■■□□ 2.04
NFKB1-204ENST00000504044 GGT6Q6P531 493 aa27.75■■■□□ 2.03
NFKB1-204ENST00000504044 FGD6Q6ZV73 1430 aa27.72■■■□□ 2.03
NFKB1-204ENST00000504044 CEBPAP49715 358 aaPredicted RBP27.71■■■□□ 2.03
NFKB1-204ENST00000504044 PTPN23Q9H3S7 1636 aa27.68■■■□□ 2.02
NFKB1-204ENST00000504044 KIF3BO15066 747 aa27.68■■■□□ 2.02
NFKB1-204ENST00000504044 MAST1Q9Y2H9 1570 aa27.68■■■□□ 2.02
NFKB1-204ENST00000504044 LMTK3Q96Q04 1460 aa27.67■■■□□ 2.02
NFKB1-204ENST00000504044 TCOF1Q13428 1488 aaKnown RBP27.65■■■□□ 2.02
NFKB1-204ENST00000504044 UHRF1BP1Q6BDS2 1440 aa27.64■■■□□ 2.02
NFKB1-204ENST00000504044 SHANK2Q9UPX8 1470 aa27.64■■■□□ 2.01
NFKB1-204ENST00000504044 ZMYM3Q14202 1370 aa27.63■■■□□ 2.01
NFKB1-204ENST00000504044 FAM135AQ9P2D6 1515 aa27.6■■■□□ 2.01
NFKB1-204ENST00000504044 ABCC5O15440 1437 aa27.59■■■□□ 2.01
NFKB1-204ENST00000504044 DAPK1P53355 1430 aa27.59■■■□□ 2.01
NFKB1-204ENST00000504044 NPATQ14207 1427 aa27.59■■■□□ 2.01
NFKB1-204ENST00000504044 MROH2AA6NES4 1674 aa27.59■■■□□ 2.01
NFKB1-204ENST00000504044 FAM50AQ14320 339 aaKnown RBP27.59■■■□□ 2.01
NFKB1-204ENST00000504044 WASHC2CQ9Y4E1 1318 aa27.57■■■□□ 2
NFKB1-204ENST00000504044 C3P01024 1663 aa27.56■■■□□ 2
NFKB1-204ENST00000504044 PREX1Q8TCU6 1659 aa27.56■■■□□ 2
NFKB1-204ENST00000504044 KIF15Q9NS87 1388 aa27.56■■■□□ 2
NFKB1-204ENST00000504044 HSPA2P54652 639 aa27.55■■■□□ 2
NFKB1-204ENST00000504044 ANKRD30AQ9BXX3 1397 aa27.55■■■□□ 2
NFKB1-204ENST00000504044 DUOX2Q9NRD8 1548 aa27.55■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms