RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 FBXO22Q8NEZ5 403 aa14.72□□□□□ -0.05
SCN1A-206ENST00000491429 NLRP6P59044 892 aa14.7□□□□□ -0.06
SCN1A-206ENST00000491429 TAOK2Q9UL54 1235 aa14.7□□□□□ -0.06
SCN1A-206ENST00000491429 STK25O00506 426 aa14.68□□□□□ -0.06
SCN1A-206ENST00000491429 PKD2Q13563 968 aa14.67□□□□□ -0.06
SCN1A-206ENST00000491429 MFRPQ9BY79 579 aa14.67□□□□□ -0.06
SCN1A-206ENST00000491429 RIMBP2O15034 1052 aa14.66□□□□□ -0.06
SCN1A-206ENST00000491429 ERBB3P21860 1342 aa14.66□□□□□ -0.06
SCN1A-206ENST00000491429 RGL2O15211 777 aa14.65□□□□□ -0.06
SCN1A-206ENST00000491429 VARS2Q5ST30 1063 aaKnown RBP14.59□□□□□ -0.07
SCN1A-206ENST00000491429 GPR153Q6NV75 609 aa14.59□□□□□ -0.07
SCN1A-206ENST00000491429 ZSWIM6Q9HCJ5 1215 aa14.59□□□□□ -0.07
SCN1A-206ENST00000491429 ARSIQ5FYB1 569 aa14.53□□□□□ -0.08
SCN1A-206ENST00000491429 KHSRPQ92945 711 aaKnown RBP eCLIP14.51□□□□□ -0.09
SCN1A-206ENST00000491429 KIF3CO14782 793 aa14.49□□□□□ -0.09
SCN1A-206ENST00000491429 C2orf72A6NCS6 295 aa14.48□□□□□ -0.09
SCN1A-206ENST00000491429 ZNF687Q8N1G0 1237 aa14.45□□□□□ -0.1
SCN1A-206ENST00000491429 PPP1R37O75864 691 aa14.43□□□□□ -0.1
SCN1A-206ENST00000491429 ZNF316A6NFI3 1004 aaPredicted RBP14.39□□□□□ -0.11
SCN1A-206ENST00000491429 TMC2Q8TDI7 906 aa14.36□□□□□ -0.11
SCN1A-206ENST00000491429 NUDT7P0C024 238 aa14.35□□□□□ -0.11
SCN1A-206ENST00000491429 RNF166Q96A37 237 aaPredicted RBP14.32□□□□□ -0.12
SCN1A-206ENST00000491429 SLC34A2O95436 690 aa14.31□□□□□ -0.12
SCN1A-206ENST00000491429 PCDHGA4Q9Y5G9 962 aa14.31□□□□□ -0.12
SCN1A-206ENST00000491429 HS6ST3Q8IZP7 471 aa14.3□□□□□ -0.12
SCN1A-206ENST00000491429 MYT1LQ9UL68 1186 aa14.29□□□□□ -0.12
SCN1A-206ENST00000491429 LHX6Q9UPM6 363 aa14.28□□□□□ -0.12
SCN1A-206ENST00000491429 ANKRD13DQ6ZTN6 518 aa14.27□□□□□ -0.13
SCN1A-206ENST00000491429 CHGAP10645 457 aaKnown RBP14.23□□□□□ -0.13
SCN1A-206ENST00000491429 LSM11P83369 360 aaKnown RBP eCLIP14.23□□□□□ -0.13
SCN1A-206ENST00000491429 POTEEQ6S8J3 1075 aa14.21□□□□□ -0.13
SCN1A-206ENST00000491429 AXIN2Q9Y2T1 843 aa14.19□□□□□ -0.14
SCN1A-206ENST00000491429 PTGER2P43116 358 aa14.18□□□□□ -0.14
SCN1A-206ENST00000491429 NKX1-1Q15270 411 aaPredicted RBP14.17□□□□□ -0.14
SCN1A-206ENST00000491429 PBX2P40425 430 aa14.16□□□□□ -0.14
SCN1A-206ENST00000491429 FOXK1P85037 733 aa14.16□□□□□ -0.14
SCN1A-206ENST00000491429 PLPP6Q8IY26 295 aa14.16□□□□□ -0.14
SCN1A-206ENST00000491429 GPHNQ9NQX3 736 aaPredicted RBP14.15□□□□□ -0.14
SCN1A-206ENST00000491429 KDM4FA0A1W2PPD8 638 aa14.14□□□□□ -0.15
SCN1A-206ENST00000491429 DSG2Q14126 1118 aa14.14□□□□□ -0.15
SCN1A-206ENST00000491429 PTCD2Q8WV60 388 aaKnown RBP14.14□□□□□ -0.15
SCN1A-206ENST00000491429 DNAJC5Q9H3Z4 198 aa14.09□□□□□ -0.15
SCN1A-206ENST00000491429 PSDA5PKW4 1024 aaPredicted RBP14.05□□□□□ -0.16
SCN1A-206ENST00000491429 ARHGAP33O14559 1287 aa14.04□□□□□ -0.16
SCN1A-206ENST00000491429 ADGRD1Q6QNK2 874 aa14.01□□□□□ -0.17
SCN1A-206ENST00000491429 TBC1D12O60347 775 aa14□□□□□ -0.17
SCN1A-206ENST00000491429 PSEN2P49810 448 aa14□□□□□ -0.17
SCN1A-206ENST00000491429 DMRTA1Q5VZB9 504 aa13.99□□□□□ -0.17
SCN1A-206ENST00000491429 CRISPLD2Q9H0B8 497 aa13.99□□□□□ -0.17
SCN1A-206ENST00000491429 UPF1Q92900 1129 aaKnown RBP eCLIP13.98□□□□□ -0.17
SCN1A-206ENST00000491429 RYDENQ9NUL5 291 aaKnown RBP13.98□□□□□ -0.17
SCN1A-206ENST00000491429 PPP4R3BQ5MIZ7 849 aa13.97□□□□□ -0.17
SCN1A-206ENST00000491429 OXER1Q8TDS5 423 aa13.96□□□□□ -0.17
SCN1A-206ENST00000491429 NCKAP5LQ9HCH0 1330 aa13.93□□□□□ -0.18
SCN1A-206ENST00000491429 PPP1R15BQ5SWA1 713 aa13.93□□□□□ -0.18
SCN1A-206ENST00000491429 TK2O00142 265 aa13.91□□□□□ -0.18
SCN1A-206ENST00000491429 GTPBP6O43824 516 aaPredicted RBP13.91□□□□□ -0.18
SCN1A-206ENST00000491429 HRO43593 1189 aa13.9□□□□□ -0.18
SCN1A-206ENST00000491429 KCNK17Q96T54 332 aa13.9□□□□□ -0.18
SCN1A-206ENST00000491429 PDE4AP27815 886 aa13.86□□□□□ -0.19
SCN1A-206ENST00000491429 ZNF454Q8N9F8 522 aa13.86□□□□□ -0.19
SCN1A-206ENST00000491429 HCSTQ9UBK5 93 aa13.86□□□□□ -0.19
SCN1A-206ENST00000491429 DCAF8L2P0C7V8 631 aa13.82□□□□□ -0.2
SCN1A-206ENST00000491429 LARP6Q9BRS8 491 aaKnown RBP13.82□□□□□ -0.2
SCN1A-206ENST00000491429 KCNH8Q96L42 1107 aa13.8□□□□□ -0.2
SCN1A-206ENST00000491429 FOSBP53539 338 aa13.79□□□□□ -0.2
SCN1A-206ENST00000491429 KCTD12Q96CX2 325 aaKnown RBP13.79□□□□□ -0.2
SCN1A-206ENST00000491429 PLA2G2EQ9NZK7 142 aa13.79□□□□□ -0.2
SCN1A-206ENST00000491429 VPS9D1Q9Y2B5 631 aa13.79□□□□□ -0.2
SCN1A-206ENST00000491429 DDX27Q96GQ7 796 aaKnown RBP13.78□□□□□ -0.2
SCN1A-206ENST00000491429 BCL2L12Q9HB09 334 aa13.78□□□□□ -0.2
SCN1A-206ENST00000491429 EVI5O60447 810 aa13.77□□□□□ -0.21
SCN1A-206ENST00000491429 STAC3Q96MF2 364 aa13.76□□□□□ -0.21
SCN1A-206ENST00000491429 ANO8Q9HCE9 1232 aaPredicted RBP13.76□□□□□ -0.21
SCN1A-206ENST00000491429 MFSD10Q14728 455 aa13.74□□□□□ -0.21
SCN1A-206ENST00000491429 JPH4Q96JJ6 628 aa13.73□□□□□ -0.21
SCN1A-206ENST00000491429 CADPS2Q86UW7 1296 aa13.72□□□□□ -0.21
SCN1A-206ENST00000491429 PTPREP23469 700 aa13.71□□□□□ -0.21
SCN1A-206ENST00000491429 EMILIN3Q9NT22 766 aa13.71□□□□□ -0.21
SCN1A-206ENST00000491429 MAP3K9P80192 1104 aa13.7□□□□□ -0.22
SCN1A-206ENST00000491429 SLC4A5Q9BY07 1137 aa13.7□□□□□ -0.22
SCN1A-206ENST00000491429 ADAM33Q9BZ11 813 aa13.7□□□□□ -0.22
SCN1A-206ENST00000491429 ZDHHC16Q969W1 377 aa13.68□□□□□ -0.22
SCN1A-206ENST00000491429 ZBED2Q9BTP6 218 aa13.68□□□□□ -0.22
SCN1A-206ENST00000491429 BHMG1C9JSJ3 638 aaPredicted RBP13.66□□□□□ -0.22
SCN1A-206ENST00000491429 PTPN5P54829 565 aa13.64□□□□□ -0.23
SCN1A-206ENST00000491429 PCDHGA10Q9Y5H3 936 aa13.61□□□□□ -0.23
SCN1A-206ENST00000491429 THSD4Q6ZMP0 1018 aa13.58□□□□□ -0.24
SCN1A-206ENST00000491429 MRPL50Q8N5N7 158 aaKnown RBP13.58□□□□□ -0.24
SCN1A-206ENST00000491429 GOLGA8CPA6NN73 597 aa13.56□□□□□ -0.24
SCN1A-206ENST00000491429 WNT2BQ93097 391 aa13.56□□□□□ -0.24
SCN1A-206ENST00000491429 COL9A1P20849 921 aa13.55□□□□□ -0.24
SCN1A-206ENST00000491429 PPP1R3GB7ZBB8 358 aa13.54□□□□□ -0.24
SCN1A-206ENST00000491429 PROX2Q3B8N5 592 aa13.54□□□□□ -0.24
SCN1A-206ENST00000491429 PHF14O94880 888 aa13.52□□□□□ -0.25
SCN1A-206ENST00000491429 CAMK2BQ13554 666 aa13.52□□□□□ -0.25
SCN1A-206ENST00000491429 TYW1BQ6NUM6 668 aa13.52□□□□□ -0.25
SCN1A-206ENST00000491429 NBPF3Q9H094 633 aa13.52□□□□□ -0.25
SCN1A-206ENST00000491429 DPYSL4O14531 572 aa13.51□□□□□ -0.25
SCN1A-206ENST00000491429 FBXW7Q969H0 707 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms