RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 TEX14Q8IWB6 1497 aa17.49■□□□□ 0.39
COL6A3-214ENST00000493608 CFAP43Q8NDM7 1665 aa17.48■□□□□ 0.39
COL6A3-214ENST00000493608 ATP1B4Q9UN42 357 aaPredicted RBP17.47■□□□□ 0.39
COL6A3-214ENST00000493608 ARHGAP35Q9NRY4 1499 aa17.44■□□□□ 0.38
COL6A3-214ENST00000493608 MAGI3Q5TCQ9 1506 aa17.43■□□□□ 0.38
COL6A3-214ENST00000493608 PLEKHD1A6NEE1 506 aa17.43■□□□□ 0.38
COL6A3-214ENST00000493608 RBM42Q9BTD8 480 aaKnown RBP17.4■□□□□ 0.38
COL6A3-214ENST00000493608 ABCA9Q8IUA7 1624 aa17.39■□□□□ 0.38
COL6A3-214ENST00000493608 KDM4FA0A1W2PPD8 638 aa17.39■□□□□ 0.37
COL6A3-214ENST00000493608 CDK13Q14004 1512 aaKnown RBP17.38■□□□□ 0.37
COL6A3-214ENST00000493608 ZBTB12Q9Y330 459 aaPredicted RBP17.38■□□□□ 0.37
COL6A3-214ENST00000493608 FMN1Q68DA7 1419 aa17.37■□□□□ 0.37
COL6A3-214ENST00000493608 HECW1Q76N89 1606 aa17.32■□□□□ 0.36
COL6A3-214ENST00000493608 RAPGEF3O95398 923 aa17.31■□□□□ 0.36
COL6A3-214ENST00000493608 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.3■□□□□ 0.36
COL6A3-214ENST00000493608 ARAP3Q8WWN8 1544 aa17.29■□□□□ 0.36
COL6A3-214ENST00000493608 LRRIQ1Q96JM4 1722 aa17.29■□□□□ 0.36
COL6A3-214ENST00000493608 TTC37Q6PGP7 1564 aa17.28■□□□□ 0.36
COL6A3-214ENST00000493608 NEO1Q92859 1461 aa17.26■□□□□ 0.35
COL6A3-214ENST00000493608 CDK11AQ9UQ88 783 aaPredicted RBP17.26■□□□□ 0.35
COL6A3-214ENST00000493608 CLIP1P30622 1438 aa17.26■□□□□ 0.35
COL6A3-214ENST00000493608 PHLDB1Q86UU1 1377 aa17.26■□□□□ 0.35
COL6A3-214ENST00000493608 ADGRL1O94910 1474 aa17.25■□□□□ 0.35
COL6A3-214ENST00000493608 PCF11O94913 1555 aaKnown RBP17.23■□□□□ 0.35
COL6A3-214ENST00000493608 AKNAQ7Z591 1439 aa17.22■□□□□ 0.35
COL6A3-214ENST00000493608 FANCAO15360 1455 aa17.22■□□□□ 0.35
COL6A3-214ENST00000493608 CASKIN1Q8WXD9 1431 aa17.21■□□□□ 0.35
COL6A3-214ENST00000493608 KIF14Q15058 1648 aa17.21■□□□□ 0.35
COL6A3-214ENST00000493608 LOC105371045A0A1W2PR82 267 aa17.2■□□□□ 0.34
COL6A3-214ENST00000493608 TROQ12816 1431 aaPredicted RBP17.19■□□□□ 0.34
COL6A3-214ENST00000493608 FRMPD1Q5SYB0 1578 aa17.19■□□□□ 0.34
COL6A3-214ENST00000493608 PLCH2O75038 1416 aa17.18■□□□□ 0.34
COL6A3-214ENST00000493608 DENND4BO75064 1496 aaPredicted RBP17.18■□□□□ 0.34
COL6A3-214ENST00000493608 CFAP74Q9C0B2 1584 aa17.17■□□□□ 0.34
COL6A3-214ENST00000493608 MYO5CQ9NQX4 1742 aa17.16■□□□□ 0.34
COL6A3-214ENST00000493608 POTEHQ6S545 545 aa17.16■□□□□ 0.34
COL6A3-214ENST00000493608 RICTORQ6R327 1708 aa17.16■□□□□ 0.34
COL6A3-214ENST00000493608 EFCAB2Q5VUJ9 269 aa17.15■□□□□ 0.34
COL6A3-214ENST00000493608 CCDC18Q5T9S5 1454 aa17.14■□□□□ 0.33
COL6A3-214ENST00000493608 FYCO1Q9BQS8 1478 aa17.14■□□□□ 0.33
COL6A3-214ENST00000493608 SCAPERQ9BY12 1400 aa17.13■□□□□ 0.33
COL6A3-214ENST00000493608 CEP162Q5TB80 1403 aa17.13■□□□□ 0.33
COL6A3-214ENST00000493608 ARID4BQ4LE39 1312 aaPredicted RBP17.12■□□□□ 0.33
COL6A3-214ENST00000493608 ARHGAP5Q13017 1502 aa17.11■□□□□ 0.33
COL6A3-214ENST00000493608 CDC42BPBQ9Y5S2 1711 aa17.1■□□□□ 0.33
COL6A3-214ENST00000493608 AKT1S1Q96B36 256 aa17.09■□□□□ 0.33
COL6A3-214ENST00000493608 YEATS2Q9ULM3 1422 aa17.07■□□□□ 0.32
COL6A3-214ENST00000493608 AFAP1Q8N556 730 aa17.06■□□□□ 0.32
COL6A3-214ENST00000493608 POGZQ7Z3K3 1410 aa17.05■□□□□ 0.32
COL6A3-214ENST00000493608 MKRN4PQ13434 485 aaPredicted RBP17.05■□□□□ 0.32
COL6A3-214ENST00000493608 ARHGEF40Q8TER5 1519 aa17.05■□□□□ 0.32
COL6A3-214ENST00000493608 CDC42BPAQ5VT25 1732 aa17.04■□□□□ 0.32
COL6A3-214ENST00000493608 MYT1LQ9UL68 1186 aa17.04■□□□□ 0.32
COL6A3-214ENST00000493608 ZNF777Q9ULD5 760 aaPredicted RBP17.04■□□□□ 0.32
COL6A3-214ENST00000493608 ZMYM4Q5VZL5 1548 aa17.04■□□□□ 0.32
COL6A3-214ENST00000493608 ZFYVE16Q7Z3T8 1539 aa17.04■□□□□ 0.32
COL6A3-214ENST00000493608 PREX2Q70Z35 1606 aa17.03■□□□□ 0.32
COL6A3-214ENST00000493608 BCORL1Q5H9F3 1711 aa17.02■□□□□ 0.32
COL6A3-214ENST00000493608 ADAMTSL3P82987 1691 aa17.02■□□□□ 0.32
COL6A3-214ENST00000493608 MTUS2Q5JR59 1369 aa17.02■□□□□ 0.31
COL6A3-214ENST00000493608 SIGLEC1Q9BZZ2 1709 aa17.01■□□□□ 0.31
COL6A3-214ENST00000493608 MLECQ14165 292 aa17.01■□□□□ 0.31
COL6A3-214ENST00000493608 MAGI2Q86UL8 1455 aa17■□□□□ 0.31
COL6A3-214ENST00000493608 ARHGEF12Q9NZN5 1544 aa16.99■□□□□ 0.31
COL6A3-214ENST00000493608 ZNF518AQ6AHZ1 1483 aa16.99■□□□□ 0.31
COL6A3-214ENST00000493608 TRAPPC8Q9Y2L5 1435 aa16.98■□□□□ 0.31
COL6A3-214ENST00000493608 GPATCH8Q9UKJ3 1502 aaKnown RBP16.98■□□□□ 0.31
COL6A3-214ENST00000493608 MADDQ8WXG6 1647 aa16.98■□□□□ 0.31
COL6A3-214ENST00000493608 CCNB3Q8WWL7 1395 aa16.97■□□□□ 0.31
COL6A3-214ENST00000493608 ATP10AO60312 1499 aa16.97■□□□□ 0.31
COL6A3-214ENST00000493608 PTPRMP28827 1452 aa16.97■□□□□ 0.31
COL6A3-214ENST00000493608 HNRNPMP52272 730 aaKnown RBP eCLIP16.96■□□□□ 0.31
COL6A3-214ENST00000493608 CHRDL2Q6WN34 429 aa16.96■□□□□ 0.31
COL6A3-214ENST00000493608 CFDP1Q9UEE9 299 aaPredicted RBP16.96■□□□□ 0.31
COL6A3-214ENST00000493608 ITSN2Q9NZM3 1697 aa16.96■□□□□ 0.31
COL6A3-214ENST00000493608 ABCC1P33527 1531 aa16.96■□□□□ 0.3
COL6A3-214ENST00000493608 RIMS1Q86UR5 1692 aaKnown RBP16.95■□□□□ 0.3
COL6A3-214ENST00000493608 KDM5CP41229 1560 aa16.94■□□□□ 0.3
COL6A3-214ENST00000493608 REM2Q8IYK8 340 aaPredicted RBP16.94■□□□□ 0.3
COL6A3-214ENST00000493608 SAMD9LQ8IVG5 1584 aa16.94■□□□□ 0.3
COL6A3-214ENST00000493608 HECW2Q9P2P5 1572 aa16.94■□□□□ 0.3
COL6A3-214ENST00000493608 C9orf84Q5VXU9 1444 aa16.92■□□□□ 0.3
COL6A3-214ENST00000493608 EHBP1L1Q8N3D4 1523 aa16.91■□□□□ 0.3
COL6A3-214ENST00000493608 VPS8Q8N3P4 1428 aa16.91■□□□□ 0.3
COL6A3-214ENST00000493608 ZNF644Q9H582 1327 aaPredicted RBP16.91■□□□□ 0.3
COL6A3-214ENST00000493608 SYCP2Q9BX26 1530 aa16.91■□□□□ 0.3
COL6A3-214ENST00000493608 SPDYE2BA6NHP3 402 aa16.9■□□□□ 0.3
COL6A3-214ENST00000493608 SPDYE6P0CI01 402 aa16.9■□□□□ 0.3
COL6A3-214ENST00000493608 SPDYE2Q495Y8 402 aa16.9■□□□□ 0.3
COL6A3-214ENST00000493608 DIP2CQ9Y2E4 1556 aa16.89■□□□□ 0.3
COL6A3-214ENST00000493608 ABCA6Q8N139 1617 aa16.89■□□□□ 0.29
COL6A3-214ENST00000493608 MLH3Q9UHC1 1453 aa16.89■□□□□ 0.29
COL6A3-214ENST00000493608 TIAM1Q13009 1591 aa16.89■□□□□ 0.29
COL6A3-214ENST00000493608 KIDINS220Q9ULH0 1771 aa16.88■□□□□ 0.29
COL6A3-214ENST00000493608 FER1L4A9Z1Z3 1794 aa16.87■□□□□ 0.29
COL6A3-214ENST00000493608 SPAG9O60271 1321 aaKnown RBP16.87■□□□□ 0.29
COL6A3-214ENST00000493608 KANK4Q5T7N3 995 aaPredicted RBP16.86■□□□□ 0.29
COL6A3-214ENST00000493608 SUPT6HQ7KZ85 1726 aaKnown RBP16.85■□□□□ 0.29
COL6A3-214ENST00000493608 NCOA2Q15596 1464 aa16.85■□□□□ 0.29
COL6A3-214ENST00000493608 CEBPAP49715 358 aaPredicted RBP16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms