RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-208ENST00000494728 POGZQ7Z3K3 1410 aa19.15■□□□□ 0.66
VTI1A-208ENST00000494728 ZFYVE16Q7Z3T8 1539 aa19.15■□□□□ 0.66
VTI1A-208ENST00000494728 PREX2Q70Z35 1606 aa19.14■□□□□ 0.66
VTI1A-208ENST00000494728 RIMS1Q86UR5 1692 aaKnown RBP19.14■□□□□ 0.65
VTI1A-208ENST00000494728 CDC42BPAQ5VT25 1732 aa19.12■□□□□ 0.65
VTI1A-208ENST00000494728 PTPRMP28827 1452 aa19.12■□□□□ 0.65
VTI1A-208ENST00000494728 CCDC18Q5T9S5 1454 aa19.12■□□□□ 0.65
VTI1A-208ENST00000494728 FYCO1Q9BQS8 1478 aa19.12■□□□□ 0.65
VTI1A-208ENST00000494728 ARHGAP5Q13017 1502 aa19.1■□□□□ 0.65
VTI1A-208ENST00000494728 CLIP1P30622 1438 aa19.1■□□□□ 0.65
VTI1A-208ENST00000494728 SCAPERQ9BY12 1400 aa19.1■□□□□ 0.65
VTI1A-208ENST00000494728 KDM5CP41229 1560 aa19.08■□□□□ 0.65
VTI1A-208ENST00000494728 ITSN2Q9NZM3 1697 aa19.08■□□□□ 0.64
VTI1A-208ENST00000494728 FER1L4A9Z1Z3 1794 aa19.06■□□□□ 0.64
VTI1A-208ENST00000494728 MAGI2Q86UL8 1455 aa19.06■□□□□ 0.64
VTI1A-208ENST00000494728 ABCC1P33527 1531 aa19.05■□□□□ 0.64
VTI1A-208ENST00000494728 CDK11AQ9UQ88 783 aaPredicted RBP19.04■□□□□ 0.64
VTI1A-208ENST00000494728 ARHGEF12Q9NZN5 1544 aa19.03■□□□□ 0.64
VTI1A-208ENST00000494728 ABCA6Q8N139 1617 aa19.03■□□□□ 0.64
VTI1A-208ENST00000494728 ARID4BQ4LE39 1312 aaPredicted RBP19.02■□□□□ 0.64
VTI1A-208ENST00000494728 DIP2CQ9Y2E4 1556 aa19.02■□□□□ 0.64
VTI1A-208ENST00000494728 ZNF518AQ6AHZ1 1483 aa19.02■□□□□ 0.63
VTI1A-208ENST00000494728 EFCAB2Q5VUJ9 269 aa19.01■□□□□ 0.63
VTI1A-208ENST00000494728 SAMD9LQ8IVG5 1584 aa18.99■□□□□ 0.63
VTI1A-208ENST00000494728 SENP3Q9H4L4 574 aaPredicted RBP18.99■□□□□ 0.63
VTI1A-208ENST00000494728 C9orf84Q5VXU9 1444 aa18.98■□□□□ 0.63
VTI1A-208ENST00000494728 ATP10AO60312 1499 aa18.97■□□□□ 0.63
VTI1A-208ENST00000494728 KIDINS220Q9ULH0 1771 aa18.97■□□□□ 0.63
VTI1A-208ENST00000494728 TRAPPC8Q9Y2L5 1435 aa18.97■□□□□ 0.63
VTI1A-208ENST00000494728 LMTK3Q96Q04 1460 aa18.97■□□□□ 0.63
VTI1A-208ENST00000494728 CEP162Q5TB80 1403 aa18.95■□□□□ 0.62
VTI1A-208ENST00000494728 REREQ9P2R6 1566 aa18.94■□□□□ 0.62
VTI1A-208ENST00000494728 AFAP1Q8N556 730 aa18.94■□□□□ 0.62
VTI1A-208ENST00000494728 SYCP2Q9BX26 1530 aa18.94■□□□□ 0.62
VTI1A-208ENST00000494728 GPATCH8Q9UKJ3 1502 aaKnown RBP18.93■□□□□ 0.62
VTI1A-208ENST00000494728 MLH3Q9UHC1 1453 aa18.91■□□□□ 0.62
VTI1A-208ENST00000494728 TIAM1Q13009 1591 aa18.91■□□□□ 0.62
VTI1A-208ENST00000494728 MLECQ14165 292 aa18.91■□□□□ 0.62
VTI1A-208ENST00000494728 EHBP1L1Q8N3D4 1523 aa18.89■□□□□ 0.61
VTI1A-208ENST00000494728 INO80Q9ULG1 1556 aaPredicted RBP18.87■□□□□ 0.61
VTI1A-208ENST00000494728 PREX1Q8TCU6 1659 aa18.85■□□□□ 0.61
VTI1A-208ENST00000494728 PLPPR3Q6T4P5 718 aa18.85■□□□□ 0.61
VTI1A-208ENST00000494728 C3P01024 1663 aa18.85■□□□□ 0.61
VTI1A-208ENST00000494728 AGLP35573 1532 aa18.84■□□□□ 0.61
VTI1A-208ENST00000494728 MTUS2Q5JR59 1369 aa18.82■□□□□ 0.6
VTI1A-208ENST00000494728 ILDR1Q86SU0 546 aaPredicted RBP18.82■□□□□ 0.6
VTI1A-208ENST00000494728 ATP7AQ04656 1500 aa18.82■□□□□ 0.6
VTI1A-208ENST00000494728 SUPT6HQ7KZ85 1726 aaKnown RBP18.82■□□□□ 0.6
VTI1A-208ENST00000494728 ZNF777Q9ULD5 760 aaPredicted RBP18.81■□□□□ 0.6
VTI1A-208ENST00000494728 PLXNC1O60486 1568 aa18.81■□□□□ 0.6
VTI1A-208ENST00000494728 HSPA2P54652 639 aa18.79■□□□□ 0.6
VTI1A-208ENST00000494728 CCNB3Q8WWL7 1395 aa18.79■□□□□ 0.6
VTI1A-208ENST00000494728 MYT1LQ9UL68 1186 aa18.78■□□□□ 0.6
VTI1A-208ENST00000494728 KIAA1107Q9UPP5 1409 aa18.77■□□□□ 0.6
VTI1A-208ENST00000494728 LOC105371045A0A1W2PR82 267 aa18.77■□□□□ 0.6
VTI1A-208ENST00000494728 ADGBQ8N7X0 1667 aa18.76■□□□□ 0.59
VTI1A-208ENST00000494728 CEBPAP49715 358 aaPredicted RBP18.76■□□□□ 0.59
VTI1A-208ENST00000494728 HNRNPMP52272 730 aaKnown RBP eCLIP18.76■□□□□ 0.59
VTI1A-208ENST00000494728 PLEKHH2Q8IVE3 1493 aa18.76■□□□□ 0.59
VTI1A-208ENST00000494728 NCOA2Q15596 1464 aa18.75■□□□□ 0.59
VTI1A-208ENST00000494728 ZNF644Q9H582 1327 aaPredicted RBP18.74■□□□□ 0.59
VTI1A-208ENST00000494728 MROH2AA6NES4 1674 aa18.74■□□□□ 0.59
VTI1A-208ENST00000494728 MBD5Q9P267 1494 aa18.74■□□□□ 0.59
VTI1A-208ENST00000494728 CFDP1Q9UEE9 299 aaPredicted RBP18.74■□□□□ 0.59
VTI1A-208ENST00000494728 STRCQ7RTU9 1775 aa18.73■□□□□ 0.59
VTI1A-208ENST00000494728 VPS8Q8N3P4 1428 aa18.73■□□□□ 0.59
VTI1A-208ENST00000494728 CLTCQ00610 1675 aaKnown RBP18.73■□□□□ 0.59
VTI1A-208ENST00000494728 SETD1BQ9UPS6 1966 aaKnown RBP18.72■□□□□ 0.59
VTI1A-208ENST00000494728 SPAG9O60271 1321 aaKnown RBP18.72■□□□□ 0.59
VTI1A-208ENST00000494728 CAMSAP2Q08AD1 1489 aa18.71■□□□□ 0.59
VTI1A-208ENST00000494728 A2MP01023 1474 aa18.69■□□□□ 0.58
VTI1A-208ENST00000494728 LRRC9Q6ZRR7 1453 aa18.68■□□□□ 0.58
VTI1A-208ENST00000494728 UHRF1BP1Q6BDS2 1440 aa18.66■□□□□ 0.58
VTI1A-208ENST00000494728 CCDC141Q6ZP82 1450 aa18.65■□□□□ 0.58
VTI1A-208ENST00000494728 CNTLNQ9NXG0 1405 aa18.64■□□□□ 0.57
VTI1A-208ENST00000494728 ARHGEF5Q12774 1597 aa18.64■□□□□ 0.57
VTI1A-208ENST00000494728 MYO3AQ8NEV4 1616 aa18.63■□□□□ 0.57
VTI1A-208ENST00000494728 ZNF142P52746 1687 aaPredicted RBP18.61■□□□□ 0.57
VTI1A-208ENST00000494728 MAP3K1Q13233 1512 aa18.6■□□□□ 0.57
VTI1A-208ENST00000494728 RTEL1-TNFRSF6BF6WH68 1400 aa18.6■□□□□ 0.57
VTI1A-208ENST00000494728 KANK4Q5T7N3 995 aaPredicted RBP18.58■□□□□ 0.56
VTI1A-208ENST00000494728 PHF23Q9BUL5 403 aaPredicted RBP18.58■□□□□ 0.56
VTI1A-208ENST00000494728 NPATQ14207 1427 aa18.57■□□□□ 0.56
VTI1A-208ENST00000494728 ZMYM3Q14202 1370 aa18.56■□□□□ 0.56
VTI1A-208ENST00000494728 ESF1Q9H501 851 aaKnown RBP18.56■□□□□ 0.56
VTI1A-208ENST00000494728 MAST1Q9Y2H9 1570 aa18.55■□□□□ 0.56
VTI1A-208ENST00000494728 CROCC2H7BZ55 1655 aa18.54■□□□□ 0.56
VTI1A-208ENST00000494728 FBXO41Q8TF61 875 aa18.54■□□□□ 0.56
VTI1A-208ENST00000494728 PTPRKQ15262 1439 aa18.54■□□□□ 0.56
VTI1A-208ENST00000494728 CAMSAP1Q5T5Y3 1602 aa18.53■□□□□ 0.56
VTI1A-208ENST00000494728 CEP170BQ9Y4F5 1589 aaPredicted RBP18.53■□□□□ 0.56
VTI1A-208ENST00000494728 DHX29Q7Z478 1369 aaKnown RBP18.53■□□□□ 0.56
VTI1A-208ENST00000494728 NCOA1Q15788 1441 aa18.52■□□□□ 0.56
VTI1A-208ENST00000494728 MYOM3Q5VTT5 1437 aa18.52■□□□□ 0.56
VTI1A-208ENST00000494728 GGT6Q6P531 493 aa18.52■□□□□ 0.56
VTI1A-208ENST00000494728 RNF17Q9BXT8 1623 aaKnown RBP18.52■□□□□ 0.55
VTI1A-208ENST00000494728 KDM5DQ9BY66 1539 aa18.5■□□□□ 0.55
VTI1A-208ENST00000494728 MROH1Q8NDA8 1641 aa18.49■□□□□ 0.55
VTI1A-208ENST00000494728 PTPN23Q9H3S7 1636 aa18.48■□□□□ 0.55
VTI1A-208ENST00000494728 EIF2AK4Q9P2K8 1649 aaKnown RBP18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 118 ms