RNA–Protein interactions for RNA: ENST00000495122.1

CBX4-204, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 490 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-204ENST00000495122 SIGLEC1Q9BZZ2 1709 aa24.96■■□□□ 1.59
CBX4-204ENST00000495122 HECW2Q9P2P5 1572 aa24.96■■□□□ 1.59
CBX4-204ENST00000495122 PLCH2O75038 1416 aa24.93■■□□□ 1.58
CBX4-204ENST00000495122 MAP3K1Q13233 1512 aa24.92■■□□□ 1.58
CBX4-204ENST00000495122 MADDQ8WXG6 1647 aa24.92■■□□□ 1.58
CBX4-204ENST00000495122 TROQ12816 1431 aaPredicted RBP24.92■■□□□ 1.58
CBX4-204ENST00000495122 CCDC18Q5T9S5 1454 aa24.91■■□□□ 1.58
CBX4-204ENST00000495122 PREX2Q70Z35 1606 aa24.91■■□□□ 1.58
CBX4-204ENST00000495122 CDC42BPAQ5VT25 1732 aa24.9■■□□□ 1.58
CBX4-204ENST00000495122 CASKIN1Q8WXD9 1431 aa24.9■■□□□ 1.58
CBX4-204ENST00000495122 ZFYVE16Q7Z3T8 1539 aa24.9■■□□□ 1.58
CBX4-204ENST00000495122 ATP1B4Q9UN42 357 aaPredicted RBP24.89■■□□□ 1.58
CBX4-204ENST00000495122 FYCO1Q9BQS8 1478 aa24.88■■□□□ 1.57
CBX4-204ENST00000495122 RIMS1Q86UR5 1692 aaKnown RBP24.88■■□□□ 1.57
CBX4-204ENST00000495122 POGZQ7Z3K3 1410 aa24.86■■□□□ 1.57
CBX4-204ENST00000495122 CDK11AQ9UQ88 783 aaPredicted RBP24.84■■□□□ 1.57
CBX4-204ENST00000495122 MAGI2Q86UL8 1455 aa24.83■■□□□ 1.57
CBX4-204ENST00000495122 FER1L4A9Z1Z3 1794 aa24.83■■□□□ 1.57
CBX4-204ENST00000495122 ARHGAP5Q13017 1502 aa24.83■■□□□ 1.57
CBX4-204ENST00000495122 ITSN2Q9NZM3 1697 aa24.83■■□□□ 1.57
CBX4-204ENST00000495122 ZEB1P37275 1124 aaPredicted RBP24.82■■□□□ 1.56
CBX4-204ENST00000495122 PPARGC1BQ86YN6 1023 aaKnown RBP24.82■■□□□ 1.56
CBX4-204ENST00000495122 SCAPERQ9BY12 1400 aa24.81■■□□□ 1.56
CBX4-204ENST00000495122 PTPRMP28827 1452 aa24.81■■□□□ 1.56
CBX4-204ENST00000495122 KDM5CP41229 1560 aa24.8■■□□□ 1.56
CBX4-204ENST00000495122 YEATS2Q9ULM3 1422 aa24.8■■□□□ 1.56
CBX4-204ENST00000495122 ABCC1P33527 1531 aa24.76■■□□□ 1.55
CBX4-204ENST00000495122 ZNF518AQ6AHZ1 1483 aa24.74■■□□□ 1.55
CBX4-204ENST00000495122 EFCAB2Q5VUJ9 269 aa24.73■■□□□ 1.55
CBX4-204ENST00000495122 TIAM1Q13009 1591 aa24.72■■□□□ 1.55
CBX4-204ENST00000495122 ABCA6Q8N139 1617 aa24.72■■□□□ 1.55
CBX4-204ENST00000495122 DIP2CQ9Y2E4 1556 aa24.71■■□□□ 1.55
CBX4-204ENST00000495122 ARID4BQ4LE39 1312 aaPredicted RBP24.7■■□□□ 1.54
CBX4-204ENST00000495122 C9orf84Q5VXU9 1444 aa24.68■■□□□ 1.54
CBX4-204ENST00000495122 REREQ9P2R6 1566 aa24.67■■□□□ 1.54
CBX4-204ENST00000495122 KIDINS220Q9ULH0 1771 aa24.67■■□□□ 1.54
CBX4-204ENST00000495122 SAMD9LQ8IVG5 1584 aa24.67■■□□□ 1.54
CBX4-204ENST00000495122 ATP10AO60312 1499 aa24.66■■□□□ 1.54
CBX4-204ENST00000495122 ARHGEF12Q9NZN5 1544 aa24.65■■□□□ 1.54
CBX4-204ENST00000495122 ILDR1Q86SU0 546 aaPredicted RBP24.62■■□□□ 1.53
CBX4-204ENST00000495122 MLH3Q9UHC1 1453 aa24.6■■□□□ 1.53
CBX4-204ENST00000495122 RRBP1Q9P2E9 1410 aaKnown RBP24.59■■□□□ 1.53
CBX4-204ENST00000495122 LMTK3Q96Q04 1460 aa24.58■■□□□ 1.53
CBX4-204ENST00000495122 EHBP1L1Q8N3D4 1523 aa24.58■■□□□ 1.53
CBX4-204ENST00000495122 SYCP2Q9BX26 1530 aa24.58■■□□□ 1.53
CBX4-204ENST00000495122 TRAPPC8Q9Y2L5 1435 aa24.58■■□□□ 1.53
CBX4-204ENST00000495122 LRRC9Q6ZRR7 1453 aa24.58■■□□□ 1.52
CBX4-204ENST00000495122 GPATCH8Q9UKJ3 1502 aaKnown RBP24.57■■□□□ 1.52
CBX4-204ENST00000495122 PREX1Q8TCU6 1659 aa24.56■■□□□ 1.52
CBX4-204ENST00000495122 AFAP1Q8N556 730 aa24.54■■□□□ 1.52
CBX4-204ENST00000495122 INO80Q9ULG1 1556 aaPredicted RBP24.53■■□□□ 1.52
CBX4-204ENST00000495122 C3P01024 1663 aa24.53■■□□□ 1.52
CBX4-204ENST00000495122 AGLP35573 1532 aa24.52■■□□□ 1.52
CBX4-204ENST00000495122 KANK4Q5T7N3 995 aaPredicted RBP24.52■■□□□ 1.52
CBX4-204ENST00000495122 SUPT6HQ7KZ85 1726 aaKnown RBP24.51■■□□□ 1.51
CBX4-204ENST00000495122 MTUS2Q5JR59 1369 aa24.49■■□□□ 1.51
CBX4-204ENST00000495122 SETD1BQ9UPS6 1966 aaKnown RBP24.49■■□□□ 1.51
CBX4-204ENST00000495122 MLECQ14165 292 aa24.48■■□□□ 1.51
CBX4-204ENST00000495122 ADGBQ8N7X0 1667 aa24.46■■□□□ 1.51
CBX4-204ENST00000495122 ATP7AQ04656 1500 aa24.46■■□□□ 1.51
CBX4-204ENST00000495122 PLEKHH2Q8IVE3 1493 aa24.46■■□□□ 1.51
CBX4-204ENST00000495122 MROH2AA6NES4 1674 aa24.45■■□□□ 1.5
CBX4-204ENST00000495122 CCNB3Q8WWL7 1395 aa24.44■■□□□ 1.5
CBX4-204ENST00000495122 PLXNC1O60486 1568 aa24.43■■□□□ 1.5
CBX4-204ENST00000495122 KIAA1107Q9UPP5 1409 aa24.43■■□□□ 1.5
CBX4-204ENST00000495122 MYT1LQ9UL68 1186 aa24.42■■□□□ 1.5
CBX4-204ENST00000495122 ZNF777Q9ULD5 760 aaPredicted RBP24.4■■□□□ 1.5
CBX4-204ENST00000495122 PLPPR3Q6T4P5 718 aa24.38■■□□□ 1.49
CBX4-204ENST00000495122 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.37■■□□□ 1.491e-12■■□□□ 11.4
CBX4-204ENST00000495122 CLTCQ00610 1675 aaKnown RBP24.37■■□□□ 1.49
CBX4-204ENST00000495122 CCER1Q8TC90 406 aaPredicted RBP24.36■■□□□ 1.49
CBX4-204ENST00000495122 CFDP1Q9UEE9 299 aaPredicted RBP24.36■■□□□ 1.49
CBX4-204ENST00000495122 STRCQ7RTU9 1775 aa24.35■■□□□ 1.49
CBX4-204ENST00000495122 NCOA2Q15596 1464 aa24.34■■□□□ 1.49
CBX4-204ENST00000495122 HNRNPMP52272 730 aaKnown RBP eCLIP24.34■■□□□ 1.49
CBX4-204ENST00000495122 SPAG9O60271 1321 aaKnown RBP24.33■■□□□ 1.48
CBX4-204ENST00000495122 MBD5Q9P267 1494 aa24.32■■□□□ 1.48
CBX4-204ENST00000495122 A2MP01023 1474 aa24.3■■□□□ 1.48
CBX4-204ENST00000495122 CAMSAP2Q08AD1 1489 aa24.3■■□□□ 1.48
CBX4-204ENST00000495122 HSPA2P54652 639 aa24.29■■□□□ 1.48
CBX4-204ENST00000495122 CNTLNQ9NXG0 1405 aa24.28■■□□□ 1.48
CBX4-204ENST00000495122 CEBPAP49715 358 aaPredicted RBP24.28■■□□□ 1.48
CBX4-204ENST00000495122 ARHGEF5Q12774 1597 aa24.27■■□□□ 1.48
CBX4-204ENST00000495122 ZNF644Q9H582 1327 aaPredicted RBP24.26■■□□□ 1.47
CBX4-204ENST00000495122 UHRF1BP1Q6BDS2 1440 aa24.25■■□□□ 1.47
CBX4-204ENST00000495122 ZNF142P52746 1687 aaPredicted RBP24.24■■□□□ 1.47
CBX4-204ENST00000495122 CCDC141Q6ZP82 1450 aa24.24■■□□□ 1.47
CBX4-204ENST00000495122 RTEL1-TNFRSF6BF6WH68 1400 aa24.22■■□□□ 1.47
CBX4-204ENST00000495122 CLSPNQ9HAW4 1339 aa24.22■■□□□ 1.47
CBX4-204ENST00000495122 MYO3AQ8NEV4 1616 aa24.21■■□□□ 1.47
CBX4-204ENST00000495122 ESF1Q9H501 851 aaKnown RBP24.18■■□□□ 1.46
CBX4-204ENST00000495122 FGD6Q6ZV73 1430 aa24.18■■□□□ 1.46
CBX4-204ENST00000495122 MAST1Q9Y2H9 1570 aa24.17■■□□□ 1.46
CBX4-204ENST00000495122 MYOM3Q5VTT5 1437 aa24.17■■□□□ 1.46
CBX4-204ENST00000495122 CROCC2H7BZ55 1655 aa24.16■■□□□ 1.46
CBX4-204ENST00000495122 NPATQ14207 1427 aa24.16■■□□□ 1.46
CBX4-204ENST00000495122 FBXO41Q8TF61 875 aa24.13■■□□□ 1.45
CBX4-204ENST00000495122 FAM135AQ9P2D6 1515 aa24.12■■□□□ 1.45
CBX4-204ENST00000495122 RNF17Q9BXT8 1623 aaKnown RBP24.1■■□□□ 1.45
CBX4-204ENST00000495122 ZMYM3Q14202 1370 aa24.1■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms