RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 AKNAQ7Z591 1439 aa7.41□□□□□ -1.22
USP54-216ENST00000498143 PSDA5PKW4 1024 aaPredicted RBP7.41□□□□□ -1.22
USP54-216ENST00000498143 TNS4Q8IZW8 715 aa7.41□□□□□ -1.22
USP54-216ENST00000498143 ZCCHC6Q5VYS8 1495 aaKnown RBP7.4□□□□□ -1.22
USP54-216ENST00000498143 ZBTB7CA1YPR0 619 aa7.4□□□□□ -1.22
USP54-216ENST00000498143 MROH2BQ7Z745 1585 aa7.4□□□□□ -1.23
USP54-216ENST00000498143 FKBP8Q14318 412 aa7.38□□□□□ -1.23
USP54-216ENST00000498143 WDR62O43379 1518 aa7.38□□□□□ -1.23
USP54-216ENST00000498143 RAD54L2Q9Y4B4 1467 aa7.38□□□□□ -1.23
USP54-216ENST00000498143 PCGF6Q9BYE7 350 aa7.38□□□□□ -1.23
USP54-216ENST00000498143 TAOK2Q9UL54 1235 aa7.38□□□□□ -1.23
USP54-216ENST00000498143 TNIKQ9UKE5 1360 aa7.37□□□□□ -1.23
USP54-216ENST00000498143 ABCC10Q5T3U5 1492 aa7.37□□□□□ -1.23
USP54-216ENST00000498143 BEGAINQ9BUH8 593 aa7.37□□□□□ -1.23
USP54-216ENST00000498143 WRNQ14191 1432 aaPredicted RBP eCLIP7.37□□□□□ -1.23
USP54-216ENST00000498143 MAGI1Q96QZ7 1491 aaPredicted RBP7.37□□□□□ -1.23
USP54-216ENST00000498143 RBM6P78332 1123 aaKnown RBP7.36□□□□□ -1.23
USP54-216ENST00000498143 ZEB1P37275 1124 aaPredicted RBP7.36□□□□□ -1.23
USP54-216ENST00000498143 UPF1Q92900 1129 aaKnown RBP eCLIP7.35□□□□□ -1.23
USP54-216ENST00000498143 AIDAQ96BJ3 306 aa7.35□□□□□ -1.23
USP54-216ENST00000498143 PTPRKQ15262 1439 aa7.35□□□□□ -1.23
USP54-216ENST00000498143 TSPY4P0CV99 314 aa7.35□□□□□ -1.23
USP54-216ENST00000498143 TSPY10P0CW01 314 aa7.35□□□□□ -1.23
USP54-216ENST00000498143 TXNDC2Q86VQ3 553 aa7.34□□□□□ -1.23
USP54-216ENST00000498143 CCDC125Q86Z20 511 aa7.34□□□□□ -1.23
USP54-216ENST00000498143 BCL11BQ9C0K0 894 aaPredicted RBP7.34□□□□□ -1.23
USP54-216ENST00000498143 WASHC2CQ9Y4E1 1318 aa7.34□□□□□ -1.23
USP54-216ENST00000498143 THOC2Q8NI27 1593 aaKnown RBP7.34□□□□□ -1.23
USP54-216ENST00000498143 ZNF526Q8TF50 670 aaPredicted RBP7.34□□□□□ -1.23
USP54-216ENST00000498143 ASXL2Q76L83 1435 aa7.34□□□□□ -1.24
USP54-216ENST00000498143 PAXIP1Q6ZW49 1069 aaPredicted RBP7.33□□□□□ -1.24
USP54-216ENST00000498143 ATAD2Q6PL18 1390 aa7.33□□□□□ -1.24
USP54-216ENST00000498143 UNC13AQ9UPW8 1703 aa7.32□□□□□ -1.24
USP54-216ENST00000498143 PDE3BQ13370 1112 aa7.32□□□□□ -1.24
USP54-216ENST00000498143 SPON1Q9HCB6 807 aa7.32□□□□□ -1.24
USP54-216ENST00000498143 NPM2Q86SE8 214 aaKnown RBP7.32□□□□□ -1.24
USP54-216ENST00000498143 TRPC5Q9UL62 973 aaPredicted RBP7.31□□□□□ -1.24
USP54-216ENST00000498143 TOPBP1Q92547 1522 aa7.31□□□□□ -1.24
USP54-216ENST00000498143 GPBP1L1Q9HC44 474 aaPredicted RBP7.31□□□□□ -1.24
USP54-216ENST00000498143 USP21Q9UK80 565 aa7.31□□□□□ -1.24
USP54-216ENST00000498143 MSH6P52701 1360 aa7.3□□□□□ -1.24
USP54-216ENST00000498143 URB2Q14146 1524 aaKnown RBP7.3□□□□□ -1.24
USP54-216ENST00000498143 EVA1CP58658 441 aa7.3□□□□□ -1.24
USP54-216ENST00000498143 TSPOAP1O95153 1857 aa7.3□□□□□ -1.24
USP54-216ENST00000498143 FANCAO15360 1455 aa7.3□□□□□ -1.24
USP54-216ENST00000498143 PTPRMP28827 1452 aa7.3□□□□□ -1.24
USP54-216ENST00000498143 POLD1P28340 1107 aa7.3□□□□□ -1.24
USP54-216ENST00000498143 PHLDB1Q86UU1 1377 aa7.3□□□□□ -1.24
USP54-216ENST00000498143 POTEAQ6S8J7 498 aa7.3□□□□□ -1.24
USP54-216ENST00000498143 KIF21AQ7Z4S6 1674 aa7.29□□□□□ -1.24
USP54-216ENST00000498143 ZNF326Q5BKZ1 582 aaKnown RBP7.29□□□□□ -1.24
USP54-216ENST00000498143 FHAD1B1AJZ9 1412 aa7.29□□□□□ -1.24
USP54-216ENST00000498143 R3HDM1Q15032 1099 aaKnown RBP7.28□□□□□ -1.24
USP54-216ENST00000498143 PTPRTO14522 1441 aa7.28□□□□□ -1.24
USP54-216ENST00000498143 FAM83GA6ND36 823 aa7.28□□□□□ -1.24
USP54-216ENST00000498143 CDK11BP21127 795 aaKnown RBP7.28□□□□□ -1.24
USP54-216ENST00000498143 CFTRP13569 1480 aa7.28□□□□□ -1.24
USP54-216ENST00000498143 CADPS2Q86UW7 1296 aa7.27□□□□□ -1.25
USP54-216ENST00000498143 LRRC59Q96AG4 307 aaKnown RBP7.27□□□□□ -1.25
USP54-216ENST00000498143 SMARCA4P51532 1647 aa7.27□□□□□ -1.25
USP54-216ENST00000498143 SPAG9O60271 1321 aaKnown RBP7.26□□□□□ -1.25
USP54-216ENST00000498143 KIF3BO15066 747 aa7.26□□□□□ -1.25
USP54-216ENST00000498143 RTL5Q5HYW3 569 aaPredicted RBP7.26□□□□□ -1.25
USP54-216ENST00000498143 AFF2P51816 1311 aa7.26□□□□□ -1.25
USP54-216ENST00000498143 CLSPNQ9HAW4 1339 aa7.26□□□□□ -1.25
USP54-216ENST00000498143 C1QTNF8P60827 252 aa7.25□□□□□ -1.25
USP54-216ENST00000498143 GTF3C3Q9Y5Q9 886 aa7.24□□□□□ -1.25
USP54-216ENST00000498143 UACAQ9BZF9 1416 aa7.24□□□□□ -1.25
USP54-216ENST00000498143 NPHP1O15259 732 aa7.23□□□□□ -1.25
USP54-216ENST00000498143 HMGB1P09429 215 aaKnown RBP7.23□□□□□ -1.25
USP54-216ENST00000498143 DENND4BO75064 1496 aaPredicted RBP7.23□□□□□ -1.25
USP54-216ENST00000498143 JCADQ9P266 1359 aa7.22□□□□□ -1.25
USP54-216ENST00000498143 FGD5Q6ZNL6 1462 aa7.22□□□□□ -1.25
USP54-216ENST00000498143 STK32BQ9NY57 414 aa7.21□□□□□ -1.26
USP54-216ENST00000498143 POLA1P09884 1462 aaPredicted RBP7.21□□□□□ -1.26
USP54-216ENST00000498143 APBA3O96018 575 aa7.2□□□□□ -1.26
USP54-216ENST00000498143 GRM1Q13255 1194 aa7.2□□□□□ -1.26
USP54-216ENST00000498143 PPARGC1BQ86YN6 1023 aaKnown RBP7.2□□□□□ -1.26
USP54-216ENST00000498143 SLC26A8Q96RN1 970 aa7.2□□□□□ -1.26
USP54-216ENST00000498143 FOXD4L1Q9NU39 408 aa7.2□□□□□ -1.26
USP54-216ENST00000498143 SLAIN2Q9P270 581 aa7.2□□□□□ -1.26
USP54-216ENST00000498143 WWC3Q9ULE0 1092 aa7.2□□□□□ -1.26
USP54-216ENST00000498143 USP35Q9P2H5 1018 aa7.2□□□□□ -1.26
USP54-216ENST00000498143 CFDP1Q9UEE9 299 aaPredicted RBP7.2□□□□□ -1.26
USP54-216ENST00000498143 WDR7Q9Y4E6 1490 aa7.2□□□□□ -1.26
USP54-216ENST00000498143 GRIN2AQ12879 1464 aa7.19□□□□□ -1.26
USP54-216ENST00000498143 DEFB132Q7Z7B7 95 aa7.19□□□□□ -1.26
USP54-216ENST00000498143 CSB-PGBD3P0DP91 1061 aa7.19□□□□□ -1.26
USP54-216ENST00000498143 CARMIL1Q5VZK9 1371 aa7.19□□□□□ -1.26
USP54-216ENST00000498143 PCF11O94913 1555 aaKnown RBP7.18□□□□□ -1.26
USP54-216ENST00000498143 KIF27Q86VH2 1401 aa7.18□□□□□ -1.26
USP54-216ENST00000498143 AFAP1Q8N556 730 aa7.18□□□□□ -1.26
USP54-216ENST00000498143 PMFBP1Q8TBY8 1022 aa7.18□□□□□ -1.26
USP54-216ENST00000498143 CCDC85CA6NKD9 419 aa7.18□□□□□ -1.26
USP54-216ENST00000498143 PAK3O75914 559 aaPredicted RBP7.18□□□□□ -1.26
USP54-216ENST00000498143 SPATA31A6Q5VVP1 1343 aa7.18□□□□□ -1.26
USP54-216ENST00000498143 NPM3O75607 178 aaKnown RBP7.18□□□□□ -1.26
USP54-216ENST00000498143 EIF4G3O43432 1585 aaKnown RBP7.17□□□□□ -1.26
USP54-216ENST00000498143 GRIN3BO60391 1043 aa7.16□□□□□ -1.26
USP54-216ENST00000498143 SCAPERQ9BY12 1400 aa7.15□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms