RNA–Protein interactions for RNA: ENST00000490475.1

TTC28-207, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 5

Gene TTC28, Length 724 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-207ENST00000490475 CCDC18Q5T9S5 1454 aa16.85■□□□□ 0.29
TTC28-207ENST00000490475 ZFYVE16Q7Z3T8 1539 aa16.85■□□□□ 0.29
TTC28-207ENST00000490475 SCAPERQ9BY12 1400 aa16.84■□□□□ 0.29
TTC28-207ENST00000490475 CASKIN1Q8WXD9 1431 aa16.81■□□□□ 0.28
TTC28-207ENST00000490475 MADDQ8WXG6 1647 aa16.8■□□□□ 0.28
TTC28-207ENST00000490475 ZNF518AQ6AHZ1 1483 aa16.8■□□□□ 0.28
TTC28-207ENST00000490475 ARHGAP5Q13017 1502 aa16.79■□□□□ 0.28
TTC28-207ENST00000490475 FYCO1Q9BQS8 1478 aa16.77■□□□□ 0.28
TTC28-207ENST00000490475 ATP10AO60312 1499 aa16.76■□□□□ 0.27
TTC28-207ENST00000490475 YEATS2Q9ULM3 1422 aa16.76■□□□□ 0.27
TTC28-207ENST00000490475 LRRIQ1Q96JM4 1722 aa16.76■□□□□ 0.27
TTC28-207ENST00000490475 C9orf84Q5VXU9 1444 aa16.75■□□□□ 0.27
TTC28-207ENST00000490475 PCF11O94913 1555 aaKnown RBP16.75■□□□□ 0.27
TTC28-207ENST00000490475 RIMS1Q86UR5 1692 aaKnown RBP16.75■□□□□ 0.27
TTC28-207ENST00000490475 KDM5CP41229 1560 aa16.72■□□□□ 0.27
TTC28-207ENST00000490475 PREX2Q70Z35 1606 aa16.72■□□□□ 0.27
TTC28-207ENST00000490475 CDC42BPBQ9Y5S2 1711 aa16.71■□□□□ 0.27
TTC28-207ENST00000490475 FER1L4A9Z1Z3 1794 aa16.71■□□□□ 0.27
TTC28-207ENST00000490475 ILDR1Q86SU0 546 aaPredicted RBP16.7■□□□□ 0.26
TTC28-207ENST00000490475 MYT1LQ9UL68 1186 aa16.7■□□□□ 0.26
TTC28-207ENST00000490475 REREQ9P2R6 1566 aa16.68■□□□□ 0.26
TTC28-207ENST00000490475 MLH3Q9UHC1 1453 aa16.68■□□□□ 0.26
TTC28-207ENST00000490475 LMTK3Q96Q04 1460 aa16.67■□□□□ 0.26
TTC28-207ENST00000490475 ARHGEF12Q9NZN5 1544 aa16.67■□□□□ 0.26
TTC28-207ENST00000490475 AFAP1Q8N556 730 aa16.67■□□□□ 0.26
TTC28-207ENST00000490475 ABCC1P33527 1531 aa16.66■□□□□ 0.26
TTC28-207ENST00000490475 MLECQ14165 292 aa16.66■□□□□ 0.26
TTC28-207ENST00000490475 SIGLEC1Q9BZZ2 1709 aa16.66■□□□□ 0.26
TTC28-207ENST00000490475 CDC42BPAQ5VT25 1732 aa16.65■□□□□ 0.26
TTC28-207ENST00000490475 ITSN2Q9NZM3 1697 aa16.64■□□□□ 0.25
TTC28-207ENST00000490475 PLEKHH2Q8IVE3 1493 aa16.63■□□□□ 0.25
TTC28-207ENST00000490475 SETD1BQ9UPS6 1966 aaKnown RBP16.63■□□□□ 0.25
TTC28-207ENST00000490475 DIP2CQ9Y2E4 1556 aa16.63■□□□□ 0.25
TTC28-207ENST00000490475 AGLP35573 1532 aa16.62■□□□□ 0.25
TTC28-207ENST00000490475 ESF1Q9H501 851 aaKnown RBP16.62■□□□□ 0.25
TTC28-207ENST00000490475 MTUS2Q5JR59 1369 aa16.61■□□□□ 0.25
TTC28-207ENST00000490475 TRAPPC8Q9Y2L5 1435 aa16.6■□□□□ 0.25
TTC28-207ENST00000490475 LOC105371045A0A1W2PR82 267 aa16.59■□□□□ 0.25
TTC28-207ENST00000490475 CCNB3Q8WWL7 1395 aa16.59■□□□□ 0.25
TTC28-207ENST00000490475 KIAA1107Q9UPP5 1409 aa16.59■□□□□ 0.25
TTC28-207ENST00000490475 GPATCH8Q9UKJ3 1502 aaKnown RBP16.59■□□□□ 0.25
TTC28-207ENST00000490475 ABCA6Q8N139 1617 aa16.59■□□□□ 0.25
TTC28-207ENST00000490475 PREX1Q8TCU6 1659 aa16.59■□□□□ 0.25
TTC28-207ENST00000490475 PLPPR3Q6T4P5 718 aa16.58■□□□□ 0.24
TTC28-207ENST00000490475 FBXO41Q8TF61 875 aa16.58■□□□□ 0.24
TTC28-207ENST00000490475 CFDP1Q9UEE9 299 aaPredicted RBP16.58■□□□□ 0.24
TTC28-207ENST00000490475 CNTLNQ9NXG0 1405 aa16.57■□□□□ 0.24
TTC28-207ENST00000490475 ZNF777Q9ULD5 760 aaPredicted RBP16.57■□□□□ 0.24
TTC28-207ENST00000490475 KIDINS220Q9ULH0 1771 aa16.56■□□□□ 0.24
TTC28-207ENST00000490475 SAMD9LQ8IVG5 1584 aa16.55■□□□□ 0.24
TTC28-207ENST00000490475 SPAG9O60271 1321 aaKnown RBP16.55■□□□□ 0.24
TTC28-207ENST00000490475 EHBP1L1Q8N3D4 1523 aa16.55■□□□□ 0.24
TTC28-207ENST00000490475 UHRF1BP1Q6BDS2 1440 aa16.54■□□□□ 0.24
TTC28-207ENST00000490475 DMRT2Q9Y5R5 561 aa16.54■□□□□ 0.24
TTC28-207ENST00000490475 SYCP2Q9BX26 1530 aa16.54■□□□□ 0.24
TTC28-207ENST00000490475 CEP162Q5TB80 1403 aa16.53■□□□□ 0.24
TTC28-207ENST00000490475 HSPA2P54652 639 aa16.53■□□□□ 0.24
TTC28-207ENST00000490475 ATP7AQ04656 1500 aa16.5■□□□□ 0.23
TTC28-207ENST00000490475 HNRNPMP52272 730 aaKnown RBP eCLIP16.5■□□□□ 0.232e-6■■■□□ 19.1
TTC28-207ENST00000490475 CEBPAP49715 358 aaPredicted RBP16.49■□□□□ 0.23
TTC28-207ENST00000490475 C3P01024 1663 aa16.49■□□□□ 0.23
TTC28-207ENST00000490475 PPP6R1Q9UPN7 881 aa16.48■□□□□ 0.23
TTC28-207ENST00000490475 MROH2AA6NES4 1674 aa16.48■□□□□ 0.23
TTC28-207ENST00000490475 INO80Q9ULG1 1556 aaPredicted RBP16.47■□□□□ 0.23
TTC28-207ENST00000490475 RSPH4AQ5TD94 716 aa16.47■□□□□ 0.23
TTC28-207ENST00000490475 TIAM1Q13009 1591 aa16.47■□□□□ 0.23
TTC28-207ENST00000490475 A2MP01023 1474 aa16.46■□□□□ 0.23
TTC28-207ENST00000490475 ADGBQ8N7X0 1667 aa16.46■□□□□ 0.23
TTC28-207ENST00000490475 RTEL1-TNFRSF6BF6WH68 1400 aa16.45■□□□□ 0.22
TTC28-207ENST00000490475 NPATQ14207 1427 aa16.45■□□□□ 0.22
TTC28-207ENST00000490475 SUPT6HQ7KZ85 1726 aaKnown RBP16.45■□□□□ 0.22
TTC28-207ENST00000490475 PLXNC1O60486 1568 aa16.44■□□□□ 0.22
TTC28-207ENST00000490475 ZMYM3Q14202 1370 aa16.41■□□□□ 0.22
TTC28-207ENST00000490475 CERKQ8TCT0 537 aa16.41■□□□□ 0.22
TTC28-207ENST00000490475 MBD5Q9P267 1494 aa16.41■□□□□ 0.22
TTC28-207ENST00000490475 NCOA2Q15596 1464 aa16.4■□□□□ 0.22
TTC28-207ENST00000490475 STRCQ7RTU9 1775 aa16.39■□□□□ 0.21
TTC28-207ENST00000490475 PTPRTO14522 1441 aa16.39■□□□□ 0.21
TTC28-207ENST00000490475 VPS8Q8N3P4 1428 aa16.39■□□□□ 0.21
TTC28-207ENST00000490475 CCDC141Q6ZP82 1450 aa16.38■□□□□ 0.21
TTC28-207ENST00000490475 FAM135AQ9P2D6 1515 aa16.38■□□□□ 0.21
TTC28-207ENST00000490475 MAP3K1Q13233 1512 aa16.37■□□□□ 0.21
TTC28-207ENST00000490475 GGT6Q6P531 493 aa16.37■□□□□ 0.21
TTC28-207ENST00000490475 ZNF644Q9H582 1327 aaPredicted RBP16.37■□□□□ 0.21
TTC28-207ENST00000490475 DHX29Q7Z478 1369 aaKnown RBP16.37■□□□□ 0.21
TTC28-207ENST00000490475 TSPY4P0CV99 314 aa16.36■□□□□ 0.21
TTC28-207ENST00000490475 TSPY10P0CW01 314 aa16.36■□□□□ 0.21
TTC28-207ENST00000490475 CLTCQ00610 1675 aaKnown RBP16.36■□□□□ 0.21
TTC28-207ENST00000490475 CAMSAP2Q08AD1 1489 aa16.35■□□□□ 0.21
TTC28-207ENST00000490475 NCOA1Q15788 1441 aa16.34■□□□□ 0.21
TTC28-207ENST00000490475 LRRC9Q6ZRR7 1453 aa16.34■□□□□ 0.21
TTC28-207ENST00000490475 ARHGEF5Q12774 1597 aa16.34■□□□□ 0.21
TTC28-207ENST00000490475 ZNF142P52746 1687 aaPredicted RBP16.32■□□□□ 0.2
TTC28-207ENST00000490475 PTPRKQ15262 1439 aa16.31■□□□□ 0.2
TTC28-207ENST00000490475 PKD2Q13563 968 aa16.31■□□□□ 0.2
TTC28-207ENST00000490475 PLA2R1Q13018 1463 aa16.3■□□□□ 0.2
TTC28-207ENST00000490475 CAMSAP1Q5T5Y3 1602 aa16.3■□□□□ 0.2
TTC28-207ENST00000490475 MYO3AQ8NEV4 1616 aa16.3■□□□□ 0.2
TTC28-207ENST00000490475 MIA2Q96PC5 1412 aa16.29■□□□□ 0.2
TTC28-207ENST00000490475 KIF3BO15066 747 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms