RNA–Protein interactions for RNA: ENST00000490883.1

SEMA3A-207, Transcript of semaphorin 3A, humanhuman

TSL 5

Gene SEMA3A, Length 237 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3A-207ENST00000490883 TAOK2Q9UL54 1235 aa12.42□□□□□ -0.42
SEMA3A-207ENST00000490883 HOXB1P14653 301 aaPredicted RBP12.41□□□□□ -0.42
SEMA3A-207ENST00000490883 SPNS2Q8IVW8 549 aa12.41□□□□□ -0.42
SEMA3A-207ENST00000490883 DOK7Q18PE1 504 aa12.4□□□□□ -0.42
SEMA3A-207ENST00000490883 KRTAP3-3Q9BYR6 98 aa12.4□□□□□ -0.42
SEMA3A-207ENST00000490883 KRTAP3-2Q9BYR7 98 aa12.4□□□□□ -0.42
SEMA3A-207ENST00000490883 MMRN1Q13201 1228 aa12.36□□□□□ -0.43
SEMA3A-207ENST00000490883 ERBB3P21860 1342 aa12.33□□□□□ -0.44
SEMA3A-207ENST00000490883 RIMBP2O15034 1052 aa12.31□□□□□ -0.44
SEMA3A-207ENST00000490883 GPR153Q6NV75 609 aa12.31□□□□□ -0.44
SEMA3A-207ENST00000490883 PPP1R37O75864 691 aa12.3□□□□□ -0.44
SEMA3A-207ENST00000490883 VARS2Q5ST30 1063 aaKnown RBP12.29□□□□□ -0.44
SEMA3A-207ENST00000490883 KHSRPQ92945 711 aaKnown RBP eCLIP12.29□□□□□ -0.44
SEMA3A-207ENST00000490883 ARSIQ5FYB1 569 aa12.28□□□□□ -0.44
SEMA3A-207ENST00000490883 C2orf72A6NCS6 295 aa12.27□□□□□ -0.45
SEMA3A-207ENST00000490883 KIF3CO14782 793 aa12.25□□□□□ -0.45
SEMA3A-207ENST00000490883 ZSWIM6Q9HCJ5 1215 aa12.25□□□□□ -0.45
SEMA3A-207ENST00000490883 CHGAP10645 457 aaKnown RBP12.16□□□□□ -0.46
SEMA3A-207ENST00000490883 HS6ST3Q8IZP7 471 aa12.16□□□□□ -0.46
SEMA3A-207ENST00000490883 ZNF687Q8N1G0 1237 aa12.15□□□□□ -0.46
SEMA3A-207ENST00000490883 NUDT7P0C024 238 aa12.14□□□□□ -0.47
SEMA3A-207ENST00000490883 TMC2Q8TDI7 906 aa12.14□□□□□ -0.47
SEMA3A-207ENST00000490883 ZNF316A6NFI3 1004 aaPredicted RBP12.13□□□□□ -0.47
SEMA3A-207ENST00000490883 NKX1-1Q15270 411 aaPredicted RBP12.1□□□□□ -0.47
SEMA3A-207ENST00000490883 PCDHGA4Q9Y5G9 962 aa12.1□□□□□ -0.47
SEMA3A-207ENST00000490883 SLC34A2O95436 690 aa12.06□□□□□ -0.48
SEMA3A-207ENST00000490883 LHX6Q9UPM6 363 aa12.06□□□□□ -0.48
SEMA3A-207ENST00000490883 POTEEQ6S8J3 1075 aa12.03□□□□□ -0.48
SEMA3A-207ENST00000490883 ANKRD13DQ6ZTN6 518 aa12.03□□□□□ -0.48
SEMA3A-207ENST00000490883 PLPP6Q8IY26 295 aa12.01□□□□□ -0.49
SEMA3A-207ENST00000490883 AXIN2Q9Y2T1 843 aa12.01□□□□□ -0.49
SEMA3A-207ENST00000490883 DSG2Q14126 1118 aa12□□□□□ -0.49
SEMA3A-207ENST00000490883 GPHNQ9NQX3 736 aaPredicted RBP12□□□□□ -0.49
SEMA3A-207ENST00000490883 FOXK1P85037 733 aa11.99□□□□□ -0.49
SEMA3A-207ENST00000490883 RNF166Q96A37 237 aaPredicted RBP11.99□□□□□ -0.49
SEMA3A-207ENST00000490883 MYT1LQ9UL68 1186 aa11.98□□□□□ -0.49
SEMA3A-207ENST00000490883 DNAJC5Q9H3Z4 198 aa11.97□□□□□ -0.49
SEMA3A-207ENST00000490883 KDM4FA0A1W2PPD8 638 aa11.96□□□□□ -0.49
SEMA3A-207ENST00000490883 LSM11P83369 360 aaKnown RBP eCLIP11.96□□□□□ -0.49
SEMA3A-207ENST00000490883 PTCD2Q8WV60 388 aaKnown RBP11.95□□□□□ -0.5
SEMA3A-207ENST00000490883 GTPBP6O43824 516 aaPredicted RBP11.88□□□□□ -0.51
SEMA3A-207ENST00000490883 DCAF8L2P0C7V8 631 aa11.88□□□□□ -0.51
SEMA3A-207ENST00000490883 UPF1Q92900 1129 aaKnown RBP eCLIP11.87□□□□□ -0.51
SEMA3A-207ENST00000490883 CRISPLD2Q9H0B8 497 aa11.87□□□□□ -0.51
SEMA3A-207ENST00000490883 NCKAP5LQ9HCH0 1330 aa11.86□□□□□ -0.51
SEMA3A-207ENST00000490883 PBX2P40425 430 aa11.86□□□□□ -0.51
SEMA3A-207ENST00000490883 PSEN2P49810 448 aa11.85□□□□□ -0.51
SEMA3A-207ENST00000490883 ARHGAP33O14559 1287 aa11.84□□□□□ -0.51
SEMA3A-207ENST00000490883 DMRTA1Q5VZB9 504 aa11.83□□□□□ -0.52
SEMA3A-207ENST00000490883 RYDENQ9NUL5 291 aaKnown RBP11.83□□□□□ -0.52
SEMA3A-207ENST00000490883 PTGER2P43116 358 aa11.82□□□□□ -0.52
SEMA3A-207ENST00000490883 PPP1R15BQ5SWA1 713 aa11.82□□□□□ -0.52
SEMA3A-207ENST00000490883 OXER1Q8TDS5 423 aa11.82□□□□□ -0.52
SEMA3A-207ENST00000490883 TBC1D12O60347 775 aa11.81□□□□□ -0.52
SEMA3A-207ENST00000490883 ADGRD1Q6QNK2 874 aa11.8□□□□□ -0.52
SEMA3A-207ENST00000490883 PSDA5PKW4 1024 aaPredicted RBP11.79□□□□□ -0.52
SEMA3A-207ENST00000490883 PDE4AP27815 886 aa11.78□□□□□ -0.52
SEMA3A-207ENST00000490883 PPP4R3BQ5MIZ7 849 aa11.77□□□□□ -0.53
SEMA3A-207ENST00000490883 LARP6Q9BRS8 491 aaKnown RBP11.77□□□□□ -0.53
SEMA3A-207ENST00000490883 CADPS2Q86UW7 1296 aa11.74□□□□□ -0.53
SEMA3A-207ENST00000490883 ZNF454Q8N9F8 522 aa11.73□□□□□ -0.53
SEMA3A-207ENST00000490883 KCNK17Q96T54 332 aa11.73□□□□□ -0.53
SEMA3A-207ENST00000490883 HRO43593 1189 aa11.71□□□□□ -0.53
SEMA3A-207ENST00000490883 DDX27Q96GQ7 796 aaKnown RBP11.71□□□□□ -0.53
SEMA3A-207ENST00000490883 TK2O00142 265 aa11.68□□□□□ -0.54
SEMA3A-207ENST00000490883 EMILIN3Q9NT22 766 aa11.68□□□□□ -0.54
SEMA3A-207ENST00000490883 EVI5O60447 810 aa11.67□□□□□ -0.54
SEMA3A-207ENST00000490883 FOSBP53539 338 aa11.66□□□□□ -0.54
SEMA3A-207ENST00000490883 MFSD10Q14728 455 aa11.66□□□□□ -0.54
SEMA3A-207ENST00000490883 ANO8Q9HCE9 1232 aaPredicted RBP11.66□□□□□ -0.54
SEMA3A-207ENST00000490883 MAP3K9P80192 1104 aa11.63□□□□□ -0.55
SEMA3A-207ENST00000490883 KCTD12Q96CX2 325 aaKnown RBP11.63□□□□□ -0.55
SEMA3A-207ENST00000490883 BCL2L12Q9HB09 334 aa11.63□□□□□ -0.55
SEMA3A-207ENST00000490883 VPS9D1Q9Y2B5 631 aa11.63□□□□□ -0.55
SEMA3A-207ENST00000490883 ADAM33Q9BZ11 813 aa11.61□□□□□ -0.55
SEMA3A-207ENST00000490883 HCSTQ9UBK5 93 aa11.61□□□□□ -0.55
SEMA3A-207ENST00000490883 KCNH8Q96L42 1107 aa11.59□□□□□ -0.55
SEMA3A-207ENST00000490883 JPH4Q96JJ6 628 aa11.58□□□□□ -0.56
SEMA3A-207ENST00000490883 STAC3Q96MF2 364 aa11.58□□□□□ -0.56
SEMA3A-207ENST00000490883 PTPREP23469 700 aa11.57□□□□□ -0.56
SEMA3A-207ENST00000490883 ZDHHC16Q969W1 377 aa11.57□□□□□ -0.56
SEMA3A-207ENST00000490883 PLA2G2EQ9NZK7 142 aa11.56□□□□□ -0.56
SEMA3A-207ENST00000490883 ZBED2Q9BTP6 218 aa11.55□□□□□ -0.56
SEMA3A-207ENST00000490883 PCDHGA10Q9Y5H3 936 aa11.55□□□□□ -0.56
SEMA3A-207ENST00000490883 BHMG1C9JSJ3 638 aaPredicted RBP11.54□□□□□ -0.56
SEMA3A-207ENST00000490883 PTPN5P54829 565 aa11.52□□□□□ -0.57
SEMA3A-207ENST00000490883 BBXQ8WY36 941 aaPredicted RBP11.52□□□□□ -0.57
SEMA3A-207ENST00000490883 SLC4A5Q9BY07 1137 aa11.52□□□□□ -0.57
SEMA3A-207ENST00000490883 DPYSL4O14531 572 aa11.5□□□□□ -0.57
SEMA3A-207ENST00000490883 CAMK2BQ13554 666 aa11.49□□□□□ -0.57
SEMA3A-207ENST00000490883 COL9A1P20849 921 aa11.48□□□□□ -0.57
SEMA3A-207ENST00000490883 PROX2Q3B8N5 592 aa11.48□□□□□ -0.57
SEMA3A-207ENST00000490883 MRPL50Q8N5N7 158 aaKnown RBP11.45□□□□□ -0.58
SEMA3A-207ENST00000490883 RTN4Q9NQC3 1192 aaKnown RBP11.45□□□□□ -0.58
SEMA3A-207ENST00000490883 PHF14O94880 888 aa11.44□□□□□ -0.58
SEMA3A-207ENST00000490883 TYW1BQ6NUM6 668 aa11.43□□□□□ -0.58
SEMA3A-207ENST00000490883 THSD4Q6ZMP0 1018 aa11.43□□□□□ -0.58
SEMA3A-207ENST00000490883 WNT2BQ93097 391 aa11.43□□□□□ -0.58
SEMA3A-207ENST00000490883 GOLGA8CPA6NN73 597 aa11.42□□□□□ -0.58
SEMA3A-207ENST00000490883 PPP1R3GB7ZBB8 358 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms