RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 RGS3P49796 1198 aa16.9■□□□□ 0.3
PTPRF-215ENST00000496447 CCDC88BA6NC98 1476 aa16.89■□□□□ 0.29
PTPRF-215ENST00000496447 KCNJ4P48050 445 aa16.89■□□□□ 0.29
PTPRF-215ENST00000496447 NAP1L5Q96NT1 182 aaPredicted RBP16.88■□□□□ 0.29
PTPRF-215ENST00000496447 CSB-PGBD3P0DP91 1061 aa16.88■□□□□ 0.29
PTPRF-215ENST00000496447 SETD5Q9C0A6 1442 aa16.86■□□□□ 0.29
PTPRF-215ENST00000496447 FOXD1Q16676 465 aa16.85■□□□□ 0.29
PTPRF-215ENST00000496447 NAP1L2Q9ULW6 460 aaPredicted RBP16.85■□□□□ 0.29
PTPRF-215ENST00000496447 FMN1Q68DA7 1419 aa16.85■□□□□ 0.29
PTPRF-215ENST00000496447 TIMELESSQ9UNS1 1208 aa16.84■□□□□ 0.29
PTPRF-215ENST00000496447 RBM19Q9Y4C8 960 aaKnown RBP16.84■□□□□ 0.29
PTPRF-215ENST00000496447 NUP155O75694 1391 aa16.84■□□□□ 0.29
PTPRF-215ENST00000496447 KIF3BO15066 747 aa16.84■□□□□ 0.29
PTPRF-215ENST00000496447 MROH2BQ7Z745 1585 aa16.83■□□□□ 0.29
PTPRF-215ENST00000496447 ANKRD30AQ9BXX3 1397 aa16.83■□□□□ 0.29
PTPRF-215ENST00000496447 VPS8Q8N3P4 1428 aa16.82■□□□□ 0.28
PTPRF-215ENST00000496447 ABCC8Q09428 1581 aa16.81■□□□□ 0.28
PTPRF-215ENST00000496447 EID1Q9Y6B2 187 aa16.81■□□□□ 0.28
PTPRF-215ENST00000496447 PTMAP06454 111 aaKnown RBP16.81■□□□□ 0.28
PTPRF-215ENST00000496447 HSPA5P11021 654 aaKnown RBP16.81■□□□□ 0.28
PTPRF-215ENST00000496447 ROCK2O75116 1388 aaKnown RBP16.8■□□□□ 0.28
PTPRF-215ENST00000496447 PPP4R2Q9NY27 417 aa16.8■□□□□ 0.28
PTPRF-215ENST00000496447 CCDC9Q9Y3X0 531 aaKnown RBP16.79■□□□□ 0.28
PTPRF-215ENST00000496447 KANK4Q5T7N3 995 aaPredicted RBP16.79■□□□□ 0.28
PTPRF-215ENST00000496447 KTN1Q86UP2 1357 aaKnown RBP16.79■□□□□ 0.28
PTPRF-215ENST00000496447 ZNF330Q9Y3S2 320 aaPredicted RBP16.78■□□□□ 0.28
PTPRF-215ENST00000496447 HNRNPMP52272 730 aaKnown RBP eCLIP16.78■□□□□ 0.28
PTPRF-215ENST00000496447 MPHOSPH9Q99550 1183 aa16.77■□□□□ 0.28
PTPRF-215ENST00000496447 SPAG9O60271 1321 aaKnown RBP16.77■□□□□ 0.28
PTPRF-215ENST00000496447 HSP90AB1P08238 724 aaKnown RBP16.77■□□□□ 0.28
PTPRF-215ENST00000496447 WASHC2CQ9Y4E1 1318 aa16.77■□□□□ 0.27
PTPRF-215ENST00000496447 TSHZ2Q9NRE2 1034 aa16.76■□□□□ 0.27
PTPRF-215ENST00000496447 U2AF1L5P0DN76 240 aaPredicted RBP16.76■□□□□ 0.27
PTPRF-215ENST00000496447 U2AF1Q01081 240 aaKnown RBP eCLIP16.76■□□□□ 0.27
PTPRF-215ENST00000496447 CADPSQ9ULU8 1353 aa16.75■□□□□ 0.27
PTPRF-215ENST00000496447 EIF3AQ14152 1382 aaKnown RBP16.75■□□□□ 0.27
PTPRF-215ENST00000496447 ISY1Q9ULR0 285 aaKnown RBP16.75■□□□□ 0.27
PTPRF-215ENST00000496447 CALD1Q05682 793 aaKnown RBP16.74■□□□□ 0.27
PTPRF-215ENST00000496447 NUTM2DQ5VT03 806 aaPredicted RBP16.73■□□□□ 0.27
PTPRF-215ENST00000496447 IPO8O15397 1037 aaKnown RBP16.72■□□□□ 0.27
PTPRF-215ENST00000496447 JPH4Q96JJ6 628 aa16.72■□□□□ 0.27
PTPRF-215ENST00000496447 MCCP23508 829 aa16.72■□□□□ 0.27
PTPRF-215ENST00000496447 RSPH4AQ5TD94 716 aa16.71■□□□□ 0.27
PTPRF-215ENST00000496447 NGDNQ8NEJ9 315 aaKnown RBP16.71■□□□□ 0.27
PTPRF-215ENST00000496447 TERF2IPQ9NYB0 399 aa16.71■□□□□ 0.26
PTPRF-215ENST00000496447 PLCB2Q00722 1185 aa16.7■□□□□ 0.26
PTPRF-215ENST00000496447 TMX4Q9H1E5 349 aaPredicted RBP16.7■□□□□ 0.26
PTPRF-215ENST00000496447 APBB1O00213 710 aa16.69■□□□□ 0.26
PTPRF-215ENST00000496447 RAPGEF2Q9Y4G8 1499 aa16.68■□□□□ 0.26
PTPRF-215ENST00000496447 FHOD3Q2V2M9 1422 aa16.68■□□□□ 0.26
PTPRF-215ENST00000496447 GOLGA6L4A6NEF3 574 aa16.68■□□□□ 0.26
PTPRF-215ENST00000496447 CCDC18Q5T9S5 1454 aa16.68■□□□□ 0.26
PTPRF-215ENST00000496447 DNTTIP2Q5QJE6 756 aaKnown RBP16.67■□□□□ 0.26
PTPRF-215ENST00000496447 B4GALNT3Q6L9W6 998 aa16.67■□□□□ 0.26
PTPRF-215ENST00000496447 L1TD1Q5T7N2 865 aaKnown RBP16.67■□□□□ 0.26
PTPRF-215ENST00000496447 RAB3GAP2Q9H2M9 1393 aa16.67■□□□□ 0.26
PTPRF-215ENST00000496447 CHMP4AQ9BY43 222 aa16.67■□□□□ 0.26
PTPRF-215ENST00000496447 HSCBQ8IWL3 235 aa16.66■□□□□ 0.26
PTPRF-215ENST00000496447 GOLGA6L6A8MZA4 724 aa16.66■□□□□ 0.26
PTPRF-215ENST00000496447 CCER2I3L3R5 266 aa16.66■□□□□ 0.26
PTPRF-215ENST00000496447 TOP2AP11388 1531 aaKnown RBP16.66■□□□□ 0.26
PTPRF-215ENST00000496447 RALBP1Q15311 655 aa16.65■□□□□ 0.26
PTPRF-215ENST00000496447 CFAP44Q96MT7 982 aa16.65■□□□□ 0.26
PTPRF-215ENST00000496447 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.65■□□□□ 0.26
PTPRF-215ENST00000496447 STK31Q9BXU1 1019 aa16.65■□□□□ 0.26
PTPRF-215ENST00000496447 NUTM2FA1L443 756 aa16.63■□□□□ 0.25
PTPRF-215ENST00000496447 CYB5RLQ6IPT4 315 aa16.63■□□□□ 0.25
PTPRF-215ENST00000496447 CLSTN1O94985 981 aa16.63■□□□□ 0.25
PTPRF-215ENST00000496447 AMPHP49418 695 aa16.63■□□□□ 0.25
PTPRF-215ENST00000496447 KIAA1211Q6ZU35 1233 aa16.63■□□□□ 0.25
PTPRF-215ENST00000496447 ITPRIPQ8IWB1 547 aa16.63■□□□□ 0.25
PTPRF-215ENST00000496447 CHMP3Q9Y3E7 222 aa16.61■□□□□ 0.25
PTPRF-215ENST00000496447 GNL2Q13823 731 aaKnown RBP16.61■□□□□ 0.25
PTPRF-215ENST00000496447 LTV1Q96GA3 475 aaPredicted RBP16.6■□□□□ 0.25
PTPRF-215ENST00000496447 TAF7LQ5H9L4 462 aa16.6■□□□□ 0.25
PTPRF-215ENST00000496447 GORABQ5T7V8 394 aa16.6■□□□□ 0.25
PTPRF-215ENST00000496447 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.6■□□□□ 0.25
PTPRF-215ENST00000496447 NRDCO43847 1150 aa16.59■□□□□ 0.25
PTPRF-215ENST00000496447 WIZO95785 1651 aa16.59■□□□□ 0.25
PTPRF-215ENST00000496447 TRAK1Q9UPV9 953 aa16.58■□□□□ 0.25
PTPRF-215ENST00000496447 OSCARQ8IYS5 282 aa16.58■□□□□ 0.24
PTPRF-215ENST00000496447 PTPRGP23470 1445 aa16.57■□□□□ 0.24
PTPRF-215ENST00000496447 L3MBTL2Q969R5 705 aa16.57■□□□□ 0.24
PTPRF-215ENST00000496447 HDAC5Q9UQL6 1122 aa16.56■□□□□ 0.24
PTPRF-215ENST00000496447 RWDD1Q9H446 243 aaPredicted RBP16.56■□□□□ 0.24
PTPRF-215ENST00000496447 RSPH6AQ9H0K4 717 aa16.55■□□□□ 0.24
PTPRF-215ENST00000496447 ATAD2BQ9ULI0 1458 aa16.55■□□□□ 0.24
PTPRF-215ENST00000496447 G3V3G9 751 aa16.55■□□□□ 0.24
PTPRF-215ENST00000496447 DCAF8Q5TAQ9 597 aa16.55■□□□□ 0.24
PTPRF-215ENST00000496447 RCAN3Q9UKA8 241 aa16.55■□□□□ 0.24
PTPRF-215ENST00000496447 FANCD2Q9BXW9 1451 aa16.55■□□□□ 0.24
PTPRF-215ENST00000496447 LMOD3Q0VAK6 560 aa16.55■□□□□ 0.24
PTPRF-215ENST00000496447 SMC4Q9NTJ3 1288 aa16.54■□□□□ 0.24
PTPRF-215ENST00000496447 SPRYD3Q8NCJ5 442 aa16.54■□□□□ 0.24
PTPRF-215ENST00000496447 GPATCH3Q96I76 525 aa16.53■□□□□ 0.24
PTPRF-215ENST00000496447 SLC4A10Q6U841 1118 aa16.52■□□□□ 0.24
PTPRF-215ENST00000496447 GTF2E1P29083 439 aaPredicted RBP16.52■□□□□ 0.24
PTPRF-215ENST00000496447 CCDC146Q8IYE0 955 aa16.52■□□□□ 0.23
PTPRF-215ENST00000496447 CCDC144AA2RUR9 1427 aa16.51■□□□□ 0.23
PTPRF-215ENST00000496447 HMMRO75330 724 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms