RNA–Protein interactions for RNA: ENST00000502443.1

USP46-203, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 2

Gene USP46, Length 572 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-203ENST00000502443 CDC42BPAQ5VT25 1732 aa11.49□□□□□ -0.57
USP46-203ENST00000502443 CCNB3Q8WWL7 1395 aa11.48□□□□□ -0.57
USP46-203ENST00000502443 DENND4BO75064 1496 aaPredicted RBP11.48□□□□□ -0.57
USP46-203ENST00000502443 ADGRL1O94910 1474 aa11.48□□□□□ -0.57
USP46-203ENST00000502443 PREX2Q70Z35 1606 aa11.48□□□□□ -0.57
USP46-203ENST00000502443 MAP3K1Q13233 1512 aa11.47□□□□□ -0.57
USP46-203ENST00000502443 SCAPERQ9BY12 1400 aa11.47□□□□□ -0.57
USP46-203ENST00000502443 GPATCH8Q9UKJ3 1502 aaKnown RBP11.46□□□□□ -0.57
USP46-203ENST00000502443 LRRC9Q6ZRR7 1453 aa11.46□□□□□ -0.57
USP46-203ENST00000502443 KANK4Q5T7N3 995 aaPredicted RBP11.46□□□□□ -0.57
USP46-203ENST00000502443 ZNF777Q9ULD5 760 aaPredicted RBP11.46□□□□□ -0.57
USP46-203ENST00000502443 SUPT6HQ7KZ85 1726 aaKnown RBP11.46□□□□□ -0.58
USP46-203ENST00000502443 CFDP1Q9UEE9 299 aaPredicted RBP11.45□□□□□ -0.58
USP46-203ENST00000502443 RICTORQ6R327 1708 aa11.45□□□□□ -0.58
USP46-203ENST00000502443 FRMPD1Q5SYB0 1578 aa11.45□□□□□ -0.58
USP46-203ENST00000502443 NCOA2Q15596 1464 aa11.44□□□□□ -0.58
USP46-203ENST00000502443 POGZQ7Z3K3 1410 aa11.43□□□□□ -0.58
USP46-203ENST00000502443 AFAP1Q8N556 730 aa11.42□□□□□ -0.58
USP46-203ENST00000502443 ITSN2Q9NZM3 1697 aa11.42□□□□□ -0.58
USP46-203ENST00000502443 SAMD9LQ8IVG5 1584 aa11.41□□□□□ -0.58
USP46-203ENST00000502443 ABCC1P33527 1531 aa11.4□□□□□ -0.58
USP46-203ENST00000502443 ZNF518AQ6AHZ1 1483 aa11.4□□□□□ -0.58
USP46-203ENST00000502443 MYT1LQ9UL68 1186 aa11.4□□□□□ -0.58
USP46-203ENST00000502443 ZMYM4Q5VZL5 1548 aa11.4□□□□□ -0.59
USP46-203ENST00000502443 ARHGEF12Q9NZN5 1544 aa11.4□□□□□ -0.59
USP46-203ENST00000502443 ZNF644Q9H582 1327 aaPredicted RBP11.39□□□□□ -0.59
USP46-203ENST00000502443 HNRNPMP52272 730 aaKnown RBP eCLIP11.39□□□□□ -0.59
USP46-203ENST00000502443 TRAPPC8Q9Y2L5 1435 aa11.39□□□□□ -0.59
USP46-203ENST00000502443 PLEKHH2Q8IVE3 1493 aa11.38□□□□□ -0.59
USP46-203ENST00000502443 SYCP2Q9BX26 1530 aa11.38□□□□□ -0.59
USP46-203ENST00000502443 MAGI2Q86UL8 1455 aa11.38□□□□□ -0.59
USP46-203ENST00000502443 YEATS2Q9ULM3 1422 aa11.37□□□□□ -0.59
USP46-203ENST00000502443 KIAA1107Q9UPP5 1409 aa11.37□□□□□ -0.59
USP46-203ENST00000502443 ZFYVE16Q7Z3T8 1539 aa11.37□□□□□ -0.59
USP46-203ENST00000502443 KDM5CP41229 1560 aa11.37□□□□□ -0.59
USP46-203ENST00000502443 ARHGEF40Q8TER5 1519 aa11.36□□□□□ -0.59
USP46-203ENST00000502443 KDM4FA0A1W2PPD8 638 aa11.36□□□□□ -0.59
USP46-203ENST00000502443 HECW2Q9P2P5 1572 aa11.36□□□□□ -0.59
USP46-203ENST00000502443 ARID4BQ4LE39 1312 aaPredicted RBP11.35□□□□□ -0.59
USP46-203ENST00000502443 MYOM3Q5VTT5 1437 aa11.35□□□□□ -0.59
USP46-203ENST00000502443 CAMSAP2Q08AD1 1489 aa11.34□□□□□ -0.59
USP46-203ENST00000502443 MLH3Q9UHC1 1453 aa11.34□□□□□ -0.59
USP46-203ENST00000502443 SPAG9O60271 1321 aaKnown RBP11.34□□□□□ -0.59
USP46-203ENST00000502443 ATP10AO60312 1499 aa11.33□□□□□ -0.6
USP46-203ENST00000502443 MIA2Q96PC5 1412 aa11.33□□□□□ -0.6
USP46-203ENST00000502443 MBD5Q9P267 1494 aa11.32□□□□□ -0.6
USP46-203ENST00000502443 PPARGC1BQ86YN6 1023 aaKnown RBP11.32□□□□□ -0.6
USP46-203ENST00000502443 KIDINS220Q9ULH0 1771 aa11.31□□□□□ -0.6
USP46-203ENST00000502443 RSPH4AQ5TD94 716 aa11.31□□□□□ -0.6
USP46-203ENST00000502443 C9orf84Q5VXU9 1444 aa11.31□□□□□ -0.6
USP46-203ENST00000502443 ABCA6Q8N139 1617 aa11.31□□□□□ -0.6
USP46-203ENST00000502443 DIP2CQ9Y2E4 1556 aa11.3□□□□□ -0.6
USP46-203ENST00000502443 ATP7AQ04656 1500 aa11.3□□□□□ -0.6
USP46-203ENST00000502443 SIGLEC1Q9BZZ2 1709 aa11.29□□□□□ -0.6
USP46-203ENST00000502443 MLECQ14165 292 aa11.29□□□□□ -0.6
USP46-203ENST00000502443 CCDC141Q6ZP82 1450 aa11.29□□□□□ -0.6
USP46-203ENST00000502443 BCORL1Q5H9F3 1711 aa11.29□□□□□ -0.6
USP46-203ENST00000502443 ARHGEF5Q12774 1597 aa11.28□□□□□ -0.6
USP46-203ENST00000502443 INO80Q9ULG1 1556 aaPredicted RBP11.28□□□□□ -0.6
USP46-203ENST00000502443 PTPN23Q9H3S7 1636 aa11.28□□□□□ -0.6
USP46-203ENST00000502443 FGD6Q6ZV73 1430 aa11.28□□□□□ -0.6
USP46-203ENST00000502443 TSPY4P0CV99 314 aa11.28□□□□□ -0.6
USP46-203ENST00000502443 TSPY10P0CW01 314 aa11.28□□□□□ -0.6
USP46-203ENST00000502443 ADAMTSL3P82987 1691 aa11.27□□□□□ -0.61
USP46-203ENST00000502443 RTEL1-TNFRSF6BF6WH68 1400 aa11.26□□□□□ -0.61
USP46-203ENST00000502443 REREQ9P2R6 1566 aa11.26□□□□□ -0.61
USP46-203ENST00000502443 FAM50AQ14320 339 aaKnown RBP11.25□□□□□ -0.61
USP46-203ENST00000502443 TCOF1Q13428 1488 aaKnown RBP11.25□□□□□ -0.61
USP46-203ENST00000502443 MADDQ8WXG6 1647 aa11.24□□□□□ -0.61
USP46-203ENST00000502443 ADGBQ8N7X0 1667 aa11.24□□□□□ -0.61
USP46-203ENST00000502443 A2MP01023 1474 aa11.24□□□□□ -0.61
USP46-203ENST00000502443 AGLP35573 1532 aa11.23□□□□□ -0.61
USP46-203ENST00000502443 ABCC5O15440 1437 aa11.22□□□□□ -0.61
USP46-203ENST00000502443 RIMS1Q86UR5 1692 aaKnown RBP11.22□□□□□ -0.61
USP46-203ENST00000502443 FER1L4A9Z1Z3 1794 aa11.21□□□□□ -0.61
USP46-203ENST00000502443 CROCC2H7BZ55 1655 aa11.21□□□□□ -0.61
USP46-203ENST00000502443 DNMT1P26358 1616 aaKnown RBP11.21□□□□□ -0.61
USP46-203ENST00000502443 MAST1Q9Y2H9 1570 aa11.21□□□□□ -0.61
USP46-203ENST00000502443 PTPRMP28827 1452 aa11.21□□□□□ -0.61
USP46-203ENST00000502443 DAPK1P53355 1430 aa11.21□□□□□ -0.61
USP46-203ENST00000502443 DHX29Q7Z478 1369 aaKnown RBP11.21□□□□□ -0.61
USP46-203ENST00000502443 PLXNC1O60486 1568 aa11.2□□□□□ -0.62
USP46-203ENST00000502443 PLPPR3Q6T4P5 718 aa11.2□□□□□ -0.62
USP46-203ENST00000502443 ESF1Q9H501 851 aaKnown RBP11.2□□□□□ -0.62
USP46-203ENST00000502443 CHIC2Q9UKJ5 165 aa11.2□□□□□ -0.62
USP46-203ENST00000502443 SHANK2Q9UPX8 1470 aa11.19□□□□□ -0.62
USP46-203ENST00000502443 GGT6Q6P531 493 aa11.19□□□□□ -0.62
USP46-203ENST00000502443 KIF3BO15066 747 aa11.18□□□□□ -0.62
USP46-203ENST00000502443 RRP7BPQ9NSQ0 103 aa11.18□□□□□ -0.62
USP46-203ENST00000502443 ANKRD30AQ9BXX3 1397 aa11.16□□□□□ -0.62
USP46-203ENST00000502443 KIF15Q9NS87 1388 aa11.16□□□□□ -0.62
USP46-203ENST00000502443 ITGAEP38570 1179 aa11.16□□□□□ -0.62
USP46-203ENST00000502443 CEBPAP49715 358 aaPredicted RBP11.15□□□□□ -0.62
USP46-203ENST00000502443 DUOX2Q9NRD8 1548 aa11.14□□□□□ -0.63
USP46-203ENST00000502443 PPP6R1Q9UPN7 881 aa11.14□□□□□ -0.63
USP46-203ENST00000502443 NCOA1Q15788 1441 aa11.14□□□□□ -0.63
USP46-203ENST00000502443 CNTLNQ9NXG0 1405 aa11.14□□□□□ -0.63
USP46-203ENST00000502443 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.14□□□□□ -0.63
USP46-203ENST00000502443 RRBP1Q9P2E9 1410 aaKnown RBP11.13□□□□□ -0.63
USP46-203ENST00000502443 CLTCQ00610 1675 aaKnown RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms