RNA–Protein interactions for RNA: ENST00000491802.1

CPNE9-204, Transcript of copine family member 9, humanhuman

TSL 4

Gene CPNE9, Length 584 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE9-204ENST00000491802 CDC42BPAQ5VT25 1732 aa36.83■■■■□ 3.49
CPNE9-204ENST00000491802 ADGRL1O94910 1474 aa36.82■■■■□ 3.49
CPNE9-204ENST00000491802 ARHGAP5Q13017 1502 aa36.81■■■■□ 3.48
CPNE9-204ENST00000491802 RAPGEF3O95398 923 aa36.8■■■■□ 3.48
CPNE9-204ENST00000491802 ZMYM4Q5VZL5 1548 aa36.79■■■■□ 3.48
CPNE9-204ENST00000491802 SCAPERQ9BY12 1400 aa36.75■■■■□ 3.47
CPNE9-204ENST00000491802 MAP3K1Q13233 1512 aa36.75■■■■□ 3.47
CPNE9-204ENST00000491802 POGZQ7Z3K3 1410 aa36.74■■■■□ 3.47
CPNE9-204ENST00000491802 GPATCH8Q9UKJ3 1502 aaKnown RBP36.71■■■■□ 3.47
CPNE9-204ENST00000491802 MAGI2Q86UL8 1455 aa36.69■■■■□ 3.46
CPNE9-204ENST00000491802 ARHGEF40Q8TER5 1519 aa36.68■■■■□ 3.46
CPNE9-204ENST00000491802 LRRC9Q6ZRR7 1453 aa36.67■■■■□ 3.46
CPNE9-204ENST00000491802 ABCC1P33527 1531 aa36.66■■■■□ 3.46
CPNE9-204ENST00000491802 SUPT6HQ7KZ85 1726 aaKnown RBP36.65■■■■□ 3.46
CPNE9-204ENST00000491802 CCNB3Q8WWL7 1395 aa36.65■■■■□ 3.46
CPNE9-204ENST00000491802 ZNF518AQ6AHZ1 1483 aa36.63■■■■□ 3.45
CPNE9-204ENST00000491802 KDM5CP41229 1560 aa36.63■■■■□ 3.45
CPNE9-204ENST00000491802 KDM4FA0A1W2PPD8 638 aa36.63■■■■□ 3.45
CPNE9-204ENST00000491802 ITSN2Q9NZM3 1697 aa36.61■■■■□ 3.45
CPNE9-204ENST00000491802 NCOA2Q15596 1464 aa36.61■■■■□ 3.45
CPNE9-204ENST00000491802 ZFYVE16Q7Z3T8 1539 aa36.59■■■■□ 3.45
CPNE9-204ENST00000491802 SAMD9LQ8IVG5 1584 aa36.58■■■■□ 3.45
CPNE9-204ENST00000491802 APLP2Q06481 763 aa36.57■■■■□ 3.44
CPNE9-204ENST00000491802 AEBP2Q6ZN18 517 aaPredicted RBP36.56■■■■□ 3.44
CPNE9-204ENST00000491802 ARHGEF12Q9NZN5 1544 aa36.55■■■■□ 3.44
CPNE9-204ENST00000491802 KANK4Q5T7N3 995 aaPredicted RBP36.55■■■■□ 3.44
CPNE9-204ENST00000491802 PLEKHH2Q8IVE3 1493 aa36.53■■■■□ 3.44
CPNE9-204ENST00000491802 KIAA1107Q9UPP5 1409 aa36.51■■■■□ 3.44
CPNE9-204ENST00000491802 CFDP1Q9UEE9 299 aaPredicted RBP36.51■■■■□ 3.44
CPNE9-204ENST00000491802 ZNF777Q9ULD5 760 aaPredicted RBP36.5■■■■□ 3.43
CPNE9-204ENST00000491802 YEATS2Q9ULM3 1422 aa36.5■■■■□ 3.43
CPNE9-204ENST00000491802 HECW2Q9P2P5 1572 aa36.49■■■■□ 3.43
CPNE9-204ENST00000491802 MLH3Q9UHC1 1453 aa36.48■■■■□ 3.43
CPNE9-204ENST00000491802 TRAPPC8Q9Y2L5 1435 aa36.47■■■■□ 3.43
CPNE9-204ENST00000491802 SYCP2Q9BX26 1530 aa36.45■■■■□ 3.43
CPNE9-204ENST00000491802 AFAP1Q8N556 730 aa36.45■■■■□ 3.43
CPNE9-204ENST00000491802 BCORL1Q5H9F3 1711 aa36.41■■■■□ 3.42
CPNE9-204ENST00000491802 ATP10AO60312 1499 aa36.41■■■■□ 3.42
CPNE9-204ENST00000491802 ADAMTSL3P82987 1691 aa36.41■■■■□ 3.42
CPNE9-204ENST00000491802 REREQ9P2R6 1566 aa36.38■■■■□ 3.41
CPNE9-204ENST00000491802 SIGLEC1Q9BZZ2 1709 aa36.37■■■■□ 3.41
CPNE9-204ENST00000491802 C9orf84Q5VXU9 1444 aa36.37■■■■□ 3.41
CPNE9-204ENST00000491802 DIP2CQ9Y2E4 1556 aa36.36■■■■□ 3.41
CPNE9-204ENST00000491802 KIDINS220Q9ULH0 1771 aa36.36■■■■□ 3.41
CPNE9-204ENST00000491802 ABCA6Q8N139 1617 aa36.34■■■■□ 3.41
CPNE9-204ENST00000491802 ZNF644Q9H582 1327 aaPredicted RBP36.34■■■■□ 3.41
CPNE9-204ENST00000491802 MBD5Q9P267 1494 aa36.32■■■■□ 3.41
CPNE9-204ENST00000491802 CAMSAP2Q08AD1 1489 aa36.31■■■■□ 3.4
CPNE9-204ENST00000491802 HNRNPMP52272 730 aaKnown RBP eCLIP36.31■■■■□ 3.4
CPNE9-204ENST00000491802 MYOM3Q5VTT5 1437 aa36.3■■■■□ 3.4
CPNE9-204ENST00000491802 INO80Q9ULG1 1556 aaPredicted RBP36.28■■■■□ 3.4
CPNE9-204ENST00000491802 ARID4BQ4LE39 1312 aaPredicted RBP36.27■■■■□ 3.4
CPNE9-204ENST00000491802 MYT1LQ9UL68 1186 aa36.26■■■■□ 3.4
CPNE9-204ENST00000491802 MIA2Q96PC5 1412 aa36.25■■■■□ 3.39
CPNE9-204ENST00000491802 ATP7AQ04656 1500 aa36.24■■■■□ 3.39
CPNE9-204ENST00000491802 SPAG9O60271 1321 aaKnown RBP36.23■■■■□ 3.39
CPNE9-204ENST00000491802 AGLP35573 1532 aa36.22■■■■□ 3.39
CPNE9-204ENST00000491802 ARHGEF5Q12774 1597 aa36.22■■■■□ 3.39
CPNE9-204ENST00000491802 MADDQ8WXG6 1647 aa36.22■■■■□ 3.39
CPNE9-204ENST00000491802 RSPH4AQ5TD94 716 aa36.2■■■■□ 3.39
CPNE9-204ENST00000491802 CCDC141Q6ZP82 1450 aa36.18■■■■□ 3.38
CPNE9-204ENST00000491802 RTEL1-TNFRSF6BF6WH68 1400 aa36.17■■■■□ 3.38
CPNE9-204ENST00000491802 PTPRMP28827 1452 aa36.14■■■■□ 3.38
CPNE9-204ENST00000491802 ADGBQ8N7X0 1667 aa36.12■■■■□ 3.37
CPNE9-204ENST00000491802 FGD6Q6ZV73 1430 aa36.11■■■■□ 3.37
CPNE9-204ENST00000491802 FER1L4A9Z1Z3 1794 aa36.11■■■■□ 3.37
CPNE9-204ENST00000491802 PLXNC1O60486 1568 aa36.1■■■■□ 3.37
CPNE9-204ENST00000491802 PTPN23Q9H3S7 1636 aa36.1■■■■□ 3.37
CPNE9-204ENST00000491802 RIMS1Q86UR5 1692 aaKnown RBP36.1■■■■□ 3.37
CPNE9-204ENST00000491802 MAST1Q9Y2H9 1570 aa36.04■■■■□ 3.36
CPNE9-204ENST00000491802 A2MP01023 1474 aa36.04■■■■□ 3.36
CPNE9-204ENST00000491802 TCOF1Q13428 1488 aaKnown RBP36.02■■■■□ 3.36
CPNE9-204ENST00000491802 PPARGC1BQ86YN6 1023 aaKnown RBP36■■■■□ 3.35
CPNE9-204ENST00000491802 MLECQ14165 292 aa35.98■■■■□ 3.35
CPNE9-204ENST00000491802 TSPY4P0CV99 314 aa35.95■■■■□ 3.35
CPNE9-204ENST00000491802 TSPY10P0CW01 314 aa35.95■■■■□ 3.35
CPNE9-204ENST00000491802 CROCC2H7BZ55 1655 aa35.92■■■■□ 3.34
CPNE9-204ENST00000491802 DHX29Q7Z478 1369 aaKnown RBP35.91■■■■□ 3.34
CPNE9-204ENST00000491802 SHANK2Q9UPX8 1470 aa35.91■■■■□ 3.34
CPNE9-204ENST00000491802 DNMT1P26358 1616 aaKnown RBP35.9■■■■□ 3.34
CPNE9-204ENST00000491802 ABCC5O15440 1437 aa35.88■■■■□ 3.33
CPNE9-204ENST00000491802 DAPK1P53355 1430 aa35.87■■■■□ 3.33
CPNE9-204ENST00000491802 CNTLNQ9NXG0 1405 aa35.87■■■■□ 3.33
CPNE9-204ENST00000491802 MROH2AA6NES4 1674 aa35.84■■■■□ 3.33
CPNE9-204ENST00000491802 FAM50AQ14320 339 aaKnown RBP35.83■■■■□ 3.33
CPNE9-204ENST00000491802 PPP6R1Q9UPN7 881 aa35.81■■■■□ 3.32
CPNE9-204ENST00000491802 C3P01024 1663 aa35.78■■■■□ 3.32
CPNE9-204ENST00000491802 FAM135AQ9P2D6 1515 aa35.78■■■■□ 3.32
CPNE9-204ENST00000491802 EIF2AK4Q9P2K8 1649 aaKnown RBP35.76■■■■□ 3.32
CPNE9-204ENST00000491802 ESF1Q9H501 851 aaKnown RBP35.75■■■■□ 3.31
CPNE9-204ENST00000491802 SETD1BQ9UPS6 1966 aaKnown RBP35.75■■■■□ 3.31
CPNE9-204ENST00000491802 DUOX2Q9NRD8 1548 aa35.73■■■■□ 3.31
CPNE9-204ENST00000491802 CLTCQ00610 1675 aaKnown RBP35.71■■■■□ 3.31
CPNE9-204ENST00000491802 LMTK3Q96Q04 1460 aa35.7■■■■□ 3.31
CPNE9-204ENST00000491802 RNF17Q9BXT8 1623 aaKnown RBP35.7■■■■□ 3.31
CPNE9-204ENST00000491802 KIF15Q9NS87 1388 aa35.69■■■■□ 3.3
CPNE9-204ENST00000491802 PREX1Q8TCU6 1659 aa35.68■■■■□ 3.3
CPNE9-204ENST00000491802 GGT6Q6P531 493 aa35.67■■■■□ 3.3
CPNE9-204ENST00000491802 KIF3BO15066 747 aa35.66■■■■□ 3.3
CPNE9-204ENST00000491802 PLPPR3Q6T4P5 718 aa35.65■■■■□ 3.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms