RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 KIAA2012Q0VF49 1180 aa16.74■□□□□ 0.27
COL6A3-212ENST00000491769 SUPT16HQ9Y5B9 1047 aaKnown RBP16.74■□□□□ 0.27
COL6A3-212ENST00000491769 GTF2E1P29083 439 aaPredicted RBP16.72■□□□□ 0.27
COL6A3-212ENST00000491769 KIAA1211Q6ZU35 1233 aa16.71■□□□□ 0.27
COL6A3-212ENST00000491769 HSCBQ8IWL3 235 aa16.7■□□□□ 0.26
COL6A3-212ENST00000491769 SPRYD3Q8NCJ5 442 aa16.7■□□□□ 0.26
COL6A3-212ENST00000491769 BAZ1BQ9UIG0 1483 aaKnown RBP16.69■□□□□ 0.26
COL6A3-212ENST00000491769 ERICH6BQ5W0A0 696 aa16.69■□□□□ 0.26
COL6A3-212ENST00000491769 CHAF1AQ13111 956 aaPredicted RBP16.69■□□□□ 0.26
COL6A3-212ENST00000491769 KRI1Q8N9T8 703 aaKnown RBP16.69■□□□□ 0.26
COL6A3-212ENST00000491769 FRAT2O75474 233 aaPredicted RBP16.69■□□□□ 0.26
COL6A3-212ENST00000491769 VPS53Q5VIR6 699 aa16.69■□□□□ 0.26
COL6A3-212ENST00000491769 KIF27Q86VH2 1401 aa16.68■□□□□ 0.26
COL6A3-212ENST00000491769 L1TD1Q5T7N2 865 aaKnown RBP16.68■□□□□ 0.26
COL6A3-212ENST00000491769 EID1Q9Y6B2 187 aa16.68■□□□□ 0.26
COL6A3-212ENST00000491769 NOC3LQ8WTT2 800 aaKnown RBP16.68■□□□□ 0.26
COL6A3-212ENST00000491769 GOLGA3Q08378 1498 aa16.68■□□□□ 0.26
COL6A3-212ENST00000491769 RB1CC1Q8TDY2 1594 aa16.68■□□□□ 0.26
COL6A3-212ENST00000491769 NAP1L5Q96NT1 182 aaPredicted RBP16.67■□□□□ 0.26
COL6A3-212ENST00000491769 SIN3AQ96ST3 1273 aa16.66■□□□□ 0.26
COL6A3-212ENST00000491769 MEX3CQ5U5Q3 659 aaKnown RBP16.66■□□□□ 0.26
COL6A3-212ENST00000491769 ANO8Q9HCE9 1232 aaPredicted RBP16.64■□□□□ 0.26
COL6A3-212ENST00000491769 NGDNQ8NEJ9 315 aaKnown RBP16.64■□□□□ 0.25
COL6A3-212ENST00000491769 LTV1Q96GA3 475 aaPredicted RBP16.64■□□□□ 0.25
COL6A3-212ENST00000491769 PHF23Q9BUL5 403 aaPredicted RBP16.63■□□□□ 0.25
COL6A3-212ENST00000491769 RASSF8Q8NHQ8 419 aa16.63■□□□□ 0.25
COL6A3-212ENST00000491769 KLHL34Q8N239 644 aa16.63■□□□□ 0.25
COL6A3-212ENST00000491769 HSP90B1P14625 803 aaKnown RBP16.63■□□□□ 0.25
COL6A3-212ENST00000491769 NUTM2FA1L443 756 aa16.62■□□□□ 0.25
COL6A3-212ENST00000491769 NUTM2DQ5VT03 806 aaPredicted RBP16.62■□□□□ 0.25
COL6A3-212ENST00000491769 SPAG9O60271 1321 aaKnown RBP16.62■□□□□ 0.25
COL6A3-212ENST00000491769 U2AF1L5P0DN76 240 aaPredicted RBP16.61■□□□□ 0.25
COL6A3-212ENST00000491769 U2AF1Q01081 240 aaKnown RBP eCLIP16.61■□□□□ 0.25
COL6A3-212ENST00000491769 TOMM22Q9NS69 142 aa16.61■□□□□ 0.25
COL6A3-212ENST00000491769 STK31Q9BXU1 1019 aa16.6■□□□□ 0.25
COL6A3-212ENST00000491769 MARCH6O60337 910 aa16.59■□□□□ 0.25
COL6A3-212ENST00000491769 EVA1CP58658 441 aa16.59■□□□□ 0.25
COL6A3-212ENST00000491769 IPO8O15397 1037 aaKnown RBP16.59■□□□□ 0.25
COL6A3-212ENST00000491769 WRNQ14191 1432 aaPredicted RBP eCLIP16.59■□□□□ 0.25
COL6A3-212ENST00000491769 CALD1Q05682 793 aaKnown RBP16.58■□□□□ 0.25
COL6A3-212ENST00000491769 B4GALNT3Q6L9W6 998 aa16.58■□□□□ 0.25
COL6A3-212ENST00000491769 CEP162Q5TB80 1403 aa16.58■□□□□ 0.25
COL6A3-212ENST00000491769 ITPRIPQ8IWB1 547 aa16.58■□□□□ 0.24
COL6A3-212ENST00000491769 AMPHP49418 695 aa16.58■□□□□ 0.24
COL6A3-212ENST00000491769 CREBRFQ8IUR6 639 aa16.58■□□□□ 0.24
COL6A3-212ENST00000491769 GPATCH3Q96I76 525 aa16.57■□□□□ 0.24
COL6A3-212ENST00000491769 CFAP44Q96MT7 982 aa16.56■□□□□ 0.24
COL6A3-212ENST00000491769 DCAF1Q9Y4B6 1507 aa16.55■□□□□ 0.24
COL6A3-212ENST00000491769 SLC4A10Q6U841 1118 aa16.55■□□□□ 0.24
COL6A3-212ENST00000491769 TRIM6-TRIM34B2RNG4 842 aa16.54■□□□□ 0.24
COL6A3-212ENST00000491769 RAD21O60216 631 aa16.53■□□□□ 0.24
COL6A3-212ENST00000491769 WWC1Q8IX03 1113 aa16.53■□□□□ 0.24
COL6A3-212ENST00000491769 PPP4R2Q9NY27 417 aa16.53■□□□□ 0.24
COL6A3-212ENST00000491769 CHMP4AQ9BY43 222 aa16.52■□□□□ 0.24
COL6A3-212ENST00000491769 CTDP1Q9Y5B0 961 aaPredicted RBP16.52■□□□□ 0.24
COL6A3-212ENST00000491769 A0A0U1RQG5 324 aaPredicted RBP16.52■□□□□ 0.23
COL6A3-212ENST00000491769 DCAF8L1A6NGE4 600 aa16.52■□□□□ 0.23
COL6A3-212ENST00000491769 HTATSF1O43719 755 aaKnown RBP16.52■□□□□ 0.23
COL6A3-212ENST00000491769 PKD2Q13563 968 aa16.52■□□□□ 0.23
COL6A3-212ENST00000491769 MSNP26038 577 aaKnown RBP16.51■□□□□ 0.23
COL6A3-212ENST00000491769 TRIM34Q9BYJ4 488 aa16.51■□□□□ 0.23
COL6A3-212ENST00000491769 KIF3BO15066 747 aa16.51■□□□□ 0.23
COL6A3-212ENST00000491769 CEP89Q96ST8 783 aa16.51■□□□□ 0.23
COL6A3-212ENST00000491769 RTN4Q9NQC3 1192 aaKnown RBP16.51■□□□□ 0.23
COL6A3-212ENST00000491769 CNKSR2Q8WXI2 1034 aa16.51■□□□□ 0.23
COL6A3-212ENST00000491769 CWC22Q9HCG8 908 aaKnown RBP16.51■□□□□ 0.23
COL6A3-212ENST00000491769 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.5■□□□□ 0.23
COL6A3-212ENST00000491769 FBXW7Q969H0 707 aa16.5■□□□□ 0.23
COL6A3-212ENST00000491769 EEA1Q15075 1411 aa16.5■□□□□ 0.23
COL6A3-212ENST00000491769 EFCAB2Q5VUJ9 269 aa16.49■□□□□ 0.23
COL6A3-212ENST00000491769 CARMIL2Q6F5E8 1435 aa16.49■□□□□ 0.23
COL6A3-212ENST00000491769 TPM4P67936 248 aa16.48■□□□□ 0.23
COL6A3-212ENST00000491769 CCDC34Q96HJ3 373 aa16.48■□□□□ 0.23
COL6A3-212ENST00000491769 FOXD1Q16676 465 aa16.48■□□□□ 0.23
COL6A3-212ENST00000491769 TCEAL9Q9UHQ7 104 aa16.48■□□□□ 0.23
COL6A3-212ENST00000491769 KTN1Q86UP2 1357 aaKnown RBP16.48■□□□□ 0.23
COL6A3-212ENST00000491769 WASHC2CQ9Y4E1 1318 aa16.48■□□□□ 0.23
COL6A3-212ENST00000491769 HDAC5Q9UQL6 1122 aa16.48■□□□□ 0.23
COL6A3-212ENST00000491769 TERF2IPQ9NYB0 399 aa16.47■□□□□ 0.23
COL6A3-212ENST00000491769 ROCK2O75116 1388 aaKnown RBP16.47■□□□□ 0.23
COL6A3-212ENST00000491769 SYTL4Q96C24 671 aaPredicted RBP16.46■□□□□ 0.23
COL6A3-212ENST00000491769 NOL8Q76FK4 1167 aaKnown RBP16.46■□□□□ 0.22
COL6A3-212ENST00000491769 CEP164Q9UPV0 1460 aa16.45■□□□□ 0.22
COL6A3-212ENST00000491769 FBXO3Q9UK99 471 aa16.44■□□□□ 0.22
COL6A3-212ENST00000491769 NOP58Q9Y2X3 529 aaKnown RBP16.43■□□□□ 0.22
COL6A3-212ENST00000491769 FHAD1B1AJZ9 1412 aa16.43■□□□□ 0.22
COL6A3-212ENST00000491769 CUX2O14529 1486 aa16.43■□□□□ 0.22
COL6A3-212ENST00000491769 NGEFQ8N5V2 710 aa16.43■□□□□ 0.22
COL6A3-212ENST00000491769 NOL10Q9BSC4 688 aaKnown RBP16.43■□□□□ 0.22
COL6A3-212ENST00000491769 C1orf141Q5JVX7 400 aa16.43■□□□□ 0.22
COL6A3-212ENST00000491769 SMC4Q9NTJ3 1288 aa16.43■□□□□ 0.22
COL6A3-212ENST00000491769 CARMIL1Q5VZK9 1371 aa16.43■□□□□ 0.22
COL6A3-212ENST00000491769 HMMRO75330 724 aa16.42■□□□□ 0.22
COL6A3-212ENST00000491769 RWDD1Q9H446 243 aaPredicted RBP16.42■□□□□ 0.22
COL6A3-212ENST00000491769 EIF3AQ14152 1382 aaKnown RBP16.41■□□□□ 0.22
COL6A3-212ENST00000491769 PES1O00541 588 aaKnown RBP16.41■□□□□ 0.22
COL6A3-212ENST00000491769 HSPA5P11021 654 aaKnown RBP16.39■□□□□ 0.21
COL6A3-212ENST00000491769 NUP155O75694 1391 aa16.39■□□□□ 0.21
COL6A3-212ENST00000491769 AMOTL1Q8IY63 956 aa16.39■□□□□ 0.21
COL6A3-212ENST00000491769 SAMD1Q6SPF0 538 aaPredicted RBP16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms