RNA–Protein interactions for RNA: ENST00000503923.1

VCAN-205, Transcript of versican, humanhuman

TSL 4

Gene VCAN, Length 498 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-205ENST00000503923 PREX2Q70Z35 1606 aa17.39■□□□□ 0.38
VCAN-205ENST00000503923 NCOA2Q15596 1464 aa17.39■□□□□ 0.37
VCAN-205ENST00000503923 EFCAB2Q5VUJ9 269 aa17.39■□□□□ 0.37
VCAN-205ENST00000503923 CDC42BPBQ9Y5S2 1711 aa17.38■□□□□ 0.37
VCAN-205ENST00000503923 GPATCH8Q9UKJ3 1502 aaKnown RBP17.38■□□□□ 0.37
VCAN-205ENST00000503923 AKNAQ7Z591 1439 aa17.38■□□□□ 0.37
VCAN-205ENST00000503923 COL17A1Q9UMD9 1497 aaPredicted RBP17.36■□□□□ 0.37
VCAN-205ENST00000503923 ITSN2Q9NZM3 1697 aa17.36■□□□□ 0.37
VCAN-205ENST00000503923 ADGRL1O94910 1474 aa17.33■□□□□ 0.37
VCAN-205ENST00000503923 CFDP1Q9UEE9 299 aaPredicted RBP17.33■□□□□ 0.36
VCAN-205ENST00000503923 DENND4BO75064 1496 aaPredicted RBP17.31■□□□□ 0.36
VCAN-205ENST00000503923 SCAPERQ9BY12 1400 aa17.3■□□□□ 0.36
VCAN-205ENST00000503923 ZNF777Q9ULD5 760 aaPredicted RBP17.29■□□□□ 0.36
VCAN-205ENST00000503923 SAMD9LQ8IVG5 1584 aa17.28■□□□□ 0.36
VCAN-205ENST00000503923 ABCC1P33527 1531 aa17.28■□□□□ 0.36
VCAN-205ENST00000503923 RAPGEF3O95398 923 aa17.28■□□□□ 0.36
VCAN-205ENST00000503923 PLEKHH2Q8IVE3 1493 aa17.27■□□□□ 0.36
VCAN-205ENST00000503923 MYOM3Q5VTT5 1437 aa17.27■□□□□ 0.35
VCAN-205ENST00000503923 RICTORQ6R327 1708 aa17.27■□□□□ 0.35
VCAN-205ENST00000503923 POGZQ7Z3K3 1410 aa17.26■□□□□ 0.35
VCAN-205ENST00000503923 FRMPD1Q5SYB0 1578 aa17.26■□□□□ 0.35
VCAN-205ENST00000503923 MIA2Q96PC5 1412 aa17.25■□□□□ 0.35
VCAN-205ENST00000503923 KIAA1107Q9UPP5 1409 aa17.25■□□□□ 0.35
VCAN-205ENST00000503923 ZNF518AQ6AHZ1 1483 aa17.24■□□□□ 0.35
VCAN-205ENST00000503923 ARHGEF12Q9NZN5 1544 aa17.23■□□□□ 0.35
VCAN-205ENST00000503923 SYCP2Q9BX26 1530 aa17.22■□□□□ 0.35
VCAN-205ENST00000503923 CAMSAP2Q08AD1 1489 aa17.22■□□□□ 0.35
VCAN-205ENST00000503923 ZNF644Q9H582 1327 aaPredicted RBP17.21■□□□□ 0.35
VCAN-205ENST00000503923 ZMYM4Q5VZL5 1548 aa17.21■□□□□ 0.35
VCAN-205ENST00000503923 PPARGC1BQ86YN6 1023 aaKnown RBP17.21■□□□□ 0.35
VCAN-205ENST00000503923 TRAPPC8Q9Y2L5 1435 aa17.21■□□□□ 0.34
VCAN-205ENST00000503923 HNRNPMP52272 730 aaKnown RBP eCLIP17.2■□□□□ 0.34
VCAN-205ENST00000503923 KDM5CP41229 1560 aa17.19■□□□□ 0.34
VCAN-205ENST00000503923 AFAP1Q8N556 730 aa17.19■□□□□ 0.34
VCAN-205ENST00000503923 FGD6Q6ZV73 1430 aa17.19■□□□□ 0.34
VCAN-205ENST00000503923 MAGI2Q86UL8 1455 aa17.18■□□□□ 0.34
VCAN-205ENST00000503923 MBD5Q9P267 1494 aa17.18■□□□□ 0.34
VCAN-205ENST00000503923 PTPN23Q9H3S7 1636 aa17.17■□□□□ 0.34
VCAN-205ENST00000503923 RSPH4AQ5TD94 716 aa17.16■□□□□ 0.34
VCAN-205ENST00000503923 ZFYVE16Q7Z3T8 1539 aa17.16■□□□□ 0.34
VCAN-205ENST00000503923 HECW2Q9P2P5 1572 aa17.15■□□□□ 0.34
VCAN-205ENST00000503923 MLH3Q9UHC1 1453 aa17.15■□□□□ 0.34
VCAN-205ENST00000503923 ARHGEF5Q12774 1597 aa17.15■□□□□ 0.34
VCAN-205ENST00000503923 TCOF1Q13428 1488 aaKnown RBP17.14■□□□□ 0.33
VCAN-205ENST00000503923 CCDC141Q6ZP82 1450 aa17.14■□□□□ 0.33
VCAN-205ENST00000503923 MYT1LQ9UL68 1186 aa17.14■□□□□ 0.33
VCAN-205ENST00000503923 ARHGEF40Q8TER5 1519 aa17.14■□□□□ 0.33
VCAN-205ENST00000503923 SPAG9O60271 1321 aaKnown RBP17.13■□□□□ 0.33
VCAN-205ENST00000503923 YEATS2Q9ULM3 1422 aa17.12■□□□□ 0.33
VCAN-205ENST00000503923 KIDINS220Q9ULH0 1771 aa17.1■□□□□ 0.33
VCAN-205ENST00000503923 TSPY4P0CV99 314 aa17.09■□□□□ 0.33
VCAN-205ENST00000503923 TSPY10P0CW01 314 aa17.09■□□□□ 0.33
VCAN-205ENST00000503923 ATP7AQ04656 1500 aa17.09■□□□□ 0.33
VCAN-205ENST00000503923 INO80Q9ULG1 1556 aaPredicted RBP17.09■□□□□ 0.33
VCAN-205ENST00000503923 ATP10AO60312 1499 aa17.08■□□□□ 0.32
VCAN-205ENST00000503923 RTEL1-TNFRSF6BF6WH68 1400 aa17.08■□□□□ 0.32
VCAN-205ENST00000503923 FAM50AQ14320 339 aaKnown RBP17.08■□□□□ 0.32
VCAN-205ENST00000503923 DIP2CQ9Y2E4 1556 aa17.07■□□□□ 0.32
VCAN-205ENST00000503923 DNMT1P26358 1616 aaKnown RBP17.07■□□□□ 0.32
VCAN-205ENST00000503923 ABCA6Q8N139 1617 aa17.07■□□□□ 0.32
VCAN-205ENST00000503923 C9orf84Q5VXU9 1444 aa17.06■□□□□ 0.32
VCAN-205ENST00000503923 ABCC5O15440 1437 aa17.05■□□□□ 0.32
VCAN-205ENST00000503923 DAPK1P53355 1430 aa17.05■□□□□ 0.32
VCAN-205ENST00000503923 MAST1Q9Y2H9 1570 aa17.05■□□□□ 0.32
VCAN-205ENST00000503923 RRBP1Q9P2E9 1410 aaKnown RBP17.04■□□□□ 0.32
VCAN-205ENST00000503923 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.04■□□□□ 0.32
VCAN-205ENST00000503923 SHANK2Q9UPX8 1470 aa17.04■□□□□ 0.32
VCAN-205ENST00000503923 CROCC2H7BZ55 1655 aa17.04■□□□□ 0.32
VCAN-205ENST00000503923 REREQ9P2R6 1566 aa17.03■□□□□ 0.32
VCAN-205ENST00000503923 ARID4BQ4LE39 1312 aaPredicted RBP17.01■□□□□ 0.31
VCAN-205ENST00000503923 ADGBQ8N7X0 1667 aa17.01■□□□□ 0.31
VCAN-205ENST00000503923 A2MP01023 1474 aa16.99■□□□□ 0.31
VCAN-205ENST00000503923 SIGLEC1Q9BZZ2 1709 aa16.99■□□□□ 0.31
VCAN-205ENST00000503923 PLXNC1O60486 1568 aa16.98■□□□□ 0.31
VCAN-205ENST00000503923 AGLP35573 1532 aa16.98■□□□□ 0.31
VCAN-205ENST00000503923 DHX29Q7Z478 1369 aaKnown RBP16.96■□□□□ 0.31
VCAN-205ENST00000503923 BCORL1Q5H9F3 1711 aa16.96■□□□□ 0.3
VCAN-205ENST00000503923 ANKRD30AQ9BXX3 1397 aa16.95■□□□□ 0.3
VCAN-205ENST00000503923 CHIC2Q9UKJ5 165 aa16.95■□□□□ 0.3
VCAN-205ENST00000503923 ADGRL2O95490 1459 aa16.94■□□□□ 0.3
VCAN-205ENST00000503923 KIF15Q9NS87 1388 aa16.93■□□□□ 0.3
VCAN-205ENST00000503923 KDM4FA0A1W2PPD8 638 aa16.93■□□□□ 0.3
VCAN-205ENST00000503923 ITGAEP38570 1179 aa16.93■□□□□ 0.3
VCAN-205ENST00000503923 PTPRKQ15262 1439 aa16.93■□□□□ 0.3
VCAN-205ENST00000503923 NCOA1Q15788 1441 aa16.93■□□□□ 0.3
VCAN-205ENST00000503923 DUOX2Q9NRD8 1548 aa16.92■□□□□ 0.3
VCAN-205ENST00000503923 RRP7BPQ9NSQ0 103 aa16.92■□□□□ 0.3
VCAN-205ENST00000503923 ADAMTSL3P82987 1691 aa16.91■□□□□ 0.3
VCAN-205ENST00000503923 MLECQ14165 292 aa16.91■□□□□ 0.3
VCAN-205ENST00000503923 ROCK1Q13464 1354 aa16.9■□□□□ 0.3
VCAN-205ENST00000503923 EIF2AK4Q9P2K8 1649 aaKnown RBP16.88■□□□□ 0.29
VCAN-205ENST00000503923 ERBINQ96RT1 1412 aa16.87■□□□□ 0.29
VCAN-205ENST00000503923 KIF3BO15066 747 aa16.87■□□□□ 0.29
VCAN-205ENST00000503923 MADDQ8WXG6 1647 aa16.87■□□□□ 0.29
VCAN-205ENST00000503923 FER1L4A9Z1Z3 1794 aa16.86■□□□□ 0.29
VCAN-205ENST00000503923 GGT6Q6P531 493 aa16.85■□□□□ 0.29
VCAN-205ENST00000503923 PPP6R1Q9UPN7 881 aa16.84■□□□□ 0.29
VCAN-205ENST00000503923 RIMS1Q86UR5 1692 aaKnown RBP16.83■□□□□ 0.28
VCAN-205ENST00000503923 ESF1Q9H501 851 aaKnown RBP16.83■□□□□ 0.28
VCAN-205ENST00000503923 ANKRD50Q9ULJ7 1429 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms