RNA–Protein interactions for RNA: ENST00000495755.1

VPS52-221, Transcript of VPS52, GARP complex subunit, human

TSL 5

Gene VPS52, Length 453 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-221	ENST00000495755	ARHGEF40	Q8TER5	1519 aa		11.65	□□□□□ -0.55
VPS52-221	ENST00000495755	YEATS2	Q9ULM3	1422 aa		11.64	□□□□□ -0.55
VPS52-221	ENST00000495755	ARID4B	Q4LE39	1312 aa	Predicted RBP	11.63	□□□□□ -0.55
VPS52-221	ENST00000495755	ADAMTSL3	P82987	1691 aa		11.63	□□□□□ -0.55
VPS52-221	ENST00000495755	ARHGAP5	Q13017	1502 aa		11.63	□□□□□ -0.55
VPS52-221	ENST00000495755	CEP162	Q5TB80	1403 aa		11.62	□□□□□ -0.55
VPS52-221	ENST00000495755	ZFYVE16	Q7Z3T8	1539 aa		11.62	□□□□□ -0.55
VPS52-221	ENST00000495755	BCORL1	Q5H9F3	1711 aa		11.61	□□□□□ -0.55
VPS52-221	ENST00000495755	CDC42BPB	Q9Y5S2	1711 aa		11.61	□□□□□ -0.55
VPS52-221	ENST00000495755	AFAP1	Q8N556	730 aa		11.61	□□□□□ -0.55
VPS52-221	ENST00000495755	PTPRM	P28827	1452 aa		11.6	□□□□□ -0.55
VPS52-221	ENST00000495755	LOC105371045	A0A1W2PR82	267 aa		11.6	□□□□□ -0.55
VPS52-221	ENST00000495755	ZNF518A	Q6AHZ1	1483 aa		11.59	□□□□□ -0.55
VPS52-221	ENST00000495755	PREX2	Q70Z35	1606 aa		11.59	□□□□□ -0.55
VPS52-221	ENST00000495755	ARHGEF12	Q9NZN5	1544 aa		11.59	□□□□□ -0.55
VPS52-221	ENST00000495755	ATP10A	O60312	1499 aa		11.58	□□□□□ -0.56
VPS52-221	ENST00000495755	SIGLEC1	Q9BZZ2	1709 aa		11.58	□□□□□ -0.56
VPS52-221	ENST00000495755	GPATCH8	Q9UKJ3	1502 aa	Known RBP	11.58	□□□□□ -0.56
VPS52-221	ENST00000495755	KDM5C	P41229	1560 aa		11.58	□□□□□ -0.56
VPS52-221	ENST00000495755	MADD	Q8WXG6	1647 aa		11.57	□□□□□ -0.56
VPS52-221	ENST00000495755	TRAPPC8	Q9Y2L5	1435 aa		11.57	□□□□□ -0.56
VPS52-221	ENST00000495755	HECW2	Q9P2P5	1572 aa		11.57	□□□□□ -0.56
VPS52-221	ENST00000495755	CDC42BPA	Q5VT25	1732 aa		11.57	□□□□□ -0.56
VPS52-221	ENST00000495755	ABCC1	P33527	1531 aa		11.56	□□□□□ -0.56
VPS52-221	ENST00000495755	C9orf84	Q5VXU9	1444 aa		11.56	□□□□□ -0.56
VPS52-221	ENST00000495755	MLH3	Q9UHC1	1453 aa		11.56	□□□□□ -0.56
VPS52-221	ENST00000495755	MTUS2	Q5JR59	1369 aa		11.55	□□□□□ -0.56
VPS52-221	ENST00000495755	MLEC	Q14165	292 aa		11.54	□□□□□ -0.56
VPS52-221	ENST00000495755	ZNF777	Q9ULD5	760 aa	Predicted RBP	11.54	□□□□□ -0.56
VPS52-221	ENST00000495755	CCNB3	Q8WWL7	1395 aa		11.54	□□□□□ -0.56
VPS52-221	ENST00000495755	CFDP1	Q9UEE9	299 aa	Predicted RBP	11.53	□□□□□ -0.56
VPS52-221	ENST00000495755	ITSN2	Q9NZM3	1697 aa		11.52	□□□□□ -0.56
VPS52-221	ENST00000495755	KIAA1107	Q9UPP5	1409 aa		11.52	□□□□□ -0.56
VPS52-221	ENST00000495755	HNRNPM	P52272	730 aa	Known RBP eCLIP	11.52	□□□□□ -0.57
VPS52-221	ENST00000495755	MYT1L	Q9UL68	1186 aa		11.52	□□□□□ -0.57
VPS52-221	ENST00000495755	SAMD9L	Q8IVG5	1584 aa		11.52	□□□□□ -0.57
VPS52-221	ENST00000495755	DIP2C	Q9Y2E4	1556 aa		11.52	□□□□□ -0.57
VPS52-221	ENST00000495755	RIMS1	Q86UR5	1692 aa	Known RBP	11.52	□□□□□ -0.57
VPS52-221	ENST00000495755	EHBP1L1	Q8N3D4	1523 aa		11.51	□□□□□ -0.57
VPS52-221	ENST00000495755	RERE	Q9P2R6	1566 aa		11.51	□□□□□ -0.57
VPS52-221	ENST00000495755	PLEKHH2	Q8IVE3	1493 aa		11.51	□□□□□ -0.57
VPS52-221	ENST00000495755	ABCA6	Q8N139	1617 aa		11.5	□□□□□ -0.57
VPS52-221	ENST00000495755	VPS8	Q8N3P4	1428 aa		11.5	□□□□□ -0.57
VPS52-221	ENST00000495755	SYCP2	Q9BX26	1530 aa		11.5	□□□□□ -0.57
VPS52-221	ENST00000495755	SPAG9	O60271	1321 aa	Known RBP	11.49	□□□□□ -0.57
VPS52-221	ENST00000495755	ZNF644	Q9H582	1327 aa	Predicted RBP	11.49	□□□□□ -0.57
VPS52-221	ENST00000495755	AGL	P35573	1532 aa		11.49	□□□□□ -0.57
VPS52-221	ENST00000495755	TIAM1	Q13009	1591 aa		11.49	□□□□□ -0.57
VPS52-221	ENST00000495755	KIDINS220	Q9ULH0	1771 aa		11.49	□□□□□ -0.57
VPS52-221	ENST00000495755	LMTK3	Q96Q04	1460 aa		11.48	□□□□□ -0.57
VPS52-221	ENST00000495755	FER1L4	A9Z1Z3	1794 aa		11.47	□□□□□ -0.57
VPS52-221	ENST00000495755	NCOA2	Q15596	1464 aa		11.46	□□□□□ -0.57
VPS52-221	ENST00000495755	MBD5	Q9P267	1494 aa		11.46	□□□□□ -0.57
VPS52-221	ENST00000495755	PLPPR3	Q6T4P5	718 aa		11.46	□□□□□ -0.57
VPS52-221	ENST00000495755	CEBPA	P49715	358 aa	Predicted RBP	11.45	□□□□□ -0.58
VPS52-221	ENST00000495755	LRRC9	Q6ZRR7	1453 aa		11.44	□□□□□ -0.58
VPS52-221	ENST00000495755	ATP7A	Q04656	1500 aa		11.44	□□□□□ -0.58
VPS52-221	ENST00000495755	MAP3K1	Q13233	1512 aa		11.44	□□□□□ -0.58
VPS52-221	ENST00000495755	SUPT6H	Q7KZ85	1726 aa	Known RBP	11.43	□□□□□ -0.58
VPS52-221	ENST00000495755	INO80	Q9ULG1	1556 aa	Predicted RBP	11.43	□□□□□ -0.58
VPS52-221	ENST00000495755	KANK4	Q5T7N3	995 aa	Predicted RBP	11.43	□□□□□ -0.58
VPS52-221	ENST00000495755	HSPA2	P54652	639 aa		11.42	□□□□□ -0.58
VPS52-221	ENST00000495755	A2M	P01023	1474 aa		11.41	□□□□□ -0.58
VPS52-221	ENST00000495755	RSPH4A	Q5TD94	716 aa		11.41	□□□□□ -0.58
VPS52-221	ENST00000495755	RTEL1-TNFRSF6B	F6WH68	1400 aa		11.41	□□□□□ -0.58
VPS52-221	ENST00000495755	PLXNC1	O60486	1568 aa		11.41	□□□□□ -0.58
VPS52-221	ENST00000495755	ESF1	Q9H501	851 aa	Known RBP	11.4	□□□□□ -0.58
VPS52-221	ENST00000495755	CAMSAP2	Q08AD1	1489 aa		11.39	□□□□□ -0.59
VPS52-221	ENST00000495755	CNTLN	Q9NXG0	1405 aa		11.39	□□□□□ -0.59
VPS52-221	ENST00000495755	CCDC141	Q6ZP82	1450 aa		11.38	□□□□□ -0.59
VPS52-221	ENST00000495755	ILDR1	Q86SU0	546 aa	Predicted RBP	11.38	□□□□□ -0.59
VPS52-221	ENST00000495755	DHX29	Q7Z478	1369 aa	Known RBP	11.38	□□□□□ -0.59
VPS52-221	ENST00000495755	C3	P01024	1663 aa		11.37	□□□□□ -0.59
VPS52-221	ENST00000495755	PPP6R1	Q9UPN7	881 aa		11.37	□□□□□ -0.59
VPS52-221	ENST00000495755	ZMYM3	Q14202	1370 aa		11.37	□□□□□ -0.59
VPS52-221	ENST00000495755	GGT6	Q6P531	493 aa		11.36	□□□□□ -0.59
VPS52-221	ENST00000495755	ARHGEF5	Q12774	1597 aa		11.36	□□□□□ -0.59
VPS52-221	ENST00000495755	ADGB	Q8N7X0	1667 aa		11.36	□□□□□ -0.59
VPS52-221	ENST00000495755	PREX1	Q8TCU6	1659 aa		11.36	□□□□□ -0.59
VPS52-221	ENST00000495755	SETD1B	Q9UPS6	1966 aa	Known RBP	11.36	□□□□□ -0.59
VPS52-221	ENST00000495755	MYOM3	Q5VTT5	1437 aa		11.35	□□□□□ -0.59
VPS52-221	ENST00000495755	UHRF1BP1	Q6BDS2	1440 aa		11.35	□□□□□ -0.59
VPS52-221	ENST00000495755	MIA2	Q96PC5	1412 aa		11.35	□□□□□ -0.59
VPS52-221	ENST00000495755	TSPY4	P0CV99	314 aa		11.35	□□□□□ -0.59
VPS52-221	ENST00000495755	TSPY10	P0CW01	314 aa		11.35	□□□□□ -0.59
VPS52-221	ENST00000495755	APLP2	Q06481	763 aa		11.34	□□□□□ -0.59
VPS52-221	ENST00000495755	NPAT	Q14207	1427 aa		11.34	□□□□□ -0.59
VPS52-221	ENST00000495755	MROH2A	A6NES4	1674 aa		11.33	□□□□□ -0.6
VPS52-221	ENST00000495755	KIF3B	O15066	747 aa		11.32	□□□□□ -0.6
VPS52-221	ENST00000495755	CLTC	Q00610	1675 aa	Known RBP	11.31	□□□□□ -0.6
VPS52-221	ENST00000495755	PTPRK	Q15262	1439 aa		11.31	□□□□□ -0.6
VPS52-221	ENST00000495755	MAST1	Q9Y2H9	1570 aa		11.3	□□□□□ -0.6
VPS52-221	ENST00000495755	DMRT2	Q9Y5R5	561 aa		11.29	□□□□□ -0.6
VPS52-221	ENST00000495755	STRC	Q7RTU9	1775 aa		11.28	□□□□□ -0.6
VPS52-221	ENST00000495755	ABCC5	O15440	1437 aa		11.27	□□□□□ -0.6
VPS52-221	ENST00000495755	FBXO41	Q8TF61	875 aa		11.27	□□□□□ -0.61
VPS52-221	ENST00000495755	WASHC2C	Q9Y4E1	1318 aa		11.27	□□□□□ -0.61
VPS52-221	ENST00000495755	FGD6	Q6ZV73	1430 aa		11.26	□□□□□ -0.61
VPS52-221	ENST00000495755	FAM135A	Q9P2D6	1515 aa		11.26	□□□□□ -0.61
VPS52-221	ENST00000495755	PTPN23	Q9H3S7	1636 aa		11.26	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms