RNA–Protein interactions for RNA: ENST00000503215.5

SCLT1-204, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 1,364 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-204ENST00000503215 MYO5CQ9NQX4 1742 aa26.37■■□□□ 1.81
SCLT1-204ENST00000503215 HECW2Q9P2P5 1572 aa26.35■■□□□ 1.81
SCLT1-204ENST00000503215 CCDC18Q5T9S5 1454 aa26.35■■□□□ 1.81
SCLT1-204ENST00000503215 PTPRMP28827 1452 aa26.33■■□□□ 1.81
SCLT1-204ENST00000503215 ARHGAP5Q13017 1502 aa26.33■■□□□ 1.81
SCLT1-204ENST00000503215 BCORL1Q5H9F3 1711 aa26.33■■□□□ 1.8
SCLT1-204ENST00000503215 FYCO1Q9BQS8 1478 aa26.32■■□□□ 1.8
SCLT1-204ENST00000503215 ZFYVE16Q7Z3T8 1539 aa26.32■■□□□ 1.8
SCLT1-204ENST00000503215 AFAP1Q8N556 730 aa26.32■■□□□ 1.8
SCLT1-204ENST00000503215 SIGLEC1Q9BZZ2 1709 aa26.3■■□□□ 1.8
SCLT1-204ENST00000503215 MAGI2Q86UL8 1455 aa26.29■■□□□ 1.8
SCLT1-204ENST00000503215 MADDQ8WXG6 1647 aa26.28■■□□□ 1.8
SCLT1-204ENST00000503215 CDC42BPBQ9Y5S2 1711 aa26.26■■□□□ 1.79
SCLT1-204ENST00000503215 MLECQ14165 292 aa26.25■■□□□ 1.79
SCLT1-204ENST00000503215 ARHGEF12Q9NZN5 1544 aa26.23■■□□□ 1.79
SCLT1-204ENST00000503215 LOC105371045A0A1W2PR82 267 aa26.22■■□□□ 1.79
SCLT1-204ENST00000503215 ATP10AO60312 1499 aa26.21■■□□□ 1.79
SCLT1-204ENST00000503215 CEP162Q5TB80 1403 aa26.21■■□□□ 1.79
SCLT1-204ENST00000503215 ZNF518AQ6AHZ1 1483 aa26.2■■□□□ 1.79
SCLT1-204ENST00000503215 TRAPPC8Q9Y2L5 1435 aa26.2■■□□□ 1.78
SCLT1-204ENST00000503215 PREX2Q70Z35 1606 aa26.2■■□□□ 1.78
SCLT1-204ENST00000503215 PLPPR3Q6T4P5 718 aa26.2■■□□□ 1.78
SCLT1-204ENST00000503215 RIMS1Q86UR5 1692 aaKnown RBP26.17■■□□□ 1.78
SCLT1-204ENST00000503215 KDM5CP41229 1560 aa26.17■■□□□ 1.78
SCLT1-204ENST00000503215 MYT1LQ9UL68 1186 aa26.17■■□□□ 1.78
SCLT1-204ENST00000503215 ZNF777Q9ULD5 760 aaPredicted RBP26.17■■□□□ 1.78
SCLT1-204ENST00000503215 CDC42BPAQ5VT25 1732 aa26.16■■□□□ 1.78
SCLT1-204ENST00000503215 C9orf84Q5VXU9 1444 aa26.16■■□□□ 1.78
SCLT1-204ENST00000503215 ABCC1P33527 1531 aa26.15■■□□□ 1.78
SCLT1-204ENST00000503215 GPATCH8Q9UKJ3 1502 aaKnown RBP26.15■■□□□ 1.78
SCLT1-204ENST00000503215 MTUS2Q5JR59 1369 aa26.1■■□□□ 1.77
SCLT1-204ENST00000503215 HNRNPMP52272 730 aaKnown RBP eCLIP26.09■■□□□ 1.773e-7■■■■■ 29.5
SCLT1-204ENST00000503215 MLH3Q9UHC1 1453 aa26.09■■□□□ 1.77
SCLT1-204ENST00000503215 DIP2CQ9Y2E4 1556 aa26.09■■□□□ 1.77
SCLT1-204ENST00000503215 ITSN2Q9NZM3 1697 aa26.08■■□□□ 1.77
SCLT1-204ENST00000503215 SAMD9LQ8IVG5 1584 aa26.07■■□□□ 1.76
SCLT1-204ENST00000503215 CFDP1Q9UEE9 299 aaPredicted RBP26.07■■□□□ 1.76
SCLT1-204ENST00000503215 CCNB3Q8WWL7 1395 aa26.06■■□□□ 1.76
SCLT1-204ENST00000503215 ABCA6Q8N139 1617 aa26.05■■□□□ 1.76
SCLT1-204ENST00000503215 LMTK3Q96Q04 1460 aa26.05■■□□□ 1.76
SCLT1-204ENST00000503215 CEBPAP49715 358 aaPredicted RBP26.04■■□□□ 1.76
SCLT1-204ENST00000503215 SYCP2Q9BX26 1530 aa26.03■■□□□ 1.76
SCLT1-204ENST00000503215 FER1L4A9Z1Z3 1794 aa26.02■■□□□ 1.76
SCLT1-204ENST00000503215 ZNF644Q9H582 1327 aaPredicted RBP26.02■■□□□ 1.76
SCLT1-204ENST00000503215 HSPA2P54652 639 aa26.01■■□□□ 1.75
SCLT1-204ENST00000503215 KIDINS220Q9ULH0 1771 aa26■■□□□ 1.75
SCLT1-204ENST00000503215 ILDR1Q86SU0 546 aaPredicted RBP26■■□□□ 1.75
SCLT1-204ENST00000503215 SPAG9O60271 1321 aaKnown RBP25.97■■□□□ 1.75
SCLT1-204ENST00000503215 REREQ9P2R6 1566 aa25.97■■□□□ 1.75
SCLT1-204ENST00000503215 KIAA1107Q9UPP5 1409 aa25.97■■□□□ 1.75
SCLT1-204ENST00000503215 EHBP1L1Q8N3D4 1523 aa25.96■■□□□ 1.75
SCLT1-204ENST00000503215 TIAM1Q13009 1591 aa25.96■■□□□ 1.75
SCLT1-204ENST00000503215 AGLP35573 1532 aa25.92■■□□□ 1.74
SCLT1-204ENST00000503215 PLEKHH2Q8IVE3 1493 aa25.91■■□□□ 1.74
SCLT1-204ENST00000503215 VPS8Q8N3P4 1428 aa25.89■■□□□ 1.74
SCLT1-204ENST00000503215 NCOA2Q15596 1464 aa25.88■■□□□ 1.73
SCLT1-204ENST00000503215 MBD5Q9P267 1494 aa25.87■■□□□ 1.73
SCLT1-204ENST00000503215 ATP7AQ04656 1500 aa25.86■■□□□ 1.73
SCLT1-204ENST00000503215 INO80Q9ULG1 1556 aaPredicted RBP25.84■■□□□ 1.73
SCLT1-204ENST00000503215 KANK4Q5T7N3 995 aaPredicted RBP25.83■■□□□ 1.73
SCLT1-204ENST00000503215 ESF1Q9H501 851 aaKnown RBP25.82■■□□□ 1.72
SCLT1-204ENST00000503215 A2MP01023 1474 aa25.8■■□□□ 1.72
SCLT1-204ENST00000503215 SUPT6HQ7KZ85 1726 aaKnown RBP25.8■■□□□ 1.72
SCLT1-204ENST00000503215 LRRC9Q6ZRR7 1453 aa25.79■■□□□ 1.72
SCLT1-204ENST00000503215 C3P01024 1663 aa25.78■■□□□ 1.72
SCLT1-204ENST00000503215 PLXNC1O60486 1568 aa25.76■■□□□ 1.71
SCLT1-204ENST00000503215 PREX1Q8TCU6 1659 aa25.76■■□□□ 1.71
SCLT1-204ENST00000503215 CAMSAP2Q08AD1 1489 aa25.75■■□□□ 1.71
SCLT1-204ENST00000503215 GGT6Q6P531 493 aa25.75■■□□□ 1.71
SCLT1-204ENST00000503215 CNTLNQ9NXG0 1405 aa25.74■■□□□ 1.71
SCLT1-204ENST00000503215 SETD1BQ9UPS6 1966 aaKnown RBP25.73■■□□□ 1.71
SCLT1-204ENST00000503215 UHRF1BP1Q6BDS2 1440 aa25.73■■□□□ 1.71
SCLT1-204ENST00000503215 ZMYM3Q14202 1370 aa25.73■■□□□ 1.71
SCLT1-204ENST00000503215 RTEL1-TNFRSF6BF6WH68 1400 aa25.72■■□□□ 1.71
SCLT1-204ENST00000503215 CCDC141Q6ZP82 1450 aa25.7■■□□□ 1.7
SCLT1-204ENST00000503215 MAP3K1Q13233 1512 aa25.68■■□□□ 1.7
SCLT1-204ENST00000503215 DHX29Q7Z478 1369 aaKnown RBP25.67■■□□□ 1.7
SCLT1-204ENST00000503215 ADGBQ8N7X0 1667 aa25.67■■□□□ 1.7
SCLT1-204ENST00000503215 RSPH4AQ5TD94 716 aa25.66■■□□□ 1.7
SCLT1-204ENST00000503215 CLTCQ00610 1675 aaKnown RBP25.64■■□□□ 1.7
SCLT1-204ENST00000503215 KIF3BO15066 747 aa25.64■■□□□ 1.69
SCLT1-204ENST00000503215 FBXO41Q8TF61 875 aa25.64■■□□□ 1.69
SCLT1-204ENST00000503215 STRCQ7RTU9 1775 aa25.63■■□□□ 1.69
SCLT1-204ENST00000503215 MROH2AA6NES4 1674 aa25.62■■□□□ 1.69
SCLT1-204ENST00000503215 ARHGEF5Q12774 1597 aa25.61■■□□□ 1.69
SCLT1-204ENST00000503215 NPATQ14207 1427 aa25.6■■□□□ 1.69
SCLT1-204ENST00000503215 TSPY4P0CV99 314 aa25.6■■□□□ 1.69
SCLT1-204ENST00000503215 TSPY10P0CW01 314 aa25.6■■□□□ 1.69
SCLT1-204ENST00000503215 MYOM3Q5VTT5 1437 aa25.6■■□□□ 1.69
SCLT1-204ENST00000503215 PPP6R1Q9UPN7 881 aa25.59■■□□□ 1.69
SCLT1-204ENST00000503215 PTPRKQ15262 1439 aa25.59■■□□□ 1.69
SCLT1-204ENST00000503215 APLP2Q06481 763 aa25.56■■□□□ 1.68
SCLT1-204ENST00000503215 MIA2Q96PC5 1412 aa25.55■■□□□ 1.68
SCLT1-204ENST00000503215 CERKQ8TCT0 537 aa25.54■■□□□ 1.68
SCLT1-204ENST00000503215 DMRT2Q9Y5R5 561 aa25.53■■□□□ 1.68
SCLT1-204ENST00000503215 FBXO31Q5XUX0 539 aaPredicted RBP25.52■■□□□ 1.68
SCLT1-204ENST00000503215 NCOA1Q15788 1441 aa25.51■■□□□ 1.67
SCLT1-204ENST00000503215 NCKAP5LQ9HCH0 1330 aa25.48■■□□□ 1.67
SCLT1-204ENST00000503215 WASHC2CQ9Y4E1 1318 aa25.48■■□□□ 1.67
SCLT1-204ENST00000503215 CAMSAP1Q5T5Y3 1602 aa25.48■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms