RNA–Protein interactions for RNA: ENST00000493618.5

ATG4B-223, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 5

Gene ATG4B, Length 899 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-223ENST00000493618 MADDQ8WXG6 1647 aa23.86■■□□□ 1.41
ATG4B-223ENST00000493618 CLIP1P30622 1438 aa23.85■■□□□ 1.41
ATG4B-223ENST00000493618 SCAPERQ9BY12 1400 aa23.85■■□□□ 1.41
ATG4B-223ENST00000493618 ZFYVE16Q7Z3T8 1539 aa23.85■■□□□ 1.41
ATG4B-223ENST00000493618 CDC42BPBQ9Y5S2 1711 aa23.85■■□□□ 1.41
ATG4B-223ENST00000493618 CCDC18Q5T9S5 1454 aa23.84■■□□□ 1.41
ATG4B-223ENST00000493618 ARHGAP5Q13017 1502 aa23.84■■□□□ 1.41
ATG4B-223ENST00000493618 YEATS2Q9ULM3 1422 aa23.83■■□□□ 1.4
ATG4B-223ENST00000493618 POGZQ7Z3K3 1410 aa23.82■■□□□ 1.4
ATG4B-223ENST00000493618 RIMS1Q86UR5 1692 aaKnown RBP23.82■■□□□ 1.4
ATG4B-223ENST00000493618 PTPRMP28827 1452 aa23.81■■□□□ 1.4
ATG4B-223ENST00000493618 EFCAB2Q5VUJ9 269 aa23.8■■□□□ 1.4
ATG4B-223ENST00000493618 FYCO1Q9BQS8 1478 aa23.8■■□□□ 1.4
ATG4B-223ENST00000493618 PREX2Q70Z35 1606 aa23.78■■□□□ 1.4
ATG4B-223ENST00000493618 CDC42BPAQ5VT25 1732 aa23.78■■□□□ 1.4
ATG4B-223ENST00000493618 MAGI2Q86UL8 1455 aa23.75■■□□□ 1.39
ATG4B-223ENST00000493618 ITSN2Q9NZM3 1697 aa23.72■■□□□ 1.39
ATG4B-223ENST00000493618 FER1L4A9Z1Z3 1794 aa23.72■■□□□ 1.39
ATG4B-223ENST00000493618 ZNF518AQ6AHZ1 1483 aa23.69■■□□□ 1.38
ATG4B-223ENST00000493618 MLECQ14165 292 aa23.69■■□□□ 1.38
ATG4B-223ENST00000493618 KDM5CP41229 1560 aa23.69■■□□□ 1.38
ATG4B-223ENST00000493618 PLPPR3Q6T4P5 718 aa23.68■■□□□ 1.38
ATG4B-223ENST00000493618 AFAP1Q8N556 730 aa23.68■■□□□ 1.38
ATG4B-223ENST00000493618 ABCC1P33527 1531 aa23.68■■□□□ 1.38
ATG4B-223ENST00000493618 ATP10AO60312 1499 aa23.68■■□□□ 1.38
ATG4B-223ENST00000493618 C9orf84Q5VXU9 1444 aa23.66■■□□□ 1.38
ATG4B-223ENST00000493618 ARHGEF12Q9NZN5 1544 aa23.65■■□□□ 1.38
ATG4B-223ENST00000493618 MYT1LQ9UL68 1186 aa23.65■■□□□ 1.38
ATG4B-223ENST00000493618 ABCA6Q8N139 1617 aa23.64■■□□□ 1.38
ATG4B-223ENST00000493618 CEP162Q5TB80 1403 aa23.63■■□□□ 1.37
ATG4B-223ENST00000493618 DIP2CQ9Y2E4 1556 aa23.63■■□□□ 1.37
ATG4B-223ENST00000493618 TRAPPC8Q9Y2L5 1435 aa23.62■■□□□ 1.37
ATG4B-223ENST00000493618 SAMD9LQ8IVG5 1584 aa23.61■■□□□ 1.37
ATG4B-223ENST00000493618 ZNF777Q9ULD5 760 aaPredicted RBP23.59■■□□□ 1.37
ATG4B-223ENST00000493618 KIDINS220Q9ULH0 1771 aa23.58■■□□□ 1.37
ATG4B-223ENST00000493618 GPATCH8Q9UKJ3 1502 aaKnown RBP23.58■■□□□ 1.36
ATG4B-223ENST00000493618 LMTK3Q96Q04 1460 aa23.56■■□□□ 1.36
ATG4B-223ENST00000493618 SYCP2Q9BX26 1530 aa23.56■■□□□ 1.36
ATG4B-223ENST00000493618 MLH3Q9UHC1 1453 aa23.56■■□□□ 1.36
ATG4B-223ENST00000493618 MTUS2Q5JR59 1369 aa23.55■■□□□ 1.36
ATG4B-223ENST00000493618 REREQ9P2R6 1566 aa23.52■■□□□ 1.36
ATG4B-223ENST00000493618 EHBP1L1Q8N3D4 1523 aa23.51■■□□□ 1.35
ATG4B-223ENST00000493618 LOC105371045A0A1W2PR82 267 aa23.51■■□□□ 1.35
ATG4B-223ENST00000493618 CCNB3Q8WWL7 1395 aa23.51■■□□□ 1.35
ATG4B-223ENST00000493618 TIAM1Q13009 1591 aa23.5■■□□□ 1.35
ATG4B-223ENST00000493618 HNRNPMP52272 730 aaKnown RBP eCLIP23.49■■□□□ 1.354e-7■■■■□ 21.8
ATG4B-223ENST00000493618 CFDP1Q9UEE9 299 aaPredicted RBP23.47■■□□□ 1.35
ATG4B-223ENST00000493618 SUPT6HQ7KZ85 1726 aaKnown RBP23.47■■□□□ 1.35
ATG4B-223ENST00000493618 CEBPAP49715 358 aaPredicted RBP23.46■■□□□ 1.35
ATG4B-223ENST00000493618 HSPA2P54652 639 aa23.46■■□□□ 1.35
ATG4B-223ENST00000493618 PREX1Q8TCU6 1659 aa23.45■■□□□ 1.34
ATG4B-223ENST00000493618 C3P01024 1663 aa23.44■■□□□ 1.34
ATG4B-223ENST00000493618 AGLP35573 1532 aa23.43■■□□□ 1.34
ATG4B-223ENST00000493618 INO80Q9ULG1 1556 aaPredicted RBP23.43■■□□□ 1.34
ATG4B-223ENST00000493618 SPAG9O60271 1321 aaKnown RBP23.42■■□□□ 1.34
ATG4B-223ENST00000493618 ATP7AQ04656 1500 aa23.42■■□□□ 1.34
ATG4B-223ENST00000493618 PLEKHH2Q8IVE3 1493 aa23.42■■□□□ 1.34
ATG4B-223ENST00000493618 ZNF644Q9H582 1327 aaPredicted RBP23.4■■□□□ 1.34
ATG4B-223ENST00000493618 KIAA1107Q9UPP5 1409 aa23.4■■□□□ 1.34
ATG4B-223ENST00000493618 NCOA2Q15596 1464 aa23.36■■□□□ 1.33
ATG4B-223ENST00000493618 ADGBQ8N7X0 1667 aa23.35■■□□□ 1.33
ATG4B-223ENST00000493618 VPS8Q8N3P4 1428 aa23.34■■□□□ 1.33
ATG4B-223ENST00000493618 ESF1Q9H501 851 aaKnown RBP23.34■■□□□ 1.33
ATG4B-223ENST00000493618 SETD1BQ9UPS6 1966 aaKnown RBP23.32■■□□□ 1.32
ATG4B-223ENST00000493618 CLTCQ00610 1675 aaKnown RBP23.32■■□□□ 1.32
ATG4B-223ENST00000493618 PLXNC1O60486 1568 aa23.32■■□□□ 1.32
ATG4B-223ENST00000493618 A2MP01023 1474 aa23.31■■□□□ 1.32
ATG4B-223ENST00000493618 MBD5Q9P267 1494 aa23.31■■□□□ 1.32
ATG4B-223ENST00000493618 MROH2AA6NES4 1674 aa23.3■■□□□ 1.32
ATG4B-223ENST00000493618 CAMSAP2Q08AD1 1489 aa23.3■■□□□ 1.32
ATG4B-223ENST00000493618 STRCQ7RTU9 1775 aa23.28■■□□□ 1.32
ATG4B-223ENST00000493618 UHRF1BP1Q6BDS2 1440 aa23.27■■□□□ 1.32
ATG4B-223ENST00000493618 LRRC9Q6ZRR7 1453 aa23.27■■□□□ 1.32
ATG4B-223ENST00000493618 FBXO41Q8TF61 875 aa23.26■■□□□ 1.31
ATG4B-223ENST00000493618 CNTLNQ9NXG0 1405 aa23.25■■□□□ 1.31
ATG4B-223ENST00000493618 CCDC141Q6ZP82 1450 aa23.23■■□□□ 1.31
ATG4B-223ENST00000493618 KANK4Q5T7N3 995 aaPredicted RBP23.21■■□□□ 1.31
ATG4B-223ENST00000493618 GGT6Q6P531 493 aa23.21■■□□□ 1.31
ATG4B-223ENST00000493618 RTEL1-TNFRSF6BF6WH68 1400 aa23.2■■□□□ 1.3
ATG4B-223ENST00000493618 ZMYM3Q14202 1370 aa23.19■■□□□ 1.3
ATG4B-223ENST00000493618 ARHGEF5Q12774 1597 aa23.18■■□□□ 1.3
ATG4B-223ENST00000493618 MAP3K1Q13233 1512 aa23.18■■□□□ 1.3
ATG4B-223ENST00000493618 MYO3AQ8NEV4 1616 aa23.14■■□□□ 1.29
ATG4B-223ENST00000493618 DHX29Q7Z478 1369 aaKnown RBP23.14■■□□□ 1.29
ATG4B-223ENST00000493618 NPATQ14207 1427 aa23.13■■□□□ 1.29
ATG4B-223ENST00000493618 RSPH4AQ5TD94 716 aa23.1■■□□□ 1.29
ATG4B-223ENST00000493618 ZNF142P52746 1687 aaPredicted RBP23.09■■□□□ 1.29
ATG4B-223ENST00000493618 PTPRKQ15262 1439 aa23.09■■□□□ 1.29
ATG4B-223ENST00000493618 MYOM3Q5VTT5 1437 aa23.09■■□□□ 1.29
ATG4B-223ENST00000493618 CAMSAP1Q5T5Y3 1602 aa23.09■■□□□ 1.29
ATG4B-223ENST00000493618 KIF3BO15066 747 aa23.09■■□□□ 1.29
ATG4B-223ENST00000493618 MAST1Q9Y2H9 1570 aa23.07■■□□□ 1.28
ATG4B-223ENST00000493618 TSPY4P0CV99 314 aa23.07■■□□□ 1.28
ATG4B-223ENST00000493618 TSPY10P0CW01 314 aa23.07■■□□□ 1.28
ATG4B-223ENST00000493618 CERKQ8TCT0 537 aa23.06■■□□□ 1.28
ATG4B-223ENST00000493618 DMRT2Q9Y5R5 561 aa23.06■■□□□ 1.28
ATG4B-223ENST00000493618 NCOA1Q15788 1441 aa23.05■■□□□ 1.28
ATG4B-223ENST00000493618 CEP170BQ9Y4F5 1589 aaPredicted RBP23.05■■□□□ 1.28
ATG4B-223ENST00000493618 KDM5DQ9BY66 1539 aa23.04■■□□□ 1.28
ATG4B-223ENST00000493618 APLP2Q06481 763 aa23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 101.8 ms