RNA–Protein interactions for RNA: ENST00000493815.5

PDLIM7-208, Transcript of PDZ and LIM domain 7, humanhuman

TSL 1 (best)

Gene PDLIM7, Length 1,686 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-208ENST00000493815 CDC42BPBQ9Y5S2 1711 aa27.8■■■□□ 2.04
PDLIM7-208ENST00000493815 ZNF777Q9ULD5 760 aaPredicted RBP27.8■■■□□ 2.04
PDLIM7-208ENST00000493815 CFDP1Q9UEE9 299 aaPredicted RBP27.79■■■□□ 2.04
PDLIM7-208ENST00000493815 COL17A1Q9UMD9 1497 aaPredicted RBP27.79■■■□□ 2.04
PDLIM7-208ENST00000493815 AKNAQ7Z591 1439 aa27.78■■■□□ 2.04
PDLIM7-208ENST00000493815 NEO1Q92859 1461 aa27.78■■■□□ 2.04
PDLIM7-208ENST00000493815 ARAP3Q8WWN8 1544 aa27.77■■■□□ 2.04
PDLIM7-208ENST00000493815 PHLDB1Q86UU1 1377 aa27.75■■■□□ 2.03
PDLIM7-208ENST00000493815 KDM6BO15054 1643 aa27.74■■■□□ 2.03
PDLIM7-208ENST00000493815 ZNF644Q9H582 1327 aaPredicted RBP27.72■■■□□ 2.03
PDLIM7-208ENST00000493815 CFAP74Q9C0B2 1584 aa27.72■■■□□ 2.03
PDLIM7-208ENST00000493815 ADGRL1O94910 1474 aa27.71■■■□□ 2.03
PDLIM7-208ENST00000493815 RAPGEF3O95398 923 aa27.71■■■□□ 2.03
PDLIM7-208ENST00000493815 ITSN2Q9NZM3 1697 aa27.7■■■□□ 2.02
PDLIM7-208ENST00000493815 MYOM3Q5VTT5 1437 aa27.69■■■□□ 2.02
PDLIM7-208ENST00000493815 SCAPERQ9BY12 1400 aa27.69■■■□□ 2.02
PDLIM7-208ENST00000493815 SAMD9LQ8IVG5 1584 aa27.67■■■□□ 2.02
PDLIM7-208ENST00000493815 ARHGEF12Q9NZN5 1544 aa27.64■■■□□ 2.02
PDLIM7-208ENST00000493815 HNRNPMP52272 730 aaKnown RBP eCLIP27.64■■■□□ 2.021e-7■■■□□ 16.6
PDLIM7-208ENST00000493815 DENND4BO75064 1496 aaPredicted RBP27.64■■■□□ 2.01
PDLIM7-208ENST00000493815 ABCC1P33527 1531 aa27.62■■■□□ 2.01
PDLIM7-208ENST00000493815 AFAP1Q8N556 730 aa27.6■■■□□ 2.01
PDLIM7-208ENST00000493815 CAMSAP2Q08AD1 1489 aa27.6■■■□□ 2.01
PDLIM7-208ENST00000493815 SYCP2Q9BX26 1530 aa27.59■■■□□ 2.01
PDLIM7-208ENST00000493815 FGD6Q6ZV73 1430 aa27.58■■■□□ 2.01
PDLIM7-208ENST00000493815 POGZQ7Z3K3 1410 aa27.58■■■□□ 2.01
PDLIM7-208ENST00000493815 MIA2Q96PC5 1412 aa27.58■■■□□ 2.01
PDLIM7-208ENST00000493815 TRAPPC8Q9Y2L5 1435 aa27.58■■■□□ 2.01
PDLIM7-208ENST00000493815 FRMPD1Q5SYB0 1578 aa27.58■■■□□ 2.01
PDLIM7-208ENST00000493815 PLEKHH2Q8IVE3 1493 aa27.55■■■□□ 2
PDLIM7-208ENST00000493815 KIAA1107Q9UPP5 1409 aa27.55■■■□□ 2
PDLIM7-208ENST00000493815 RICTORQ6R327 1708 aa27.55■■■□□ 2
PDLIM7-208ENST00000493815 ZNF518AQ6AHZ1 1483 aa27.52■■■□□ 2
PDLIM7-208ENST00000493815 MBD5Q9P267 1494 aa27.52■■■□□ 2
PDLIM7-208ENST00000493815 PTPN23Q9H3S7 1636 aa27.52■■■□□ 2
PDLIM7-208ENST00000493815 FAM50AQ14320 339 aaKnown RBP27.49■■□□□ 1.99
PDLIM7-208ENST00000493815 MYT1LQ9UL68 1186 aa27.48■■□□□ 1.99
PDLIM7-208ENST00000493815 TCOF1Q13428 1488 aaKnown RBP27.46■■□□□ 1.99
PDLIM7-208ENST00000493815 KDM5CP41229 1560 aa27.45■■□□□ 1.98
PDLIM7-208ENST00000493815 ZMYM4Q5VZL5 1548 aa27.44■■□□□ 1.98
PDLIM7-208ENST00000493815 YEATS2Q9ULM3 1422 aa27.43■■□□□ 1.98
PDLIM7-208ENST00000493815 SPAG9O60271 1321 aaKnown RBP27.42■■□□□ 1.98
PDLIM7-208ENST00000493815 CCDC141Q6ZP82 1450 aa27.41■■□□□ 1.98
PDLIM7-208ENST00000493815 ARHGEF5Q12774 1597 aa27.38■■□□□ 1.97
PDLIM7-208ENST00000493815 RSPH4AQ5TD94 716 aa27.38■■□□□ 1.97
PDLIM7-208ENST00000493815 ZFYVE16Q7Z3T8 1539 aa27.37■■□□□ 1.97
PDLIM7-208ENST00000493815 HECW2Q9P2P5 1572 aa27.37■■□□□ 1.97
PDLIM7-208ENST00000493815 MAGI2Q86UL8 1455 aa27.37■■□□□ 1.97
PDLIM7-208ENST00000493815 MLH3Q9UHC1 1453 aa27.37■■□□□ 1.97
PDLIM7-208ENST00000493815 ABCC5O15440 1437 aa27.37■■□□□ 1.97
PDLIM7-208ENST00000493815 TSPY4P0CV99 314 aa27.36■■□□□ 1.97
PDLIM7-208ENST00000493815 TSPY10P0CW01 314 aa27.36■■□□□ 1.97
PDLIM7-208ENST00000493815 RRBP1Q9P2E9 1410 aaKnown RBP27.35■■□□□ 1.97
PDLIM7-208ENST00000493815 DAPK1P53355 1430 aa27.34■■□□□ 1.97
PDLIM7-208ENST00000493815 ITGAEP38570 1179 aa27.33■■□□□ 1.97
PDLIM7-208ENST00000493815 ARHGEF40Q8TER5 1519 aa27.33■■□□□ 1.97
PDLIM7-208ENST00000493815 KIDINS220Q9ULH0 1771 aa27.33■■□□□ 1.97
PDLIM7-208ENST00000493815 ATP7AQ04656 1500 aa27.32■■□□□ 1.96
PDLIM7-208ENST00000493815 DNMT1P26358 1616 aaKnown RBP27.31■■□□□ 1.96
PDLIM7-208ENST00000493815 CHIC2Q9UKJ5 165 aa27.31■■□□□ 1.96
PDLIM7-208ENST00000493815 INO80Q9ULG1 1556 aaPredicted RBP27.3■■□□□ 1.96
PDLIM7-208ENST00000493815 C9orf84Q5VXU9 1444 aa27.3■■□□□ 1.96
PDLIM7-208ENST00000493815 ABCA6Q8N139 1617 aa27.29■■□□□ 1.96
PDLIM7-208ENST00000493815 DIP2CQ9Y2E4 1556 aa27.28■■□□□ 1.96
PDLIM7-208ENST00000493815 RTEL1-TNFRSF6BF6WH68 1400 aa27.27■■□□□ 1.96
PDLIM7-208ENST00000493815 ATP10AO60312 1499 aa27.27■■□□□ 1.96
PDLIM7-208ENST00000493815 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.26■■□□□ 1.954e-6■■■□□ 19.1
PDLIM7-208ENST00000493815 PTPRKQ15262 1439 aa27.26■■□□□ 1.95
PDLIM7-208ENST00000493815 CROCC2H7BZ55 1655 aa27.24■■□□□ 1.95
PDLIM7-208ENST00000493815 ARID4BQ4LE39 1312 aaPredicted RBP27.23■■□□□ 1.95
PDLIM7-208ENST00000493815 SHANK2Q9UPX8 1470 aa27.23■■□□□ 1.95
PDLIM7-208ENST00000493815 MAST1Q9Y2H9 1570 aa27.22■■□□□ 1.95
PDLIM7-208ENST00000493815 SIGLEC1Q9BZZ2 1709 aa27.21■■□□□ 1.95
PDLIM7-208ENST00000493815 RRP7BPQ9NSQ0 103 aa27.21■■□□□ 1.95
PDLIM7-208ENST00000493815 A2MP01023 1474 aa27.17■■□□□ 1.94
PDLIM7-208ENST00000493815 ANKRD30AQ9BXX3 1397 aa27.15■■□□□ 1.94
PDLIM7-208ENST00000493815 KIF15Q9NS87 1388 aa27.15■■□□□ 1.94
PDLIM7-208ENST00000493815 ADGBQ8N7X0 1667 aa27.15■■□□□ 1.94
PDLIM7-208ENST00000493815 MLECQ14165 292 aa27.14■■□□□ 1.94
PDLIM7-208ENST00000493815 NCOA1Q15788 1441 aa27.14■■□□□ 1.94
PDLIM7-208ENST00000493815 PLXNC1O60486 1568 aa27.13■■□□□ 1.93
PDLIM7-208ENST00000493815 DHX29Q7Z478 1369 aaKnown RBP27.13■■□□□ 1.93
PDLIM7-208ENST00000493815 REREQ9P2R6 1566 aa27.11■■□□□ 1.93
PDLIM7-208ENST00000493815 ADGRL2O95490 1459 aa27.11■■□□□ 1.93
PDLIM7-208ENST00000493815 KIF3BO15066 747 aa27.06■■□□□ 1.92
PDLIM7-208ENST00000493815 ROCK1Q13464 1354 aa27.05■■□□□ 1.92
PDLIM7-208ENST00000493815 AGLP35573 1532 aa27.05■■□□□ 1.92
PDLIM7-208ENST00000493815 DUOX2Q9NRD8 1548 aa27.05■■□□□ 1.92
PDLIM7-208ENST00000493815 KDM4FA0A1W2PPD8 638 aa27.04■■□□□ 1.92
PDLIM7-208ENST00000493815 GGT6Q6P531 493 aa27.03■■□□□ 1.92
PDLIM7-208ENST00000493815 BCORL1Q5H9F3 1711 aa27.01■■□□□ 1.91
PDLIM7-208ENST00000493815 ERBINQ96RT1 1412 aa26.98■■□□□ 1.91
PDLIM7-208ENST00000493815 ANKRD50Q9ULJ7 1429 aa26.98■■□□□ 1.91
PDLIM7-208ENST00000493815 ADAMTSL3P82987 1691 aa26.94■■□□□ 1.9
PDLIM7-208ENST00000493815 NAIPQ13075 1403 aa26.93■■□□□ 1.9
PDLIM7-208ENST00000493815 MADDQ8WXG6 1647 aa26.92■■□□□ 1.9
PDLIM7-208ENST00000493815 EIF2AK4Q9P2K8 1649 aaKnown RBP26.92■■□□□ 1.9
PDLIM7-208ENST00000493815 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.92■■□□□ 1.9
PDLIM7-208ENST00000493815 HFM1A2PYH4 1435 aa26.9■■□□□ 1.9
PDLIM7-208ENST00000493815 PLPPR3Q6T4P5 718 aa26.89■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms