RNA–Protein interactions for RNA: ENST00000497470.1

SCAMP3-209, Transcript of secretory carrier membrane protein 3, humanhuman

TSL 5

Gene SCAMP3, Length 845 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP3-209ENST00000497470 CFDP1Q9UEE9 299 aaPredicted RBP30.37■■■□□ 2.45
SCAMP3-209ENST00000497470 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.37■■■□□ 2.454e-6■■■■■ 30.2
SCAMP3-209ENST00000497470 CFAP74Q9C0B2 1584 aa30.37■■■□□ 2.45
SCAMP3-209ENST00000497470 CDC42BPBQ9Y5S2 1711 aa30.36■■■□□ 2.45
SCAMP3-209ENST00000497470 FGD6Q6ZV73 1430 aa30.35■■■□□ 2.45
SCAMP3-209ENST00000497470 PLEKHH2Q8IVE3 1493 aa30.34■■■□□ 2.45
SCAMP3-209ENST00000497470 FANCAO15360 1455 aa30.33■■■□□ 2.45
SCAMP3-209ENST00000497470 RRBP1Q9P2E9 1410 aaKnown RBP30.32■■■□□ 2.44
SCAMP3-209ENST00000497470 TRHP20396 242 aaPredicted RBP30.32■■■□□ 2.44
SCAMP3-209ENST00000497470 ARHGAP5Q13017 1502 aa30.32■■■□□ 2.44
SCAMP3-209ENST00000497470 KIAA1107Q9UPP5 1409 aa30.31■■■□□ 2.44
SCAMP3-209ENST00000497470 TCOF1Q13428 1488 aaKnown RBP30.31■■■□□ 2.44
SCAMP3-209ENST00000497470 PPARGC1BQ86YN6 1023 aaKnown RBP30.3■■■□□ 2.44
SCAMP3-209ENST00000497470 PPRC1Q5VV67 1664 aaKnown RBP30.29■■■□□ 2.44
SCAMP3-209ENST00000497470 RSPH4AQ5TD94 716 aa30.27■■■□□ 2.44
SCAMP3-209ENST00000497470 AKNAQ7Z591 1439 aa30.25■■■□□ 2.43
SCAMP3-209ENST00000497470 PTPN23Q9H3S7 1636 aa30.22■■■□□ 2.43
SCAMP3-209ENST00000497470 SAMD9LQ8IVG5 1584 aa30.2■■■□□ 2.43
SCAMP3-209ENST00000497470 CAMSAP2Q08AD1 1489 aa30.19■■■□□ 2.42
SCAMP3-209ENST00000497470 ABCC1P33527 1531 aa30.18■■■□□ 2.42
SCAMP3-209ENST00000497470 ADGRL1O94910 1474 aa30.16■■■□□ 2.42
SCAMP3-209ENST00000497470 MBD5Q9P267 1494 aa30.16■■■□□ 2.42
SCAMP3-209ENST00000497470 ARHGEF5Q12774 1597 aa30.15■■■□□ 2.42
SCAMP3-209ENST00000497470 TSPOAP1O95153 1857 aa30.14■■■□□ 2.42
SCAMP3-209ENST00000497470 ZNF777Q9ULD5 760 aaPredicted RBP30.12■■■□□ 2.41
SCAMP3-209ENST00000497470 SCAPERQ9BY12 1400 aa30.12■■■□□ 2.41
SCAMP3-209ENST00000497470 ZNF644Q9H582 1327 aaPredicted RBP30.11■■■□□ 2.41
SCAMP3-209ENST00000497470 DENND4BO75064 1496 aaPredicted RBP30.1■■■□□ 2.41
SCAMP3-209ENST00000497470 ZNF518AQ6AHZ1 1483 aa30.08■■■□□ 2.41
SCAMP3-209ENST00000497470 ARHGEF12Q9NZN5 1544 aa30.07■■■□□ 2.4
SCAMP3-209ENST00000497470 SYCP2Q9BX26 1530 aa30.06■■■□□ 2.4
SCAMP3-209ENST00000497470 CCDC141Q6ZP82 1450 aa30.06■■■□□ 2.4
SCAMP3-209ENST00000497470 POGZQ7Z3K3 1410 aa30.05■■■□□ 2.4
SCAMP3-209ENST00000497470 DNMT1P26358 1616 aaKnown RBP30.05■■■□□ 2.4
SCAMP3-209ENST00000497470 FAM50AQ14320 339 aaKnown RBP30.04■■■□□ 2.4
SCAMP3-209ENST00000497470 SHANK2Q9UPX8 1470 aa30.04■■■□□ 2.4
SCAMP3-209ENST00000497470 HNRNPMP52272 730 aaKnown RBP eCLIP30.02■■■□□ 2.4
SCAMP3-209ENST00000497470 RTEL1-TNFRSF6BF6WH68 1400 aa30.02■■■□□ 2.4
SCAMP3-209ENST00000497470 KDM5CP41229 1560 aa30.02■■■□□ 2.4
SCAMP3-209ENST00000497470 TRIM26Q12899 539 aaPredicted RBP30.01■■■□□ 2.39
SCAMP3-209ENST00000497470 ABCC5O15440 1437 aa30.01■■■□□ 2.39
SCAMP3-209ENST00000497470 DAPK1P53355 1430 aa30.01■■■□□ 2.39
SCAMP3-209ENST00000497470 TRAPPC8Q9Y2L5 1435 aa30■■■□□ 2.39
SCAMP3-209ENST00000497470 MAGI2Q86UL8 1455 aa29.99■■■□□ 2.39
SCAMP3-209ENST00000497470 TSPY4P0CV99 314 aa29.99■■■□□ 2.39
SCAMP3-209ENST00000497470 TSPY10P0CW01 314 aa29.99■■■□□ 2.39
SCAMP3-209ENST00000497470 MAST1Q9Y2H9 1570 aa29.98■■■□□ 2.39
SCAMP3-209ENST00000497470 ZMYM4Q5VZL5 1548 aa29.98■■■□□ 2.39
SCAMP3-209ENST00000497470 RICTORQ6R327 1708 aa29.98■■■□□ 2.39
SCAMP3-209ENST00000497470 MLH3Q9UHC1 1453 aa29.98■■■□□ 2.39
SCAMP3-209ENST00000497470 COL17A1Q9UMD9 1497 aaPredicted RBP29.96■■■□□ 2.39
SCAMP3-209ENST00000497470 ROCK1Q13464 1354 aa29.93■■■□□ 2.38
SCAMP3-209ENST00000497470 AFAP1Q8N556 730 aa29.93■■■□□ 2.38
SCAMP3-209ENST00000497470 KDM6BO15054 1643 aa29.93■■■□□ 2.38
SCAMP3-209ENST00000497470 CROCC2H7BZ55 1655 aa29.92■■■□□ 2.38
SCAMP3-209ENST00000497470 FRMPD1Q5SYB0 1578 aa29.92■■■□□ 2.38
SCAMP3-209ENST00000497470 ADGRL2O95490 1459 aa29.92■■■□□ 2.38
SCAMP3-209ENST00000497470 SPAG9O60271 1321 aaKnown RBP29.91■■■□□ 2.38
SCAMP3-209ENST00000497470 C9orf84Q5VXU9 1444 aa29.89■■■□□ 2.38
SCAMP3-209ENST00000497470 RAPGEF3O95398 923 aa29.89■■■□□ 2.38
SCAMP3-209ENST00000497470 INO80Q9ULG1 1556 aaPredicted RBP29.87■■■□□ 2.37
SCAMP3-209ENST00000497470 HECW2Q9P2P5 1572 aa29.86■■■□□ 2.37
SCAMP3-209ENST00000497470 PTPRKQ15262 1439 aa29.86■■■□□ 2.37
SCAMP3-209ENST00000497470 ANKRD30AQ9BXX3 1397 aa29.85■■■□□ 2.37
SCAMP3-209ENST00000497470 NCOA1Q15788 1441 aa29.84■■■□□ 2.37
SCAMP3-209ENST00000497470 ATP7AQ04656 1500 aa29.84■■■□□ 2.37
SCAMP3-209ENST00000497470 ZFYVE16Q7Z3T8 1539 aa29.84■■■□□ 2.37
SCAMP3-209ENST00000497470 PLXNC1O60486 1568 aa29.84■■■□□ 2.37
SCAMP3-209ENST00000497470 KIDINS220Q9ULH0 1771 aa29.8■■■□□ 2.36
SCAMP3-209ENST00000497470 ADGBQ8N7X0 1667 aa29.79■■■□□ 2.36
SCAMP3-209ENST00000497470 ACIN1Q9UKV3 1341 aaKnown RBP29.76■■■□□ 2.36
SCAMP3-209ENST00000497470 REREQ9P2R6 1566 aa29.76■■■□□ 2.35
SCAMP3-209ENST00000497470 HFM1A2PYH4 1435 aa29.75■■■□□ 2.35
SCAMP3-209ENST00000497470 ATP10AO60312 1499 aa29.72■■■□□ 2.35
SCAMP3-209ENST00000497470 ARHGEF40Q8TER5 1519 aa29.71■■■□□ 2.35
SCAMP3-209ENST00000497470 DUOX2Q9NRD8 1548 aa29.71■■■□□ 2.35
SCAMP3-209ENST00000497470 ITGAEP38570 1179 aa29.71■■■□□ 2.35
SCAMP3-209ENST00000497470 KIF15Q9NS87 1388 aa29.71■■■□□ 2.35
SCAMP3-209ENST00000497470 DHX29Q7Z478 1369 aaKnown RBP29.7■■■□□ 2.35
SCAMP3-209ENST00000497470 DIP2CQ9Y2E4 1556 aa29.69■■■□□ 2.34
SCAMP3-209ENST00000497470 CHIC2Q9UKJ5 165 aa29.69■■■□□ 2.34
SCAMP3-209ENST00000497470 HRCP23327 699 aa29.68■■■□□ 2.34
SCAMP3-209ENST00000497470 ERBINQ96RT1 1412 aa29.68■■■□□ 2.34
SCAMP3-209ENST00000497470 YEATS2Q9ULM3 1422 aa29.68■■■□□ 2.34
SCAMP3-209ENST00000497470 NAIPQ13075 1403 aa29.67■■■□□ 2.34
SCAMP3-209ENST00000497470 ABCA6Q8N139 1617 aa29.66■■■□□ 2.34
SCAMP3-209ENST00000497470 A2MP01023 1474 aa29.66■■■□□ 2.34
SCAMP3-209ENST00000497470 MYT1LQ9UL68 1186 aa29.65■■■□□ 2.34
SCAMP3-209ENST00000497470 AGLP35573 1532 aa29.65■■■□□ 2.34
SCAMP3-209ENST00000497470 RRP7BPQ9NSQ0 103 aa29.63■■■□□ 2.33
SCAMP3-209ENST00000497470 GCC2Q8IWJ2 1684 aa29.63■■■□□ 2.33
SCAMP3-209ENST00000497470 ANKRD50Q9ULJ7 1429 aa29.62■■■□□ 2.33
SCAMP3-209ENST00000497470 BCORL1Q5H9F3 1711 aa29.61■■■□□ 2.33
SCAMP3-209ENST00000497470 EIF2AK4Q9P2K8 1649 aaKnown RBP29.6■■■□□ 2.33
SCAMP3-209ENST00000497470 SETD5Q9C0A6 1442 aa29.6■■■□□ 2.33
SCAMP3-209ENST00000497470 PPP6R1Q9UPN7 881 aa29.54■■■□□ 2.32
SCAMP3-209ENST00000497470 PCGF6Q9BYE7 350 aa29.5■■■□□ 2.31
SCAMP3-209ENST00000497470 FAM135AQ9P2D6 1515 aa29.49■■■□□ 2.31
SCAMP3-209ENST00000497470 RNF17Q9BXT8 1623 aaKnown RBP29.46■■■□□ 2.31
SCAMP3-209ENST00000497470 RAB3GAP2Q9H2M9 1393 aa29.45■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms