RNA–Protein interactions for RNA: ENST00000494956.1

NELFE-213, Transcript of negative elongation factor complex member E, humanhuman

TSL 3

Gene NELFE, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-213ENST00000494956 SCAPERQ9BY12 1400 aa17.16■□□□□ 0.34
NELFE-213ENST00000494956 CEP162Q5TB80 1403 aa17.15■□□□□ 0.34
NELFE-213ENST00000494956 SIGLEC1Q9BZZ2 1709 aa17.15■□□□□ 0.34
NELFE-213ENST00000494956 ARHGAP5Q13017 1502 aa17.15■□□□□ 0.34
NELFE-213ENST00000494956 YEATS2Q9ULM3 1422 aa17.14■□□□□ 0.33
NELFE-213ENST00000494956 ARHGEF40Q8TER5 1519 aa17.14■□□□□ 0.33
NELFE-213ENST00000494956 EFCAB2Q5VUJ9 269 aa17.13■□□□□ 0.33
NELFE-213ENST00000494956 POGZQ7Z3K3 1410 aa17.12■□□□□ 0.33
NELFE-213ENST00000494956 ZMYM4Q5VZL5 1548 aa17.11■□□□□ 0.33
NELFE-213ENST00000494956 ADAMTSL3P82987 1691 aa17.11■□□□□ 0.33
NELFE-213ENST00000494956 CDC42BPAQ5VT25 1732 aa17.11■□□□□ 0.33
NELFE-213ENST00000494956 ARID4BQ4LE39 1312 aaPredicted RBP17.11■□□□□ 0.33
NELFE-213ENST00000494956 ZFYVE16Q7Z3T8 1539 aa17.11■□□□□ 0.33
NELFE-213ENST00000494956 PREX2Q70Z35 1606 aa17.1■□□□□ 0.33
NELFE-213ENST00000494956 BCORL1Q5H9F3 1711 aa17.1■□□□□ 0.33
NELFE-213ENST00000494956 AFAP1Q8N556 730 aa17.07■□□□□ 0.32
NELFE-213ENST00000494956 MADDQ8WXG6 1647 aa17.07■□□□□ 0.32
NELFE-213ENST00000494956 ARHGEF12Q9NZN5 1544 aa17.06■□□□□ 0.32
NELFE-213ENST00000494956 TRAPPC8Q9Y2L5 1435 aa17.04■□□□□ 0.32
NELFE-213ENST00000494956 ITSN2Q9NZM3 1697 aa17.04■□□□□ 0.32
NELFE-213ENST00000494956 HECW2Q9P2P5 1572 aa17.03■□□□□ 0.32
NELFE-213ENST00000494956 ABCC1P33527 1531 aa17.03■□□□□ 0.32
NELFE-213ENST00000494956 MLECQ14165 292 aa17.03■□□□□ 0.32
NELFE-213ENST00000494956 ZNF777Q9ULD5 760 aaPredicted RBP17.03■□□□□ 0.32
NELFE-213ENST00000494956 PTPRMP28827 1452 aa17.03■□□□□ 0.32
NELFE-213ENST00000494956 RIMS1Q86UR5 1692 aaKnown RBP17.03■□□□□ 0.32
NELFE-213ENST00000494956 KDM5CP41229 1560 aa17.02■□□□□ 0.32
NELFE-213ENST00000494956 GPATCH8Q9UKJ3 1502 aaKnown RBP17.02■□□□□ 0.32
NELFE-213ENST00000494956 ZNF518AQ6AHZ1 1483 aa17.02■□□□□ 0.32
NELFE-213ENST00000494956 MAGI2Q86UL8 1455 aa17.02■□□□□ 0.32
NELFE-213ENST00000494956 SAMD9LQ8IVG5 1584 aa17.02■□□□□ 0.31
NELFE-213ENST00000494956 MTUS2Q5JR59 1369 aa17.02■□□□□ 0.31
NELFE-213ENST00000494956 MYT1LQ9UL68 1186 aa17■□□□□ 0.31
NELFE-213ENST00000494956 ATP10AO60312 1499 aa16.99■□□□□ 0.31
NELFE-213ENST00000494956 ABCA6Q8N139 1617 aa16.98■□□□□ 0.31
NELFE-213ENST00000494956 DIP2CQ9Y2E4 1556 aa16.98■□□□□ 0.31
NELFE-213ENST00000494956 C9orf84Q5VXU9 1444 aa16.97■□□□□ 0.31
NELFE-213ENST00000494956 EHBP1L1Q8N3D4 1523 aa16.97■□□□□ 0.31
NELFE-213ENST00000494956 SYCP2Q9BX26 1530 aa16.97■□□□□ 0.31
NELFE-213ENST00000494956 CCNB3Q8WWL7 1395 aa16.97■□□□□ 0.31
NELFE-213ENST00000494956 TIAM1Q13009 1591 aa16.97■□□□□ 0.31
NELFE-213ENST00000494956 HNRNPMP52272 730 aaKnown RBP eCLIP16.96■□□□□ 0.31
NELFE-213ENST00000494956 KIDINS220Q9ULH0 1771 aa16.96■□□□□ 0.31
NELFE-213ENST00000494956 FER1L4A9Z1Z3 1794 aa16.95■□□□□ 0.3
NELFE-213ENST00000494956 CFDP1Q9UEE9 299 aaPredicted RBP16.95■□□□□ 0.3
NELFE-213ENST00000494956 VPS8Q8N3P4 1428 aa16.94■□□□□ 0.3
NELFE-213ENST00000494956 ZNF644Q9H582 1327 aaPredicted RBP16.94■□□□□ 0.3
NELFE-213ENST00000494956 MLH3Q9UHC1 1453 aa16.93■□□□□ 0.3
NELFE-213ENST00000494956 SUPT6HQ7KZ85 1726 aaKnown RBP16.9■□□□□ 0.3
NELFE-213ENST00000494956 NCOA2Q15596 1464 aa16.89■□□□□ 0.29
NELFE-213ENST00000494956 KANK4Q5T7N3 995 aaPredicted RBP16.88■□□□□ 0.29
NELFE-213ENST00000494956 CEBPAP49715 358 aaPredicted RBP16.87■□□□□ 0.29
NELFE-213ENST00000494956 REREQ9P2R6 1566 aa16.86■□□□□ 0.29
NELFE-213ENST00000494956 SPAG9O60271 1321 aaKnown RBP16.86■□□□□ 0.29
NELFE-213ENST00000494956 KIAA1107Q9UPP5 1409 aa16.86■□□□□ 0.29
NELFE-213ENST00000494956 LRRC9Q6ZRR7 1453 aa16.86■□□□□ 0.29
NELFE-213ENST00000494956 ATP7AQ04656 1500 aa16.86■□□□□ 0.29
NELFE-213ENST00000494956 PLEKHH2Q8IVE3 1493 aa16.85■□□□□ 0.29
NELFE-213ENST00000494956 LMTK3Q96Q04 1460 aa16.85■□□□□ 0.29
NELFE-213ENST00000494956 INO80Q9ULG1 1556 aaPredicted RBP16.85■□□□□ 0.29
NELFE-213ENST00000494956 MBD5Q9P267 1494 aa16.84■□□□□ 0.29
NELFE-213ENST00000494956 AGLP35573 1532 aa16.83■□□□□ 0.28
NELFE-213ENST00000494956 HSPA2P54652 639 aa16.82■□□□□ 0.28
NELFE-213ENST00000494956 CAMSAP2Q08AD1 1489 aa16.81■□□□□ 0.28
NELFE-213ENST00000494956 C3P01024 1663 aa16.78■□□□□ 0.28
NELFE-213ENST00000494956 MAP3K1Q13233 1512 aa16.77■□□□□ 0.28
NELFE-213ENST00000494956 A2MP01023 1474 aa16.77■□□□□ 0.28
NELFE-213ENST00000494956 PLXNC1O60486 1568 aa16.77■□□□□ 0.27
NELFE-213ENST00000494956 ADGBQ8N7X0 1667 aa16.76■□□□□ 0.27
NELFE-213ENST00000494956 CCDC141Q6ZP82 1450 aa16.74■□□□□ 0.27
NELFE-213ENST00000494956 PREX1Q8TCU6 1659 aa16.74■□□□□ 0.27
NELFE-213ENST00000494956 ESF1Q9H501 851 aaKnown RBP16.73■□□□□ 0.27
NELFE-213ENST00000494956 CLTCQ00610 1675 aaKnown RBP16.72■□□□□ 0.27
NELFE-213ENST00000494956 GGT6Q6P531 493 aa16.72■□□□□ 0.27
NELFE-213ENST00000494956 MYOM3Q5VTT5 1437 aa16.71■□□□□ 0.27
NELFE-213ENST00000494956 ARHGEF5Q12774 1597 aa16.71■□□□□ 0.27
NELFE-213ENST00000494956 RTEL1-TNFRSF6BF6WH68 1400 aa16.7■□□□□ 0.26
NELFE-213ENST00000494956 APLP2Q06481 763 aa16.7■□□□□ 0.26
NELFE-213ENST00000494956 SETD1BQ9UPS6 1966 aaKnown RBP16.68■□□□□ 0.26
NELFE-213ENST00000494956 MROH2AA6NES4 1674 aa16.68■□□□□ 0.26
NELFE-213ENST00000494956 ZMYM3Q14202 1370 aa16.67■□□□□ 0.26
NELFE-213ENST00000494956 DHX29Q7Z478 1369 aaKnown RBP16.67■□□□□ 0.26
NELFE-213ENST00000494956 UHRF1BP1Q6BDS2 1440 aa16.66■□□□□ 0.26
NELFE-213ENST00000494956 ILDR1Q86SU0 546 aaPredicted RBP16.66■□□□□ 0.26
NELFE-213ENST00000494956 CNTLNQ9NXG0 1405 aa16.66■□□□□ 0.26
NELFE-213ENST00000494956 MIA2Q96PC5 1412 aa16.65■□□□□ 0.26
NELFE-213ENST00000494956 KIF3BO15066 747 aa16.65■□□□□ 0.26
NELFE-213ENST00000494956 RSPH4AQ5TD94 716 aa16.65■□□□□ 0.26
NELFE-213ENST00000494956 PTPN23Q9H3S7 1636 aa16.64■□□□□ 0.25
NELFE-213ENST00000494956 TSPY4P0CV99 314 aa16.64■□□□□ 0.25
NELFE-213ENST00000494956 TSPY10P0CW01 314 aa16.64■□□□□ 0.25
NELFE-213ENST00000494956 STRCQ7RTU9 1775 aa16.64■□□□□ 0.25
NELFE-213ENST00000494956 MAST1Q9Y2H9 1570 aa16.62■□□□□ 0.25
NELFE-213ENST00000494956 PTPRKQ15262 1439 aa16.6■□□□□ 0.25
NELFE-213ENST00000494956 FGD6Q6ZV73 1430 aa16.6■□□□□ 0.25
NELFE-213ENST00000494956 CROCC2H7BZ55 1655 aa16.59■□□□□ 0.25
NELFE-213ENST00000494956 ABCC5O15440 1437 aa16.59■□□□□ 0.25
NELFE-213ENST00000494956 NPATQ14207 1427 aa16.58■□□□□ 0.24
NELFE-213ENST00000494956 MYO3AQ8NEV4 1616 aa16.58■□□□□ 0.24
NELFE-213ENST00000494956 FBXO31Q5XUX0 539 aaPredicted RBP16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms