RNA–Protein interactions for RNA: ENST00000490993.5

NPHP3-208, Transcript of nephrocystin 3, humanhuman

TSL 5

Gene NPHP3, Length 5,197 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-208ENST00000490993 CARD11Q9BXL7 1154 aa10□□□□□ -0.81
NPHP3-208ENST00000490993 KANK1Q14678 1352 aa10□□□□□ -0.81
NPHP3-208ENST00000490993 HSPA5P11021 654 aaKnown RBP10□□□□□ -0.81
NPHP3-208ENST00000490993 MYT1Q01538 1121 aa10□□□□□ -0.81
NPHP3-208ENST00000490993 PRG4Q92954 1404 aaPredicted RBP9.99□□□□□ -0.81
NPHP3-208ENST00000490993 MRS2Q9HD23 443 aa9.99□□□□□ -0.81
NPHP3-208ENST00000490993 UGGT2Q9NYU1 1516 aa9.98□□□□□ -0.81
NPHP3-208ENST00000490993 HNRNPMP52272 730 aaKnown RBP eCLIP9.98□□□□□ -0.81
NPHP3-208ENST00000490993 ROCK1Q13464 1354 aa9.98□□□□□ -0.81
NPHP3-208ENST00000490993 PTPN23Q9H3S7 1636 aa9.98□□□□□ -0.81
NPHP3-208ENST00000490993 L3MBTL2Q969R5 705 aa9.98□□□□□ -0.81
NPHP3-208ENST00000490993 CDK13Q14004 1512 aaKnown RBP9.97□□□□□ -0.81
NPHP3-208ENST00000490993 FOXD1Q16676 465 aa9.97□□□□□ -0.81
NPHP3-208ENST00000490993 FAM9BQ8IZU0 186 aa9.97□□□□□ -0.81
NPHP3-208ENST00000490993 TMC1Q8TDI8 760 aa9.97□□□□□ -0.81
NPHP3-208ENST00000490993 PBRM1Q86U86 1689 aa9.96□□□□□ -0.81
NPHP3-208ENST00000490993 CDCA8Q53HL2 280 aa9.96□□□□□ -0.81
NPHP3-208ENST00000490993 DAPK1P53355 1430 aa9.96□□□□□ -0.82
NPHP3-208ENST00000490993 RGL3Q3MIN7 710 aa9.95□□□□□ -0.82
NPHP3-208ENST00000490993 NAIPQ13075 1403 aa9.95□□□□□ -0.82
NPHP3-208ENST00000490993 SAMD9Q5K651 1589 aa9.95□□□□□ -0.82
NPHP3-208ENST00000490993 TARBP1Q13395 1621 aaKnown RBP9.95□□□□□ -0.82
NPHP3-208ENST00000490993 SLC24A1O60721 1099 aa9.95□□□□□ -0.82
NPHP3-208ENST00000490993 CHGAP10645 457 aaKnown RBP9.95□□□□□ -0.82
NPHP3-208ENST00000490993 DCAF11Q8TEB1 546 aa9.95□□□□□ -0.82
NPHP3-208ENST00000490993 FKBP8Q14318 412 aa9.94□□□□□ -0.82
NPHP3-208ENST00000490993 BCANQ96GW7 911 aa9.94□□□□□ -0.82
NPHP3-208ENST00000490993 ZNF644Q9H582 1327 aaPredicted RBP9.94□□□□□ -0.82
NPHP3-208ENST00000490993 AKNAQ7Z591 1439 aa9.94□□□□□ -0.82
NPHP3-208ENST00000490993 ANKRD50Q9ULJ7 1429 aa9.93□□□□□ -0.82
NPHP3-208ENST00000490993 PLEKHH2Q8IVE3 1493 aa9.93□□□□□ -0.82
NPHP3-208ENST00000490993 ESF1Q9H501 851 aaKnown RBP9.92□□□□□ -0.82
NPHP3-208ENST00000490993 RAPGEF6Q8TEU7 1601 aa9.92□□□□□ -0.82
NPHP3-208ENST00000490993 SPAG9O60271 1321 aaKnown RBP9.92□□□□□ -0.82
NPHP3-208ENST00000490993 KIAA0556O60303 1618 aa9.92□□□□□ -0.82
NPHP3-208ENST00000490993 EIF4G3O43432 1585 aaKnown RBP9.91□□□□□ -0.82
NPHP3-208ENST00000490993 KIF15Q9NS87 1388 aa9.91□□□□□ -0.82
NPHP3-208ENST00000490993 ROCK2O75116 1388 aaKnown RBP9.9□□□□□ -0.82
NPHP3-208ENST00000490993 TCOF1Q13428 1488 aaKnown RBP9.9□□□□□ -0.82
NPHP3-208ENST00000490993 KIF14Q15058 1648 aa9.9□□□□□ -0.83
NPHP3-208ENST00000490993 PLB1Q6P1J6 1458 aa9.89□□□□□ -0.83
NPHP3-208ENST00000490993 STAG3Q9UJ98 1225 aa9.89□□□□□ -0.83
NPHP3-208ENST00000490993 CCDC144AA2RUR9 1427 aa9.89□□□□□ -0.83
NPHP3-208ENST00000490993 C9orf84Q5VXU9 1444 aa9.89□□□□□ -0.83
NPHP3-208ENST00000490993 ARHGAP5Q13017 1502 aa9.88□□□□□ -0.83
NPHP3-208ENST00000490993 TMF1P82094 1093 aa9.88□□□□□ -0.83
NPHP3-208ENST00000490993 CAMSAP2Q08AD1 1489 aa9.88□□□□□ -0.83
NPHP3-208ENST00000490993 ABCC5O15440 1437 aa9.88□□□□□ -0.83
NPHP3-208ENST00000490993 OSCARQ8IYS5 282 aa9.88□□□□□ -0.83
NPHP3-208ENST00000490993 NUP153P49790 1475 aaKnown RBP9.87□□□□□ -0.83
NPHP3-208ENST00000490993 KIAA1107Q9UPP5 1409 aa9.86□□□□□ -0.83
NPHP3-208ENST00000490993 ARID4BQ4LE39 1312 aaPredicted RBP9.86□□□□□ -0.83
NPHP3-208ENST00000490993 NUP160Q12769 1436 aa9.86□□□□□ -0.83
NPHP3-208ENST00000490993 WDR43Q15061 677 aaKnown RBP eCLIP9.85□□□□□ -0.83
NPHP3-208ENST00000490993 ITSN2Q9NZM3 1697 aa9.85□□□□□ -0.83
NPHP3-208ENST00000490993 KNSTRNQ9Y448 316 aa9.85□□□□□ -0.83
NPHP3-208ENST00000490993 MAPKBP1O60336 1514 aa9.85□□□□□ -0.83
NPHP3-208ENST00000490993 STAC3Q96MF2 364 aa9.84□□□□□ -0.83
NPHP3-208ENST00000490993 DISP1Q96F81 1524 aa9.84□□□□□ -0.83
NPHP3-208ENST00000490993 RALBP1Q15311 655 aa9.83□□□□□ -0.84
NPHP3-208ENST00000490993 CCDC141Q6ZP82 1450 aa9.83□□□□□ -0.84
NPHP3-208ENST00000490993 EIF3AQ14152 1382 aaKnown RBP9.82□□□□□ -0.84
NPHP3-208ENST00000490993 USP47Q96K76 1375 aa9.82□□□□□ -0.84
NPHP3-208ENST00000490993 KIF3BO15066 747 aa9.82□□□□□ -0.84
NPHP3-208ENST00000490993 GPATCH8Q9UKJ3 1502 aaKnown RBP9.82□□□□□ -0.84
NPHP3-208ENST00000490993 PTPRKQ15262 1439 aa9.82□□□□□ -0.84
NPHP3-208ENST00000490993 NEFMP07197 916 aa9.82□□□□□ -0.84
NPHP3-208ENST00000490993 ARHGEF11O15085 1522 aa9.82□□□□□ -0.84
NPHP3-208ENST00000490993 NCOA1Q15788 1441 aa9.81□□□□□ -0.84
NPHP3-208ENST00000490993 KTN1Q86UP2 1357 aaKnown RBP9.81□□□□□ -0.84
NPHP3-208ENST00000490993 SUPT16HQ9Y5B9 1047 aaKnown RBP9.8□□□□□ -0.84
NPHP3-208ENST00000490993 CCDC7Q96M83 1385 aa9.8□□□□□ -0.84
NPHP3-208ENST00000490993 ANKRD30BQ9BXX2 1392 aa9.8□□□□□ -0.84
NPHP3-208ENST00000490993 ATP10BO94823 1461 aa9.8□□□□□ -0.84
NPHP3-208ENST00000490993 DAXXQ9UER7 740 aaPredicted RBP9.8□□□□□ -0.84
NPHP3-208ENST00000490993 CNTLNQ9NXG0 1405 aa9.79□□□□□ -0.84
NPHP3-208ENST00000490993 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.79□□□□□ -0.84
NPHP3-208ENST00000490993 ERICH6BQ5W0A0 696 aa9.78□□□□□ -0.84
NPHP3-208ENST00000490993 CEP170Q5SW79 1584 aa9.77□□□□□ -0.84
NPHP3-208ENST00000490993 GGT6Q6P531 493 aa9.77□□□□□ -0.85
NPHP3-208ENST00000490993 CANXP27824 592 aaKnown RBP9.77□□□□□ -0.85
NPHP3-208ENST00000490993 PRKRIP1Q9H875 184 aaPredicted RBP9.77□□□□□ -0.85
NPHP3-208ENST00000490993 RPRD2Q5VT52 1461 aaKnown RBP9.76□□□□□ -0.85
NPHP3-208ENST00000490993 DNMT1P26358 1616 aaKnown RBP9.76□□□□□ -0.85
NPHP3-208ENST00000490993 ST20-MTHFSA0A0A6YYL1 179 aa9.76□□□□□ -0.85
NPHP3-208ENST00000490993 SHANK2Q9UPX8 1470 aa9.76□□□□□ -0.85
NPHP3-208ENST00000490993 WASHC2AQ641Q2 1341 aa9.75□□□□□ -0.85
NPHP3-208ENST00000490993 CCDC136Q96JN2 1154 aa9.75□□□□□ -0.85
NPHP3-208ENST00000490993 KIF7Q2M1P5 1343 aa9.75□□□□□ -0.85
NPHP3-208ENST00000490993 CFAP53Q96M91 514 aa9.75□□□□□ -0.85
NPHP3-208ENST00000490993 PPP4R2Q9NY27 417 aa9.74□□□□□ -0.85
NPHP3-208ENST00000490993 WASHC2CQ9Y4E1 1318 aa9.74□□□□□ -0.85
NPHP3-208ENST00000490993 CC2D1BQ5T0F9 858 aaKnown RBP9.74□□□□□ -0.85
NPHP3-208ENST00000490993 SALL2Q9Y467 1007 aaPredicted RBP9.73□□□□□ -0.85
NPHP3-208ENST00000490993 MAGI3Q5TCQ9 1506 aa9.73□□□□□ -0.85
NPHP3-208ENST00000490993 MYBBP1AQ9BQG0 1328 aaKnown RBP9.73□□□□□ -0.85
NPHP3-208ENST00000490993 NBPF8Q3BBV2 869 aa9.73□□□□□ -0.85
NPHP3-208ENST00000490993 HDGFP51858 240 aaKnown RBP9.72□□□□□ -0.85
NPHP3-208ENST00000490993 NLRP13Q86W25 1043 aa9.72□□□□□ -0.85
NPHP3-208ENST00000490993 ADGRL2O95490 1459 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms