RNA–Protein interactions for RNA: ENST00000496385.5

HPS4-217, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 2,772 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-217ENST00000496385 KDM5BQ9UGL1 1544 aa12.46□□□□□ -0.41
HPS4-217ENST00000496385 C11orf95C9JLR9 678 aaPredicted RBP12.46□□□□□ -0.41
HPS4-217ENST00000496385 ASXL2Q76L83 1435 aa12.46□□□□□ -0.41
HPS4-217ENST00000496385 RRBP1Q9P2E9 1410 aaKnown RBP12.46□□□□□ -0.41
HPS4-217ENST00000496385 LRRIQ1Q96JM4 1722 aa12.45□□□□□ -0.42
HPS4-217ENST00000496385 DDX10Q13206 875 aaKnown RBP12.45□□□□□ -0.42
HPS4-217ENST00000496385 TRIM52Q96A61 297 aa12.45□□□□□ -0.42
HPS4-217ENST00000496385 USP35Q9P2H5 1018 aa12.44□□□□□ -0.42
HPS4-217ENST00000496385 CASKIN1Q8WXD9 1431 aa12.44□□□□□ -0.42
HPS4-217ENST00000496385 FAM69CQ0P6D2 419 aa12.43□□□□□ -0.42
HPS4-217ENST00000496385 EPRSP07814 1512 aaKnown RBP12.43□□□□□ -0.42
HPS4-217ENST00000496385 HECW1Q76N89 1606 aa12.43□□□□□ -0.42
HPS4-217ENST00000496385 NBR1Q14596 966 aa12.42□□□□□ -0.42
HPS4-217ENST00000496385 WASHC2AQ641Q2 1341 aa12.42□□□□□ -0.42
HPS4-217ENST00000496385 IPO9Q96P70 1041 aaKnown RBP12.41□□□□□ -0.42
HPS4-217ENST00000496385 FYCO1Q9BQS8 1478 aa12.4□□□□□ -0.42
HPS4-217ENST00000496385 CCDC136Q96JN2 1154 aa12.4□□□□□ -0.42
HPS4-217ENST00000496385 MAPKBP1O60336 1514 aa12.4□□□□□ -0.42
HPS4-217ENST00000496385 IL27Q8NEV9 243 aa12.4□□□□□ -0.43
HPS4-217ENST00000496385 PLEKHD1A6NEE1 506 aa12.39□□□□□ -0.43
HPS4-217ENST00000496385 WDR7Q9Y4E6 1490 aa12.39□□□□□ -0.43
HPS4-217ENST00000496385 ANP32AP39687 249 aaKnown RBP12.39□□□□□ -0.43
HPS4-217ENST00000496385 PAK3O75914 559 aaPredicted RBP12.38□□□□□ -0.43
HPS4-217ENST00000496385 WASHC2CQ9Y4E1 1318 aa12.38□□□□□ -0.43
HPS4-217ENST00000496385 ZBTB47Q9UFB7 747 aaPredicted RBP12.37□□□□□ -0.43
HPS4-217ENST00000496385 KIF13AQ9H1H9 1805 aa12.37□□□□□ -0.43
HPS4-217ENST00000496385 ABCC10Q5T3U5 1492 aa12.36□□□□□ -0.43
HPS4-217ENST00000496385 DIP2BQ9P265 1576 aa12.36□□□□□ -0.43
HPS4-217ENST00000496385 TSPOAP1O95153 1857 aa12.36□□□□□ -0.43
HPS4-217ENST00000496385 MAGI3Q5TCQ9 1506 aa12.36□□□□□ -0.43
HPS4-217ENST00000496385 KANK4Q5T7N3 995 aaPredicted RBP12.35□□□□□ -0.43
HPS4-217ENST00000496385 CCDC18Q5T9S5 1454 aa12.34□□□□□ -0.43
HPS4-217ENST00000496385 KIF14Q15058 1648 aa12.33□□□□□ -0.44
HPS4-217ENST00000496385 MTUS2Q5JR59 1369 aa12.32□□□□□ -0.44
HPS4-217ENST00000496385 EIF5BO60841 1220 aaKnown RBP12.31□□□□□ -0.44
HPS4-217ENST00000496385 CCNB3Q8WWL7 1395 aa12.31□□□□□ -0.44
HPS4-217ENST00000496385 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.31□□□□□ -0.44
HPS4-217ENST00000496385 HNRNPUQ00839 825 aaKnown RBP eCLIP12.3□□□□□ -0.44
HPS4-217ENST00000496385 PKNOX2Q96KN3 472 aa12.3□□□□□ -0.44
HPS4-217ENST00000496385 TROQ12816 1431 aaPredicted RBP12.3□□□□□ -0.44
HPS4-217ENST00000496385 TIAM1Q13009 1591 aa12.3□□□□□ -0.44
HPS4-217ENST00000496385 RSPH6AQ9H0K4 717 aa12.3□□□□□ -0.44
HPS4-217ENST00000496385 TTC37Q6PGP7 1564 aa12.29□□□□□ -0.44
HPS4-217ENST00000496385 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.28□□□□□ -0.44
HPS4-217ENST00000496385 CD109Q6YHK3 1445 aa12.28□□□□□ -0.44
HPS4-217ENST00000496385 CFAP43Q8NDM7 1665 aa12.28□□□□□ -0.44
HPS4-217ENST00000496385 RAB3GAP2Q9H2M9 1393 aa12.28□□□□□ -0.44
HPS4-217ENST00000496385 PPM1GO15355 546 aaPredicted RBP12.28□□□□□ -0.44
HPS4-217ENST00000496385 IRX6P78412 446 aaPredicted RBP12.27□□□□□ -0.45
HPS4-217ENST00000496385 RTN4Q9NQC3 1192 aaKnown RBP12.27□□□□□ -0.45
HPS4-217ENST00000496385 GLIPR1L2Q4G1C9 344 aa12.26□□□□□ -0.45
HPS4-217ENST00000496385 LRRC9Q6ZRR7 1453 aa12.26□□□□□ -0.45
HPS4-217ENST00000496385 MAP3K4Q9Y6R4 1608 aa12.25□□□□□ -0.45
HPS4-217ENST00000496385 GLI2P10070 1586 aa12.25□□□□□ -0.45
HPS4-217ENST00000496385 ZNF777Q9ULD5 760 aaPredicted RBP12.25□□□□□ -0.45
HPS4-217ENST00000496385 SETD5Q9C0A6 1442 aa12.25□□□□□ -0.45
HPS4-217ENST00000496385 ABCA9Q8IUA7 1624 aa12.25□□□□□ -0.45
HPS4-217ENST00000496385 PPRC1Q5VV67 1664 aaKnown RBP12.24□□□□□ -0.45
HPS4-217ENST00000496385 B4GALNT3Q6L9W6 998 aa12.24□□□□□ -0.45
HPS4-217ENST00000496385 EHBP1L1Q8N3D4 1523 aa12.23□□□□□ -0.45
HPS4-217ENST00000496385 NCOA2Q15596 1464 aa12.21□□□□□ -0.45
HPS4-217ENST00000496385 ZBED9Q6R2W3 1325 aa12.21□□□□□ -0.45
HPS4-217ENST00000496385 NEFMP07197 916 aa12.2□□□□□ -0.46
HPS4-217ENST00000496385 ARHGAP5Q13017 1502 aa12.2□□□□□ -0.46
HPS4-217ENST00000496385 ZNF644Q9H582 1327 aaPredicted RBP12.2□□□□□ -0.46
HPS4-217ENST00000496385 MYO5CQ9NQX4 1742 aa12.2□□□□□ -0.46
HPS4-217ENST00000496385 SUPT6HQ7KZ85 1726 aaKnown RBP12.19□□□□□ -0.46
HPS4-217ENST00000496385 FANCAO15360 1455 aa12.19□□□□□ -0.46
HPS4-217ENST00000496385 MAP3K1Q13233 1512 aa12.19□□□□□ -0.46
HPS4-217ENST00000496385 PLCH2O75038 1416 aa12.18□□□□□ -0.46
HPS4-217ENST00000496385 CDC42BPAQ5VT25 1732 aa12.18□□□□□ -0.46
HPS4-217ENST00000496385 CFDP1Q9UEE9 299 aaPredicted RBP12.18□□□□□ -0.46
HPS4-217ENST00000496385 GPATCH8Q9UKJ3 1502 aaKnown RBP12.18□□□□□ -0.46
HPS4-217ENST00000496385 COL17A1Q9UMD9 1497 aaPredicted RBP12.18□□□□□ -0.46
HPS4-217ENST00000496385 RAPGEF3O95398 923 aa12.18□□□□□ -0.46
HPS4-217ENST00000496385 CDC42BPBQ9Y5S2 1711 aa12.18□□□□□ -0.46
HPS4-217ENST00000496385 FAM43AQ8N2R8 423 aa12.18□□□□□ -0.46
HPS4-217ENST00000496385 PHLDB1Q86UU1 1377 aa12.17□□□□□ -0.46
HPS4-217ENST00000496385 GSE1Q14687 1217 aa12.17□□□□□ -0.46
HPS4-217ENST00000496385 TEX14Q8IWB6 1497 aa12.17□□□□□ -0.46
HPS4-217ENST00000496385 RNF123Q5XPI4 1314 aa12.16□□□□□ -0.46
HPS4-217ENST00000496385 EFCAB2Q5VUJ9 269 aa12.16□□□□□ -0.46
HPS4-217ENST00000496385 PREX2Q70Z35 1606 aa12.15□□□□□ -0.46
HPS4-217ENST00000496385 AKNAQ7Z591 1439 aa12.15□□□□□ -0.46
HPS4-217ENST00000496385 KDM6BO15054 1643 aa12.15□□□□□ -0.47
HPS4-217ENST00000496385 HNRNPMP52272 730 aaKnown RBP eCLIP12.14□□□□□ -0.47
HPS4-217ENST00000496385 SIN3AQ96ST3 1273 aa12.14□□□□□ -0.47
HPS4-217ENST00000496385 SMG6Q86US8 1419 aaKnown RBP12.14□□□□□ -0.47
HPS4-217ENST00000496385 AFAP1Q8N556 730 aa12.13□□□□□ -0.47
HPS4-217ENST00000496385 ADGRL1O94910 1474 aa12.13□□□□□ -0.47
HPS4-217ENST00000496385 SCAPERQ9BY12 1400 aa12.13□□□□□ -0.47
HPS4-217ENST00000496385 TCERG1O14776 1098 aaKnown RBP12.12□□□□□ -0.47
HPS4-217ENST00000496385 SAMD9LQ8IVG5 1584 aa12.11□□□□□ -0.47
HPS4-217ENST00000496385 BRPF3Q9ULD4 1205 aa12.11□□□□□ -0.47
HPS4-217ENST00000496385 MYOM3Q5VTT5 1437 aa12.11□□□□□ -0.47
HPS4-217ENST00000496385 ARHGEF12Q9NZN5 1544 aa12.11□□□□□ -0.47
HPS4-217ENST00000496385 FAM50AQ14320 339 aaKnown RBP12.11□□□□□ -0.47
HPS4-217ENST00000496385 DDRGK1Q96HY6 314 aa12.11□□□□□ -0.47
HPS4-217ENST00000496385 NEO1Q92859 1461 aa12.11□□□□□ -0.47
HPS4-217ENST00000496385 MS4A1P11836 297 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms